Wall clock time and date at job start Sat Apr 11 2020 08:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99957 * 2 1 4 4 H 1.48495 * 109.47140 * 240.00079 * 3 2 1 5 5 H 1.48505 * 109.46871 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47419 * 119.99562 * 3 2 1 7 7 C 1.38808 * 120.00453 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00631 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99801 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00302 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47343 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46916 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.50022 * 304.93701 * 12 11 10 14 14 C 1.53044 * 109.49734 * 65.00268 * 12 11 10 15 15 C 1.53038 * 109.53649 * 181.34656 * 14 12 11 16 16 C 1.53190 * 109.31092 * 298.63463 * 15 14 12 17 17 N 1.46928 * 108.77755 * 54.63719 * 16 15 14 18 18 C 1.34774 * 120.62622 * 126.36609 * 17 16 15 19 19 O 1.21279 * 119.99617 * 185.41257 * 18 17 16 20 20 C 1.50700 * 120.00493 * 5.41747 * 18 17 16 21 21 H 1.08995 * 109.39361 * 25.42378 * 20 18 17 22 22 C 1.53109 * 109.43202 * 145.30832 * 20 18 17 23 23 C 1.53500 * 109.30953 * 189.97535 * 22 20 18 24 24 C 1.50709 * 108.05823 * 311.30066 * 23 22 20 25 25 C 1.33858 * 128.68075 * 195.75253 * 24 23 22 26 26 N 1.34421 * 107.80022 * 179.97438 * 25 24 23 27 27 C 1.30779 * 109.32235 * 359.97438 * 26 25 24 28 28 N 1.34412 * 108.55318 * 0.06096 * 27 26 25 29 29 C 1.46467 * 128.44705 * 179.82630 * 28 27 26 30 30 C 1.46924 * 118.73850 * 306.64120 * 17 16 15 31 31 H 0.97003 * 120.00158 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00049 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47259 * 60.00009 * 10 9 7 34 34 H 1.09003 * 109.47133 * 299.99744 * 10 9 7 35 35 H 1.09000 * 109.47028 * 60.00369 * 11 10 9 36 36 H 1.08991 * 109.47267 * 299.99823 * 11 10 9 37 37 H 1.09000 * 109.45447 * 61.32412 * 14 12 11 38 38 H 1.09000 * 109.44745 * 301.36347 * 14 12 11 39 39 H 1.09005 * 109.49529 * 178.68607 * 15 14 12 40 40 H 1.08998 * 109.49867 * 58.58492 * 15 14 12 41 41 H 1.09007 * 109.58916 * 294.84766 * 16 15 14 42 42 H 1.09008 * 109.70582 * 174.49875 * 16 15 14 43 43 H 1.09001 * 109.49957 * 70.03002 * 22 20 18 44 44 H 1.09000 * 109.50269 * 309.92783 * 22 20 18 45 45 H 1.09000 * 109.74359 * 191.66146 * 23 22 20 46 46 H 1.08997 * 109.78438 * 70.96434 * 23 22 20 47 47 H 1.08007 * 126.09941 * 359.92797 * 25 24 23 48 48 H 1.07999 * 125.72849 * 180.02562 * 27 26 25 49 49 H 1.08995 * 109.60555 * 77.59453 * 29 28 27 50 50 H 1.09001 * 109.73142 * 317.19989 * 29 28 27 51 51 H 1.08998 * 109.58410 * 173.14370 * 30 17 16 52 52 H 1.09003 * 109.58666 * 293.57045 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0639 -4.8197 0.0021 12 6 1.8290 -6.1447 0.0026 13 1 2.5205 -6.1659 -0.8396 14 6 2.6123 -6.2817 1.3102 15 6 3.4044 -7.5911 1.2975 16 6 2.4324 -8.7702 1.1904 17 7 1.5760 -8.5716 0.0131 18 6 1.4688 -9.5308 -0.9276 19 8 0.8380 -9.3180 -1.9413 20 6 2.1326 -10.8676 -0.7198 21 1 2.2479 -11.0524 0.3481 22 6 1.2653 -11.9683 -1.3366 23 6 1.8078 -13.3400 -0.9118 24 6 3.2953 -13.3495 -1.1543 25 6 4.1278 -14.3965 -1.2058 26 7 5.3641 -13.9269 -1.4466 27 6 5.3203 -12.6236 -1.5457 28 7 4.0493 -12.2237 -1.3687 29 6 3.5122 -10.8612 -1.3878 30 6 0.8435 -7.3052 -0.1220 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6841 -3.7141 0.8922 34 1 2.6855 -3.7149 -0.8878 35 1 0.4376 -4.7626 -0.8882 36 1 0.4370 -4.7614 0.8917 37 1 1.9181 -6.2853 2.1506 38 1 3.3001 -5.4421 1.4110 39 1 3.9803 -7.6768 2.2191 40 1 4.0811 -7.5986 0.4431 41 1 1.8151 -8.8176 2.0875 42 1 2.9921 -9.6993 1.0826 43 1 1.2926 -11.8871 -2.4232 44 1 0.2380 -11.8599 -0.9889 45 1 1.3333 -14.1230 -1.5032 46 1 1.6063 -13.5048 0.1467 47 1 3.8549 -15.4335 -1.0763 48 1 6.1639 -11.9770 -1.7369 49 1 3.4184 -10.5195 -2.4185 50 1 4.1795 -10.1950 -0.8410 51 1 0.3571 -7.2667 -1.0967 52 1 0.0940 -7.2307 0.6659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318803788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:39 Heat of formation + Delta-G solvation = 4.379598 kcal Electronic energy + Delta-G solvation = -30480.464236 eV Core-core repulsion = 26479.526032 eV Total energy + Delta-G solvation = -4000.938204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.33381 -41.52310 -39.21337 -37.25921 -36.96737 -35.05203 -34.00036 -33.21738 -32.56100 -31.70535 -29.32523 -28.71064 -26.79046 -26.01164 -25.38623 -23.91680 -23.34857 -22.71836 -22.37342 -21.20500 -20.40261 -19.62152 -19.14427 -18.44620 -18.10611 -17.01638 -16.79648 -16.59357 -16.35979 -15.98265 -15.66152 -15.46239 -15.19437 -15.07092 -15.06359 -14.94385 -14.81166 -14.64064 -14.26535 -14.16895 -14.06417 -13.86458 -13.36618 -13.07275 -12.96043 -12.86001 -12.82627 -12.50691 -12.42976 -12.21075 -12.10516 -12.01013 -11.96736 -11.80290 -11.68349 -11.56144 -11.27501 -10.95729 -10.91355 -10.81274 -10.52410 -9.70503 -9.27913 -9.01528 -7.96963 -5.26382 1.10312 1.31772 1.45826 1.49264 1.55503 1.71858 1.97740 2.19941 2.54755 3.24218 3.31562 3.36321 3.45415 3.66762 3.72959 3.75055 3.86476 3.92594 3.97917 4.05180 4.10729 4.13594 4.18468 4.34290 4.35228 4.39616 4.41462 4.52575 4.54157 4.61073 4.64250 4.76438 4.76838 4.82814 4.84417 4.87724 4.92322 4.98310 5.01513 5.13264 5.14880 5.23639 5.31990 5.41288 5.43637 5.44644 5.47906 5.52256 5.80404 6.25400 6.25591 6.31145 7.01667 7.11863 7.31105 8.07976 8.30550 9.26412 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024656 B = 0.001804 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.361048 B =15513.046976 C =15953.692132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.075 0.925 9 N -0.750 5.750 10 C 0.154 3.846 11 C -0.108 4.108 12 C -0.083 4.083 13 H 0.063 0.937 14 C -0.118 4.118 15 C -0.129 4.129 16 C 0.100 3.900 17 N -0.603 5.603 18 C 0.521 3.479 19 O -0.577 6.577 20 C -0.110 4.110 21 H 0.128 0.872 22 C -0.105 4.105 23 C -0.037 4.037 24 C -0.027 4.027 25 C -0.047 4.047 26 N -0.536 5.536 27 C 0.182 3.818 28 N -0.454 5.454 29 C 0.118 3.882 30 C 0.120 3.880 31 H 0.252 0.748 32 H 0.373 0.627 33 H 0.029 0.971 34 H 0.010 0.990 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.180 0.820 48 H 0.231 0.769 49 H 0.083 0.917 50 H 0.121 0.879 51 H 0.070 0.930 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 -30.765 3.983 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.392 5.392 10 C 0.028 3.972 11 C -0.146 4.146 12 C -0.102 4.102 13 H 0.082 0.918 14 C -0.156 4.156 15 C -0.167 4.167 16 C -0.022 4.022 17 N -0.334 5.334 18 C 0.309 3.691 19 O -0.456 6.456 20 C -0.131 4.131 21 H 0.146 0.854 22 C -0.143 4.143 23 C -0.075 4.075 24 C -0.141 4.141 25 C -0.193 4.193 26 N -0.254 5.254 27 C -0.100 4.100 28 N -0.138 5.138 29 C -0.004 4.004 30 C -0.003 4.003 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.047 0.953 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.197 0.803 48 H 0.247 0.753 49 H 0.101 0.899 50 H 0.139 0.861 51 H 0.089 0.911 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.303 -30.887 3.380 31.918 hybrid contribution -0.814 1.977 -0.346 2.166 sum 6.489 -28.910 3.034 29.784 Atomic orbital electron populations 1.69813 1.06652 1.26217 1.59349 1.25622 0.96470 1.01278 1.03601 0.85180 0.77202 0.78936 0.78253 1.20470 1.22046 1.20111 1.19614 0.91512 0.85455 1.41512 0.90677 1.42631 1.05678 1.01452 1.89470 1.20825 0.94151 0.84733 0.97486 1.21560 0.97944 0.93366 1.01773 1.21207 0.97087 0.92565 0.99386 0.91817 1.21642 0.99227 0.98427 0.96263 1.21911 0.97640 0.93258 1.03856 1.22131 0.92797 0.99831 0.87409 1.48243 1.46422 1.15671 1.23103 1.20653 0.80416 0.85839 0.82152 1.90731 1.44257 1.81591 1.29057 1.21604 0.94775 0.92437 1.04299 0.85384 1.21499 0.99425 0.92546 1.00870 1.20307 0.85960 0.97308 1.03937 1.21530 0.96164 0.86483 1.09925 1.22163 0.88629 0.99817 1.08727 1.70483 1.24848 1.09037 1.21079 1.25371 0.87510 0.92452 1.04667 1.45437 1.08335 1.07217 1.52782 1.21848 0.94382 0.81060 1.03119 1.21471 0.94041 0.82021 1.02773 0.93954 0.79558 0.95277 0.97176 0.92997 0.91583 0.91120 0.91968 0.88231 0.91542 0.89353 0.87423 0.92242 0.89730 0.87823 0.87753 0.80276 0.75305 0.89915 0.86055 0.91145 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.88 13.06 21.65 0.28 -59.59 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.25 -14.10 9.99 84.03 0.84 -13.26 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -38.72 5.60 -343.45 -1.92 -40.65 16 10 C 0.15 6.06 6.02 86.38 0.52 6.58 16 11 C -0.11 -3.30 4.80 30.60 0.15 -3.15 16 12 C -0.08 -1.86 2.32 -10.86 -0.03 -1.88 16 13 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 14 C -0.12 -2.11 4.96 30.62 0.15 -1.95 16 15 C -0.13 -1.36 6.08 30.67 0.19 -1.18 16 16 C 0.10 0.84 6.15 86.36 0.53 1.37 16 17 N -0.60 -9.41 2.98 -819.72 -2.44 -11.85 16 18 C 0.52 9.28 6.66 87.66 0.58 9.86 16 19 O -0.58 -15.85 15.86 -3.03 -0.05 -15.90 16 20 C -0.11 -1.16 1.72 -11.41 -0.02 -1.18 16 21 H 0.13 0.75 6.16 -2.39 -0.01 0.74 16 22 C -0.11 -1.21 4.77 30.80 0.15 -1.06 16 23 C -0.04 -0.31 6.31 30.02 0.19 -0.12 16 24 C -0.03 -0.37 6.57 40.73 0.27 -0.10 16 25 C -0.05 -0.80 11.84 83.30 0.99 0.18 16 26 N -0.54 -10.98 11.27 -200.97 -2.26 -13.24 16 27 C 0.18 2.71 12.66 180.38 2.28 4.99 16 28 N -0.45 -5.93 3.13 -514.88 -1.61 -7.55 16 29 C 0.12 1.20 6.22 86.48 0.54 1.74 16 30 C 0.12 2.47 5.70 86.22 0.49 2.96 16 31 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 32 H 0.37 20.46 7.67 -92.71 -0.71 19.75 16 33 H 0.03 1.11 6.54 -2.39 -0.02 1.09 16 34 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.31 6.50 -2.39 -0.02 1.30 16 39 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 42 H 0.11 0.38 5.31 -2.38 -0.01 0.36 16 43 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 44 H 0.08 0.95 8.11 -2.39 -0.02 0.93 16 45 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 48 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 49 H 0.08 1.08 8.12 -2.39 -0.02 1.06 16 50 H 0.12 0.66 7.88 -2.39 -0.02 0.64 16 51 H 0.07 1.82 7.00 -2.39 -0.02 1.80 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -77.93 404.27 2.51 -75.42 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.20 Total: 25.36 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 8.28 Total: -0.23 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -7.96 Total: -132.88 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.05 Total: -15.90 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -77.93 2.51 -75.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318803788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.799 kcal (2) G-P(sol) polarization free energy of solvation -77.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds