Wall clock time and date at job start Sat Apr 11 2020 08:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00150 * 2 1 4 4 H 1.48503 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47190 * 300.00338 * 3 2 1 6 6 H 1.48499 * 109.46823 * 60.00471 * 3 2 1 7 7 C 1.38815 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99682 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99731 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47099 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47248 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.52806 * 305.08424 * 12 11 10 14 14 C 1.53045 * 109.49385 * 65.16953 * 12 11 10 15 15 C 1.53039 * 109.53611 * 181.31778 * 14 12 11 16 16 C 1.53625 * 109.23957 * 298.50942 * 15 14 12 17 17 N 1.46918 * 108.54814 * 54.85604 * 16 15 14 18 18 C 1.34779 * 120.63212 * 126.36362 * 17 16 15 19 19 O 1.21279 * 120.00163 * 184.07758 * 18 17 16 20 20 C 1.50700 * 119.99928 * 4.08280 * 18 17 16 21 21 H 1.09003 * 109.38693 * 322.24972 * 20 18 17 22 22 C 1.53121 * 109.42977 * 202.36658 * 20 18 17 23 23 C 1.53494 * 109.30347 * 170.01417 * 22 20 18 24 24 C 1.50715 * 108.05375 * 48.72393 * 23 22 20 25 25 C 1.33856 * 128.67902 * 164.16045 * 24 23 22 26 26 N 1.34431 * 107.79869 * 180.12314 * 25 24 23 27 27 C 1.30780 * 109.31630 * 359.97438 * 26 25 24 28 28 N 1.34404 * 108.56036 * 359.95959 * 27 26 25 29 29 C 1.46471 * 128.44936 * 180.12369 * 28 27 26 30 30 C 1.46928 * 118.73680 * 306.09783 * 17 16 15 31 31 H 0.97003 * 119.99573 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99883 * 0.02562 * 9 7 2 33 33 H 1.09010 * 109.46938 * 60.00364 * 10 9 7 34 34 H 1.09001 * 109.47592 * 300.00261 * 10 9 7 35 35 H 1.09010 * 109.46722 * 60.00485 * 11 10 9 36 36 H 1.09001 * 109.47318 * 300.00681 * 11 10 9 37 37 H 1.09004 * 109.45718 * 301.32964 * 14 12 11 38 38 H 1.08998 * 109.46424 * 61.30483 * 14 12 11 39 39 H 1.08998 * 109.49934 * 58.58526 * 15 14 12 40 40 H 1.09001 * 109.49400 * 178.65026 * 15 14 12 41 41 H 1.09005 * 109.73560 * 295.11675 * 16 15 14 42 42 H 1.09008 * 109.66274 * 174.55524 * 16 15 14 43 43 H 1.08997 * 109.50148 * 50.06971 * 22 20 18 44 44 H 1.08999 * 109.53007 * 289.98053 * 22 20 18 45 45 H 1.09004 * 109.74830 * 289.08522 * 23 22 20 46 46 H 1.08998 * 109.78978 * 168.38885 * 23 22 20 47 47 H 1.08003 * 126.10450 * 0.09227 * 25 24 23 48 48 H 1.08009 * 125.72202 * 179.97438 * 27 26 25 49 49 H 1.08994 * 109.59984 * 282.46049 * 29 28 27 50 50 H 1.09000 * 109.59887 * 42.93441 * 29 28 27 51 51 H 1.09004 * 109.58616 * 173.64299 * 30 17 16 52 52 H 1.08996 * 109.58351 * 293.92536 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0017 11 6 1.0637 -4.8197 -0.0008 12 6 1.8286 -6.1448 -0.0026 13 1 2.5208 -6.1647 -0.8443 14 6 2.6106 -6.2848 1.3055 15 6 3.4021 -7.5946 1.2908 16 6 2.4251 -8.7753 1.1832 17 7 1.5742 -8.5717 0.0029 18 6 1.4666 -9.5291 -0.9396 19 8 0.8206 -9.3209 -1.9446 20 6 2.1490 -10.8585 -0.7444 21 1 3.1156 -10.7022 -0.2654 22 6 2.3572 -11.5288 -2.1053 23 6 3.2668 -12.7533 -1.9339 24 6 2.7388 -13.5699 -0.7824 25 6 3.0224 -14.8366 -0.4557 26 7 2.3159 -15.1449 0.6456 27 6 1.6061 -14.1082 1.0086 28 7 1.8418 -13.1051 0.1457 29 6 1.2791 -11.7528 0.1455 30 6 0.8382 -7.3067 -0.1276 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6853 -3.7150 0.8879 34 1 2.6839 -3.7142 -0.8921 35 1 0.4360 -4.7617 -0.8902 36 1 0.4379 -4.7621 0.8899 37 1 3.2989 -5.4459 1.4087 38 1 1.9158 -6.2900 2.1453 39 1 4.0796 -7.6008 0.4370 40 1 3.9774 -7.6823 2.2125 41 1 1.8040 -8.8219 2.0778 42 1 2.9838 -9.7050 1.0749 43 1 2.8240 -10.8221 -2.7914 44 1 1.3944 -11.8442 -2.5072 45 1 4.2849 -12.4286 -1.7189 46 1 3.2559 -13.3515 -2.8450 47 1 3.6978 -15.4939 -0.9832 48 1 0.9420 -14.0652 1.8593 49 1 0.2627 -11.7797 -0.2473 50 1 1.2703 -11.3603 1.1623 51 1 0.3494 -7.2671 -1.1011 52 1 0.0886 -7.2372 0.6607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318803793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:44 Heat of formation + Delta-G solvation = 4.258344 kcal Electronic energy + Delta-G solvation = -30406.049191 eV Core-core repulsion = 26405.105729 eV Total energy + Delta-G solvation = -4000.943462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.32692 -41.51019 -39.19187 -37.25774 -36.96853 -35.05624 -33.99289 -33.20905 -32.53242 -31.69931 -29.32537 -28.68341 -26.76411 -26.00492 -25.41145 -23.90453 -23.34690 -22.70337 -22.37167 -21.22307 -20.30301 -19.74450 -19.13988 -18.36957 -18.12168 -17.02215 -16.85113 -16.56631 -16.31904 -16.01673 -15.70955 -15.41429 -15.15995 -15.10218 -15.05363 -14.90941 -14.80158 -14.67704 -14.25565 -14.14552 -14.06660 -13.86477 -13.31827 -13.05998 -12.99338 -12.90499 -12.79784 -12.50416 -12.42532 -12.15523 -12.09408 -12.01286 -11.97196 -11.80346 -11.68490 -11.56155 -11.27820 -10.96512 -10.92993 -10.80073 -10.51022 -9.69793 -9.27734 -9.01813 -7.97739 -5.26982 1.11239 1.34368 1.45849 1.47048 1.57146 1.71202 1.98698 2.20696 2.54262 3.24298 3.31516 3.35999 3.46537 3.65880 3.73619 3.74529 3.87614 3.93719 3.96257 4.03936 4.11033 4.14662 4.20209 4.33994 4.34956 4.39881 4.42078 4.52525 4.54273 4.62062 4.64082 4.76449 4.78169 4.82436 4.85364 4.87563 4.91938 5.00183 5.01285 5.13570 5.14899 5.23628 5.32022 5.41352 5.43873 5.44879 5.48131 5.52332 5.80090 6.25118 6.27433 6.31629 7.02376 7.12606 7.30766 8.07427 8.30102 9.26110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.001723 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.004000 B =16248.894910 C =16406.098330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.749 5.749 10 C 0.154 3.846 11 C -0.108 4.108 12 C -0.083 4.083 13 H 0.061 0.939 14 C -0.118 4.118 15 C -0.130 4.130 16 C 0.099 3.901 17 N -0.603 5.603 18 C 0.521 3.479 19 O -0.577 6.577 20 C -0.111 4.111 21 H 0.127 0.873 22 C -0.104 4.104 23 C -0.038 4.038 24 C -0.027 4.027 25 C -0.047 4.047 26 N -0.537 5.537 27 C 0.185 3.815 28 N -0.455 5.455 29 C 0.120 3.880 30 C 0.120 3.880 31 H 0.252 0.748 32 H 0.373 0.627 33 H 0.029 0.971 34 H 0.009 0.991 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.178 0.822 48 H 0.234 0.766 49 H 0.086 0.914 50 H 0.126 0.874 51 H 0.069 0.931 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.333 -30.569 3.673 31.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.392 5.392 10 C 0.028 3.972 11 C -0.146 4.146 12 C -0.103 4.103 13 H 0.079 0.921 14 C -0.155 4.155 15 C -0.168 4.168 16 C -0.022 4.022 17 N -0.335 5.335 18 C 0.309 3.691 19 O -0.456 6.456 20 C -0.132 4.132 21 H 0.144 0.856 22 C -0.143 4.143 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.193 4.193 26 N -0.256 5.256 27 C -0.097 4.097 28 N -0.138 5.138 29 C -0.002 4.002 30 C -0.003 4.003 31 H 0.060 0.940 32 H 0.205 0.795 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.195 0.805 48 H 0.250 0.750 49 H 0.104 0.896 50 H 0.144 0.856 51 H 0.088 0.912 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.108 -30.999 3.583 32.004 hybrid contribution -0.376 2.151 -0.676 2.286 sum 6.732 -28.848 2.908 29.765 Atomic orbital electron populations 1.69830 1.06660 1.26070 1.59507 1.25618 0.96469 1.01254 1.03636 0.85044 0.78213 0.79575 0.76751 1.18978 1.22053 1.21764 1.19692 0.91524 0.85451 1.41237 0.90670 1.42642 1.05688 1.01451 1.89424 1.20827 0.94176 0.84779 0.97452 1.21561 0.97922 0.93322 1.01820 1.21286 0.97046 0.92650 0.99296 0.92064 1.21639 0.99229 0.98322 0.96317 1.21981 0.97677 0.93478 1.03635 1.22263 0.92838 0.99779 0.87367 1.48247 1.46506 1.15860 1.22844 1.20645 0.80334 0.86022 0.82123 1.90731 1.43562 1.81656 1.29660 1.21585 1.01147 0.91189 0.99271 0.85553 1.21472 1.00824 0.97176 0.94798 1.20296 0.99144 0.93809 0.94384 1.21478 0.99209 0.96554 0.96887 1.22139 1.04830 0.94924 0.97436 1.70487 1.11762 1.28407 1.14893 1.25411 1.03016 0.82815 0.98490 1.45446 1.33924 1.12188 1.22284 1.21868 0.97105 0.78431 1.02821 1.21566 0.93897 0.81949 1.02869 0.93959 0.79537 0.95282 0.97268 0.92999 0.91454 0.92124 0.90886 0.91998 0.88302 0.88771 0.87438 0.90279 0.92123 0.88099 0.87955 0.80460 0.74985 0.89574 0.85574 0.91211 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 7 C -0.25 -14.01 9.99 84.03 0.84 -13.17 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.73 5.60 -343.44 -1.92 -40.65 16 10 C 0.15 6.07 6.02 86.38 0.52 6.59 16 11 C -0.11 -3.29 4.80 30.59 0.15 -3.15 16 12 C -0.08 -1.88 2.34 -10.71 -0.03 -1.91 16 13 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.12 -2.12 4.95 30.62 0.15 -1.97 16 15 C -0.13 -1.45 6.10 30.82 0.19 -1.26 16 16 C 0.10 0.80 6.01 86.51 0.52 1.32 16 17 N -0.60 -9.22 2.97 -818.06 -2.43 -11.65 16 18 C 0.52 9.22 6.80 87.66 0.60 9.81 16 19 O -0.58 -15.83 15.64 -3.03 -0.05 -15.88 16 20 C -0.11 -1.16 1.69 -11.42 -0.02 -1.18 16 21 H 0.13 0.83 6.19 -2.39 -0.01 0.81 16 22 C -0.10 -1.29 4.62 30.80 0.14 -1.15 16 23 C -0.04 -0.35 6.31 30.02 0.19 -0.16 16 24 C -0.03 -0.37 6.57 40.73 0.27 -0.10 16 25 C -0.05 -0.79 11.84 83.30 0.99 0.19 16 26 N -0.54 -10.60 11.27 -200.96 -2.26 -12.87 16 27 C 0.18 2.50 12.66 180.38 2.28 4.79 16 28 N -0.45 -5.46 3.13 -514.93 -1.61 -7.07 16 29 C 0.12 1.01 6.22 86.47 0.54 1.54 16 30 C 0.12 2.44 5.72 86.36 0.49 2.93 16 31 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 32 H 0.37 20.46 7.67 -92.71 -0.71 19.74 16 33 H 0.03 1.11 6.54 -2.38 -0.02 1.10 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.30 6.51 -2.38 -0.02 1.29 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.11 0.36 5.35 -2.38 -0.01 0.35 16 43 H 0.08 1.08 8.11 -2.39 -0.02 1.06 16 44 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 45 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 48 H 0.23 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.09 0.89 8.12 -2.39 -0.02 0.87 16 50 H 0.13 0.37 7.78 -2.39 -0.02 0.35 16 51 H 0.07 1.79 7.00 -2.38 -0.02 1.77 16 52 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -78.31 403.89 2.52 -75.78 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.20 Total: 24.57 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: 8.29 Total: -0.91 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -7.95 Total: -131.85 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.05 Total: -15.88 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -78.31 2.52 -75.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318803793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.040 kcal (2) G-P(sol) polarization free energy of solvation -78.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds