Wall clock time and date at job start Sat Apr 11 2020 08:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00150 * 2 1 4 4 H 1.48503 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47190 * 300.00338 * 3 2 1 6 6 H 1.48499 * 109.46823 * 60.00471 * 3 2 1 7 7 C 1.38815 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99682 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99731 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47099 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47248 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.52806 * 305.08424 * 12 11 10 14 14 C 1.53045 * 109.49385 * 65.16953 * 12 11 10 15 15 C 1.53039 * 109.53611 * 181.31778 * 14 12 11 16 16 C 1.53625 * 109.23957 * 298.50942 * 15 14 12 17 17 N 1.46918 * 108.54814 * 54.85604 * 16 15 14 18 18 C 1.34779 * 120.63212 * 126.36362 * 17 16 15 19 19 O 1.21279 * 120.00163 * 184.07758 * 18 17 16 20 20 C 1.50700 * 119.99928 * 4.08280 * 18 17 16 21 21 H 1.09003 * 109.38693 * 322.24972 * 20 18 17 22 22 C 1.53121 * 109.42977 * 202.36658 * 20 18 17 23 23 C 1.53494 * 109.30347 * 170.01417 * 22 20 18 24 24 C 1.50715 * 108.05375 * 48.72393 * 23 22 20 25 25 C 1.33856 * 128.67902 * 164.16045 * 24 23 22 26 26 N 1.34431 * 107.79869 * 180.12314 * 25 24 23 27 27 C 1.30780 * 109.31630 * 359.97438 * 26 25 24 28 28 N 1.34404 * 108.56036 * 359.95959 * 27 26 25 29 29 C 1.46471 * 128.44936 * 180.12369 * 28 27 26 30 30 C 1.46928 * 118.73680 * 306.09783 * 17 16 15 31 31 H 0.97003 * 119.99573 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99883 * 0.02562 * 9 7 2 33 33 H 1.09010 * 109.46938 * 60.00364 * 10 9 7 34 34 H 1.09001 * 109.47592 * 300.00261 * 10 9 7 35 35 H 1.09010 * 109.46722 * 60.00485 * 11 10 9 36 36 H 1.09001 * 109.47318 * 300.00681 * 11 10 9 37 37 H 1.09004 * 109.45718 * 301.32964 * 14 12 11 38 38 H 1.08998 * 109.46424 * 61.30483 * 14 12 11 39 39 H 1.08998 * 109.49934 * 58.58526 * 15 14 12 40 40 H 1.09001 * 109.49400 * 178.65026 * 15 14 12 41 41 H 1.09005 * 109.73560 * 295.11675 * 16 15 14 42 42 H 1.09008 * 109.66274 * 174.55524 * 16 15 14 43 43 H 1.08997 * 109.50148 * 50.06971 * 22 20 18 44 44 H 1.08999 * 109.53007 * 289.98053 * 22 20 18 45 45 H 1.09004 * 109.74830 * 289.08522 * 23 22 20 46 46 H 1.08998 * 109.78978 * 168.38885 * 23 22 20 47 47 H 1.08003 * 126.10450 * 0.09227 * 25 24 23 48 48 H 1.08009 * 125.72202 * 179.97438 * 27 26 25 49 49 H 1.08994 * 109.59984 * 282.46049 * 29 28 27 50 50 H 1.09000 * 109.59887 * 42.93441 * 29 28 27 51 51 H 1.09004 * 109.58616 * 173.64299 * 30 17 16 52 52 H 1.08996 * 109.58351 * 293.92536 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 6 1.8286 -6.1448 -0.0026 13 1 2.5208 -6.1647 -0.8443 14 6 2.6106 -6.2848 1.3055 15 6 3.4021 -7.5946 1.2908 16 6 2.4251 -8.7753 1.1832 17 7 1.5742 -8.5717 0.0029 18 6 1.4666 -9.5291 -0.9396 19 8 0.8206 -9.3209 -1.9446 20 6 2.1490 -10.8585 -0.7444 21 1 3.1156 -10.7022 -0.2654 22 6 2.3572 -11.5288 -2.1053 23 6 3.2668 -12.7533 -1.9339 24 6 2.7388 -13.5699 -0.7824 25 6 3.0224 -14.8366 -0.4557 26 7 2.3159 -15.1449 0.6456 27 6 1.6061 -14.1082 1.0086 28 7 1.8418 -13.1051 0.1457 29 6 1.2791 -11.7528 0.1455 30 6 0.8382 -7.3067 -0.1276 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6853 -3.7150 0.8879 34 1 2.6839 -3.7142 -0.8921 35 1 0.4360 -4.7617 -0.8902 36 1 0.4379 -4.7621 0.8899 37 1 3.2989 -5.4459 1.4087 38 1 1.9158 -6.2900 2.1453 39 1 4.0796 -7.6008 0.4370 40 1 3.9774 -7.6823 2.2125 41 1 1.8040 -8.8219 2.0778 42 1 2.9838 -9.7050 1.0749 43 1 2.8240 -10.8221 -2.7914 44 1 1.3944 -11.8442 -2.5072 45 1 4.2849 -12.4286 -1.7189 46 1 3.2559 -13.3515 -2.8450 47 1 3.6978 -15.4939 -0.9832 48 1 0.9420 -14.0652 1.8593 49 1 0.2627 -11.7797 -0.2473 50 1 1.2703 -11.3603 1.1623 51 1 0.3494 -7.2671 -1.1011 52 1 0.0886 -7.2372 0.6607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318803793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:45 Heat of formation + Delta-G solvation = 24.829738 kcal Electronic energy + Delta-G solvation = -30405.157149 eV Core-core repulsion = 26405.105729 eV Total energy + Delta-G solvation = -4000.051420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.77850 -40.77069 -38.32545 -36.61965 -35.47958 -33.68268 -33.42097 -32.14386 -31.40987 -30.64433 -28.42533 -27.59904 -26.07733 -25.03576 -24.16062 -22.96497 -22.45967 -21.82942 -21.43712 -20.21343 -19.66619 -19.11304 -17.76426 -17.57855 -17.03297 -16.31417 -16.06414 -15.66847 -15.07465 -14.89085 -14.67659 -14.51756 -14.49782 -14.40179 -14.16184 -14.08793 -13.66801 -13.56675 -13.32602 -13.24554 -13.02883 -13.00889 -12.53988 -12.22412 -12.18440 -11.73949 -11.55335 -11.40528 -11.32032 -11.11332 -11.01715 -10.82079 -10.65909 -10.55310 -10.33160 -10.25289 -10.11334 -9.97980 -9.94363 -9.71030 -8.95159 -8.85713 -8.72281 -6.92671 -5.77920 -3.06497 1.64963 2.01256 2.33813 2.60774 2.80396 3.41832 3.47221 3.49662 3.79972 3.85191 3.93797 4.21345 4.30449 4.37092 4.51183 4.57051 4.58617 4.60310 4.64993 4.69545 4.82831 4.84726 4.91884 5.01960 5.03445 5.12145 5.27857 5.30275 5.33976 5.48890 5.49928 5.52388 5.53639 5.62302 5.65828 5.66315 5.82063 5.89857 5.95224 6.02289 6.09757 6.16903 6.27660 6.35049 6.37691 6.40837 6.78042 6.82927 6.87588 7.00550 7.68698 7.69018 7.74802 8.41258 9.52177 10.10981 10.45214 11.45126 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.001723 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.004000 B =16248.894910 C =16406.098330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.074 0.926 14 C -0.119 4.119 15 C -0.135 4.135 16 C 0.101 3.899 17 N -0.607 5.607 18 C 0.521 3.479 19 O -0.529 6.529 20 C -0.121 4.121 21 H 0.105 0.895 22 C -0.106 4.106 23 C -0.046 4.046 24 C -0.024 4.024 25 C -0.024 4.024 26 N -0.496 5.496 27 C 0.185 3.815 28 N -0.455 5.455 29 C 0.118 3.882 30 C 0.115 3.885 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.020 0.980 34 H 0.016 0.984 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.169 0.831 48 H 0.205 0.795 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -29.488 2.086 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.092 0.908 14 C -0.156 4.156 15 C -0.173 4.173 16 C -0.022 4.022 17 N -0.339 5.339 18 C 0.307 3.693 19 O -0.405 6.405 20 C -0.143 4.143 21 H 0.123 0.877 22 C -0.144 4.144 23 C -0.084 4.084 24 C -0.138 4.138 25 C -0.171 4.171 26 N -0.214 5.214 27 C -0.097 4.097 28 N -0.139 5.139 29 C -0.005 4.005 30 C -0.007 4.007 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.111 0.889 47 H 0.187 0.813 48 H 0.222 0.778 49 H 0.111 0.889 50 H 0.116 0.884 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.482 -29.884 1.976 30.447 hybrid contribution 0.108 1.843 -0.164 1.853 sum 5.590 -28.041 1.812 28.650 Atomic orbital electron populations 1.69674 1.05114 1.25520 1.57915 1.24756 0.95548 0.97730 1.03103 0.86114 0.78757 0.84104 0.77207 1.20575 1.21844 1.21852 1.19281 0.91046 0.84224 1.42468 0.91182 1.42385 1.05900 1.00104 1.89469 1.20660 0.93499 0.85491 0.97643 1.21704 0.98793 0.92995 1.02333 1.21442 0.97306 0.94212 0.98446 0.90775 1.21664 0.99375 0.97049 0.97516 1.22008 0.97776 0.94832 1.02684 1.21995 0.92988 0.99236 0.87945 1.48187 1.46678 1.16950 1.22127 1.20147 0.81072 0.85092 0.82941 1.90744 1.41403 1.80689 1.27643 1.21647 1.00515 0.93033 0.99093 0.87658 1.21520 1.01505 0.96764 0.94613 1.20270 0.98867 0.94675 0.94629 1.21212 0.99368 0.96672 0.96565 1.21851 1.04096 0.94005 0.97152 1.70519 1.10311 1.26809 1.13715 1.24832 1.03454 0.83347 0.98039 1.45362 1.34177 1.11792 1.22598 1.21785 0.97893 0.79305 1.01542 1.21798 0.93936 0.81290 1.03690 0.93570 0.78332 0.96235 0.96656 0.91682 0.91731 0.90447 0.91624 0.91389 0.90573 0.90852 0.90073 0.89677 0.90274 0.89766 0.88877 0.81344 0.77842 0.88917 0.88418 0.88783 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.73 -18.70 5.60 -59.90 -0.34 -19.04 16 10 C 0.15 3.03 6.02 -4.04 -0.02 3.01 16 11 C -0.12 -1.82 4.80 -26.73 -0.13 -1.95 16 12 C -0.09 -1.10 2.34 -90.50 -0.21 -1.31 16 13 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 14 C -0.12 -1.19 4.95 -26.69 -0.13 -1.32 16 15 C -0.13 -0.98 6.10 -26.39 -0.16 -1.14 16 16 C 0.10 0.61 6.01 -3.49 -0.02 0.59 16 17 N -0.61 -5.30 2.97 -172.50 -0.51 -5.81 16 18 C 0.52 4.98 6.80 -10.98 -0.07 4.91 16 19 O -0.53 -7.19 15.64 5.56 0.09 -7.10 16 20 C -0.12 -0.78 1.69 -91.58 -0.15 -0.94 16 21 H 0.11 0.56 6.19 -51.93 -0.32 0.24 16 22 C -0.11 -0.72 4.62 -26.41 -0.12 -0.84 16 23 C -0.05 -0.26 6.31 -27.62 -0.17 -0.43 16 24 C -0.02 -0.19 6.57 -81.73 -0.54 -0.72 16 25 C -0.02 -0.21 11.84 -17.95 -0.21 -0.43 16 26 N -0.50 -5.16 11.27 -14.87 -0.17 -5.33 16 27 C 0.19 1.45 12.66 -90.72 -1.15 0.30 16 28 N -0.46 -3.27 3.13 -114.11 -0.36 -3.63 16 29 C 0.12 0.66 6.22 -3.93 -0.02 0.64 16 30 C 0.11 1.22 5.72 -3.71 -0.02 1.20 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 33 H 0.02 0.38 6.54 -51.92 -0.34 0.04 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.89 6.51 -51.93 -0.34 0.55 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.35 5.35 -51.92 -0.28 0.07 16 43 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 44 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 48 H 0.21 0.89 8.06 -52.48 -0.42 0.46 16 49 H 0.09 0.57 8.12 -51.93 -0.42 0.14 16 50 H 0.10 0.36 7.78 -51.93 -0.40 -0.04 16 51 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 52 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -35.25 403.89 -11.56 -46.81 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -8.66 Total: 4.13 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -3.39 Total: -5.89 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.65 Total: -61.46 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.09 Total: -7.10 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.25 -11.56 -46.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318803793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.639 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds