Wall clock time and date at job start Sat Apr 11 2020 08:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48503 * 109.46881 * 269.99922 * 3 2 1 5 5 H 1.48493 * 109.47165 * 30.00022 * 3 2 1 6 6 H 1.48503 * 109.46824 * 150.00426 * 3 2 1 7 7 C 1.38810 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99908 * 163.06256 * 7 2 1 9 9 N 1.36940 * 120.00160 * 343.06979 * 7 2 1 10 10 C 1.46931 * 120.63036 * 331.83268 * 9 7 2 11 11 C 1.53189 * 108.77559 * 233.63615 * 10 9 7 12 12 C 1.53043 * 109.31139 * 305.36282 * 11 10 9 13 13 C 1.52999 * 109.45695 * 181.38942 * 12 11 10 14 14 C 1.53009 * 109.46780 * 174.99998 * 13 12 11 15 15 N 1.46509 * 109.46718 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99564 * 179.97438 * 15 14 13 17 17 O 1.21281 * 119.99839 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00013 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.43197 * 60.09278 * 18 16 15 20 20 C 1.53108 * 109.43298 * 180.02562 * 18 16 15 21 21 C 1.53494 * 109.30750 * 189.98130 * 20 18 16 22 22 C 1.50710 * 108.06281 * 311.29611 * 21 20 18 23 23 C 1.33854 * 128.68728 * 195.74200 * 22 21 20 24 24 N 1.34426 * 107.80254 * 179.90064 * 23 22 21 25 25 C 1.30791 * 109.31953 * 0.02562 * 24 23 22 26 26 N 1.34413 * 108.55070 * 0.05388 * 25 24 23 27 27 C 1.46469 * 128.44304 * 179.81479 * 26 25 24 28 28 C 1.53039 * 109.53620 * 61.36952 * 12 11 10 29 29 C 1.46921 * 120.63138 * 151.86268 * 9 7 2 30 30 H 0.96998 * 119.99856 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58332 * 113.84415 * 10 9 7 32 32 H 1.08999 * 109.70068 * 353.49280 * 10 9 7 33 33 H 1.09008 * 109.49442 * 185.41886 * 11 10 9 34 34 H 1.08993 * 109.50022 * 65.31503 * 11 10 9 35 35 H 1.09004 * 109.46170 * 301.36194 * 12 11 10 36 36 H 1.08999 * 109.47299 * 55.00234 * 13 12 11 37 37 H 1.08992 * 109.47555 * 294.99837 * 13 12 11 38 38 H 1.08996 * 109.47225 * 299.99516 * 14 13 12 39 39 H 1.08999 * 109.47012 * 60.00059 * 14 13 12 40 40 H 0.96990 * 119.99968 * 359.97438 * 15 14 13 41 41 H 1.08999 * 109.49792 * 309.93294 * 20 18 16 42 42 H 1.08998 * 109.49924 * 70.03328 * 20 18 16 43 43 H 1.08999 * 109.74684 * 70.93719 * 21 20 18 44 44 H 1.09003 * 109.74697 * 191.60723 * 21 20 18 45 45 H 1.08001 * 126.09848 * 359.87380 * 23 22 21 46 46 H 1.07995 * 125.72315 * 180.02562 * 25 24 23 47 47 H 1.08995 * 109.60345 * 77.57612 * 27 26 25 48 48 H 1.09005 * 109.59489 * 317.10260 * 27 26 25 49 49 H 1.08997 * 109.49680 * 58.58494 * 28 12 11 50 50 H 1.09006 * 109.48994 * 178.68463 * 28 12 11 51 51 H 1.09002 * 109.58643 * 246.14862 * 29 9 7 52 52 H 1.09000 * 109.59344 * 6.43200 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2226 -0.2719 9 7 1.3700 -2.3622 0.3464 10 6 0.2263 -2.3398 1.2684 11 6 0.4984 -3.3180 2.4155 12 6 0.8133 -4.7000 1.8382 13 6 1.0517 -5.6878 2.9820 14 6 1.2432 -7.0939 2.4097 15 7 1.4721 -8.0398 3.5050 16 6 1.6673 -9.3462 3.2373 17 8 1.6540 -9.7386 2.0898 18 6 1.9033 -10.3190 4.3637 19 1 1.0433 -10.3140 5.0334 20 6 2.0947 -11.7257 3.7901 21 6 2.0849 -12.7467 4.9362 22 6 3.0212 -12.2537 6.0093 23 6 3.5445 -12.9305 7.0387 24 7 4.3249 -12.0842 7.7328 25 6 4.2989 -10.9066 7.1643 26 7 3.4967 -10.9692 6.0876 27 6 3.1560 -9.9032 5.1427 28 6 2.0685 -4.6165 0.9666 29 6 1.8142 -3.6530 -0.1969 30 1 -0.4850 0.8400 0.0004 31 1 -0.6768 -2.6411 0.7376 32 1 0.0966 -1.3343 1.6687 33 1 -0.3821 -3.3829 3.0548 34 1 1.3480 -2.9658 3.0002 35 1 -0.0268 -5.0408 1.2331 36 1 0.1920 -5.6823 3.6520 37 1 1.9447 -5.3956 3.5343 38 1 0.3502 -7.3862 1.8575 39 1 2.1029 -7.0995 1.7397 40 1 1.4830 -7.7258 4.4226 41 1 1.2840 -11.9493 3.0967 42 1 3.0483 -11.7777 3.2647 43 1 1.0766 -12.8370 5.3403 44 1 2.4224 -13.7159 4.5689 45 1 3.3705 -13.9709 7.2705 46 1 4.8322 -10.0308 7.5033 47 1 3.9833 -9.7508 4.4496 48 1 2.9583 -8.9805 5.6882 49 1 2.9034 -4.2520 1.5650 50 1 2.3055 -5.6057 0.5747 51 1 1.0406 -4.0615 -0.8471 52 1 2.7334 -3.5133 -0.7659 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319028427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:53 Heat of formation + Delta-G solvation = 5.662421 kcal Electronic energy + Delta-G solvation = -29936.421988 eV Core-core repulsion = 25935.539411 eV Total energy + Delta-G solvation = -4000.882577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.29931 -41.04759 -39.54191 -37.36640 -36.67314 -35.12884 -33.95684 -33.09801 -31.93736 -31.48547 -29.97469 -28.74459 -26.93664 -25.76173 -24.70020 -23.83162 -23.24675 -22.38182 -22.16756 -21.40361 -20.59880 -20.05412 -18.70198 -18.37849 -17.93537 -16.94904 -16.83118 -16.76056 -16.50008 -15.77947 -15.65363 -15.29281 -15.12658 -15.08184 -14.98523 -14.86904 -14.77678 -14.52631 -14.31339 -14.07537 -13.88020 -13.82962 -13.04640 -12.98052 -12.93781 -12.84405 -12.71964 -12.54208 -12.27883 -12.17240 -12.13060 -11.97877 -11.92758 -11.80487 -11.52296 -11.18025 -10.98100 -10.95900 -10.80344 -10.52836 -10.50092 -10.10518 -9.27728 -8.66110 -7.87317 -5.32676 1.11715 1.43854 1.45613 1.46728 1.56678 1.81208 2.12513 2.20872 2.50990 3.26859 3.27649 3.50130 3.54626 3.73080 3.76946 3.85429 3.94856 3.95448 4.07802 4.15149 4.16342 4.25856 4.32550 4.36938 4.44606 4.46413 4.59606 4.63088 4.67939 4.76180 4.78775 4.81680 4.90753 4.93341 5.04469 5.05265 5.06358 5.12304 5.16552 5.28565 5.36950 5.41443 5.42074 5.42820 5.48681 5.57182 5.67802 5.80384 5.82135 6.28519 6.39797 6.49147 7.12692 7.15892 7.17491 7.88259 8.39385 9.18591 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024658 B = 0.001673 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.283365 B =16735.501598 C =17284.771933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.966 3.034 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.120 4.120 12 C -0.071 4.071 13 C -0.108 4.108 14 C 0.122 3.878 15 N -0.713 5.713 16 C 0.521 3.479 17 O -0.575 6.575 18 C -0.109 4.109 19 H 0.128 0.872 20 C -0.104 4.104 21 C -0.039 4.039 22 C -0.027 4.027 23 C -0.050 4.050 24 N -0.538 5.538 25 C 0.183 3.817 26 N -0.455 5.455 27 C 0.114 3.886 28 C -0.116 4.116 29 C 0.136 3.864 30 H 0.249 0.751 31 H -0.010 1.010 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.417 0.583 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.178 0.822 46 H 0.234 0.766 47 H 0.090 0.910 48 H 0.129 0.871 49 H 0.057 0.943 50 H 0.075 0.925 51 H 0.007 0.993 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.362 -24.114 15.244 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.794 3.206 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.047 3.953 11 C -0.159 4.159 12 C -0.090 4.090 13 C -0.146 4.146 14 C -0.002 4.002 15 N -0.365 5.365 16 C 0.306 3.694 17 O -0.454 6.454 18 C -0.131 4.131 19 H 0.146 0.854 20 C -0.143 4.143 21 C -0.077 4.077 22 C -0.142 4.142 23 C -0.196 4.196 24 N -0.257 5.257 25 C -0.099 4.099 26 N -0.139 5.139 27 C -0.008 4.008 28 C -0.155 4.155 29 C 0.011 3.989 30 H 0.058 0.942 31 H 0.008 0.992 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.254 0.746 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.195 0.805 46 H 0.250 0.750 47 H 0.108 0.892 48 H 0.147 0.853 49 H 0.076 0.924 50 H 0.093 0.907 51 H 0.025 0.975 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.689 -24.312 15.033 28.821 hybrid contribution -0.243 1.653 -0.862 1.880 sum 3.445 -22.659 14.170 26.946 Atomic orbital electron populations 1.70193 1.06674 1.25790 1.55554 1.25803 0.96051 1.01508 1.01408 0.85297 0.78129 0.79609 0.77542 1.21293 1.21767 1.19468 1.19508 0.92764 0.86205 1.40818 0.91841 1.44337 1.36041 1.02222 1.50905 1.20621 0.87479 0.97831 0.89322 1.22014 1.00865 0.95324 0.97730 1.20887 0.97504 0.94360 0.96260 1.21698 1.03569 0.91617 0.97706 1.21359 1.01170 0.88177 0.89488 1.45970 1.72108 1.06935 1.11477 1.20582 0.75823 0.83097 0.89857 1.90746 1.52046 1.78706 1.23854 1.21563 1.00291 0.95258 0.95967 0.85421 1.21458 1.03493 0.91634 0.97667 1.20299 0.97816 0.98991 0.90589 1.21505 1.04986 0.85495 1.02175 1.22146 1.01151 1.00789 0.95495 1.70480 1.22786 1.01838 1.30626 1.25420 0.97929 0.99311 0.87238 1.45469 1.36032 1.09777 1.22614 1.22028 0.97233 0.90066 0.91492 1.21966 0.97746 0.98607 0.97197 1.21088 0.96788 0.86396 0.94633 0.94153 0.99153 0.93150 0.91176 0.92797 0.92418 0.89751 0.90084 0.92575 0.92010 0.74590 0.89902 0.92194 0.88270 0.88006 0.80522 0.75002 0.89154 0.85284 0.92393 0.90656 0.97495 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.55 11.19 21.65 0.24 -55.31 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.53 16 3 Si 0.97 44.74 29.59 68.60 2.03 46.77 16 4 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.26 -14.51 9.58 84.03 0.81 -13.71 16 8 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -30.60 2.99 -699.10 -2.09 -32.70 16 10 C 0.17 8.18 5.30 86.36 0.46 8.64 16 11 C -0.12 -4.05 5.36 30.67 0.16 -3.89 16 12 C -0.07 -1.94 2.15 -10.77 -0.02 -1.97 16 13 C -0.11 -1.88 4.80 30.60 0.15 -1.73 16 14 C 0.12 2.14 5.43 86.38 0.47 2.60 16 15 N -0.71 -8.46 5.46 -463.04 -2.53 -10.99 16 16 C 0.52 7.97 7.14 87.66 0.63 8.60 16 17 O -0.57 -14.54 15.81 -3.03 -0.05 -14.59 16 18 C -0.11 -0.99 2.52 -11.42 -0.03 -1.02 16 19 H 0.13 0.73 8.11 -2.39 -0.02 0.71 16 20 C -0.10 -1.19 4.69 30.80 0.14 -1.04 16 21 C -0.04 -0.34 6.31 30.02 0.19 -0.16 16 22 C -0.03 -0.37 6.57 40.73 0.27 -0.10 16 23 C -0.05 -0.85 11.84 83.30 0.99 0.13 16 24 N -0.54 -10.91 11.27 -200.97 -2.26 -13.18 16 25 C 0.18 2.55 12.66 180.38 2.28 4.83 16 26 N -0.46 -5.38 3.13 -514.89 -1.61 -6.99 16 27 C 0.11 0.78 6.12 86.47 0.53 1.31 16 28 C -0.12 -3.55 5.15 30.67 0.16 -3.39 16 29 C 0.14 5.61 6.52 86.36 0.56 6.17 16 30 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H 0.05 2.72 6.06 -2.39 -0.01 2.71 16 33 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.27 6.53 -2.39 -0.02 1.26 16 40 H 0.42 2.07 8.09 -92.72 -0.75 1.32 16 41 H 0.08 1.08 7.77 -2.39 -0.02 1.06 16 42 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 43 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.18 2.39 8.06 -2.91 -0.02 2.36 16 46 H 0.23 1.47 8.06 -2.91 -0.02 1.45 16 47 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 48 H 0.13 0.11 7.84 -2.38 -0.02 0.09 16 49 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.07 1.95 6.50 -2.38 -0.02 1.94 16 51 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 52 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 Total: -1.00 -77.37 404.77 2.04 -75.33 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.16 Total: 8.89 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 8.16 Total: 2.77 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -8.25 Total: -119.16 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.05 Total: -14.59 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -77.37 2.04 -75.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319028427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.995 kcal (2) G-P(sol) polarization free energy of solvation -77.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds