Wall clock time and date at job start Sat Apr 11 2020 08:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48508 * 109.46999 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47031 * 119.99779 * 3 2 1 6 6 H 1.48498 * 109.47438 * 239.99901 * 3 2 1 7 7 C 1.38810 * 120.00295 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00276 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00223 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00180 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46865 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46975 * 174.91143 * 11 10 9 13 13 H 1.08997 * 109.58902 * 298.55687 * 12 11 10 14 14 C 1.53194 * 109.58856 * 58.98696 * 12 11 10 15 15 C 1.53044 * 109.31321 * 174.41971 * 14 12 11 16 16 C 1.53041 * 109.54049 * 298.63560 * 15 14 12 17 17 C 1.53193 * 109.31168 * 61.36567 * 16 15 14 18 18 N 1.46928 * 108.77413 * 305.36349 * 17 16 15 19 19 C 1.34777 * 120.63326 * 233.58569 * 18 17 16 20 20 O 1.21565 * 120.00315 * 184.89144 * 19 18 17 21 21 C 1.47716 * 119.99798 * 4.88923 * 19 18 17 22 22 C 1.41634 * 126.49988 * 173.43745 * 21 19 18 23 23 C 1.34695 * 105.34001 * 179.97438 * 22 21 19 24 24 N 1.35507 * 107.70895 * 0.02912 * 23 22 21 25 25 N 1.28418 * 109.72133 * 359.72310 * 24 23 22 26 26 C 1.47001 * 123.90035 * 179.97438 * 24 23 22 27 27 C 1.53140 * 108.89129 * 342.34830 * 26 24 23 28 28 C 1.53155 * 109.60269 * 51.10998 * 27 26 24 29 29 C 1.50796 * 127.53999 * 180.02562 * 23 22 21 30 30 H 0.96994 * 120.00374 * 359.97438 * 1 2 3 31 31 H 0.97008 * 119.99685 * 359.97438 * 9 7 2 32 32 H 1.08999 * 109.46792 * 299.99518 * 10 9 7 33 33 H 1.08992 * 109.47541 * 59.99919 * 10 9 7 34 34 H 1.09000 * 109.47474 * 294.91120 * 11 10 9 35 35 H 1.09000 * 109.47125 * 54.91169 * 11 10 9 36 36 H 1.09002 * 109.49623 * 294.37420 * 14 12 11 37 37 H 1.09004 * 109.49784 * 54.47142 * 14 12 11 38 38 H 1.09006 * 109.45707 * 178.61494 * 15 14 12 39 39 H 1.09003 * 109.45401 * 58.65755 * 15 14 12 40 40 H 1.09004 * 109.49409 * 301.41600 * 16 15 14 41 41 H 1.08994 * 109.49476 * 181.31829 * 16 15 14 42 42 H 1.08993 * 109.58750 * 185.58160 * 17 16 15 43 43 H 1.09003 * 109.70398 * 65.22130 * 17 16 15 44 44 H 1.08004 * 127.32723 * 359.92888 * 22 21 19 45 45 H 1.09005 * 109.56842 * 102.16975 * 26 24 23 46 46 H 1.09003 * 109.56699 * 222.40095 * 26 24 23 47 47 H 1.08995 * 109.45212 * 171.15393 * 27 26 24 48 48 H 1.09009 * 109.44772 * 291.09881 * 27 26 24 49 49 H 1.08997 * 109.54386 * 50.28390 * 28 27 26 50 50 H 1.09003 * 109.53554 * 170.45694 * 28 27 26 51 51 H 1.08996 * 109.72049 * 284.12226 * 29 23 22 52 52 H 1.08994 * 109.71513 * 44.77197 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1039 1.6964 1.2126 6 1 3.1039 1.6965 -1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 6 1.8248 -6.1410 -0.1247 13 1 2.3706 -6.1594 -1.0679 14 6 2.8063 -6.2826 1.0429 15 6 3.4623 -7.6642 0.9881 16 6 2.3888 -8.7464 1.1255 17 6 1.4026 -8.6327 -0.0412 18 7 0.8756 -7.2618 -0.0831 19 6 -0.4532 -7.0367 -0.0839 20 8 -0.8778 -5.9044 -0.2084 21 6 -1.3937 -8.1658 0.0664 22 6 -2.7996 -8.0773 0.2141 23 6 -3.2281 -9.3502 0.3149 24 7 -2.1432 -10.1580 0.2333 25 7 -1.0841 -9.4475 0.0832 26 6 -2.2062 -11.6250 0.3038 27 6 -3.5520 -12.0351 0.9087 28 6 -4.6875 -11.3302 0.1608 29 6 -4.6468 -9.8311 0.4879 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 0.0005 32 1 2.6855 -3.7148 -0.8878 33 1 2.6842 -3.7141 0.8921 34 1 0.4985 -4.8140 0.9339 35 1 0.3792 -4.7125 -0.8392 36 1 3.5738 -5.5122 0.9684 37 1 2.2694 -6.1720 1.9851 38 1 4.1794 -7.7584 1.8036 39 1 3.9783 -7.7835 0.0354 40 1 1.8558 -8.6124 2.0669 41 1 2.8593 -9.7294 1.1099 42 1 0.5821 -9.3352 0.1042 43 1 1.9137 -8.8565 -0.9776 44 1 -3.4000 -7.1799 0.2411 45 1 -2.1140 -12.0430 -0.6987 46 1 -1.3944 -11.9956 0.9298 47 1 -3.6752 -13.1145 0.8216 48 1 -3.5790 -11.7503 1.9606 49 1 -4.5617 -11.4738 -0.9123 50 1 -5.6446 -11.7470 0.4747 51 1 -4.9673 -9.6689 1.5170 52 1 -5.3041 -9.2896 -0.1923 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319768441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:11 Heat of formation + Delta-G solvation = 69.585585 kcal Electronic energy + Delta-G solvation = -31143.050229 eV Core-core repulsion = 27144.939569 eV Total energy + Delta-G solvation = -3998.110661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.02210 -40.17670 -37.32573 -36.95275 -35.03038 -33.39577 -32.96462 -32.59839 -30.74626 -30.17947 -29.01773 -27.67770 -25.62542 -24.70038 -23.88332 -23.25603 -22.57803 -21.84930 -20.79938 -20.43846 -19.83884 -18.55510 -17.27066 -16.96230 -16.64287 -16.21262 -15.90958 -15.01940 -14.97774 -14.68576 -14.53956 -14.46922 -14.39374 -14.23702 -13.83271 -13.69858 -13.48372 -13.12018 -13.07270 -12.89067 -12.82975 -12.50270 -12.36267 -12.04036 -11.73490 -11.64051 -11.52378 -11.38817 -11.16648 -11.06821 -10.80064 -10.77343 -10.71522 -10.34993 -10.25833 -9.92882 -9.84833 -9.50865 -9.19404 -9.09377 -8.78199 -8.65831 -8.32297 -6.70543 -5.57645 -2.85394 1.49399 2.02564 2.11891 3.12542 3.54584 3.55049 3.58152 3.60201 3.82077 4.04914 4.13405 4.22065 4.47732 4.64256 4.72214 4.78865 4.79383 4.90190 4.92953 4.99492 5.05381 5.11899 5.16505 5.22123 5.28519 5.38747 5.42012 5.50991 5.53845 5.57916 5.62682 5.72650 5.75119 5.79609 5.90671 5.94689 5.98588 6.09345 6.17035 6.24605 6.37282 6.39916 6.51421 6.52749 6.64157 6.71971 6.91717 7.20056 7.32680 7.60004 7.82801 7.84935 8.45421 8.61582 9.71660 10.34923 10.69985 11.65388 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.002432 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.273152 B =11511.682903 C =13190.058432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.018 4.018 3 Si 0.906 3.094 4 H -0.292 1.292 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.068 0.932 9 N -0.731 5.731 10 C 0.149 3.851 11 C -0.118 4.118 12 C 0.153 3.847 13 H 0.071 0.929 14 C -0.132 4.132 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.073 3.927 18 N -0.596 5.596 19 C 0.595 3.405 20 O -0.507 6.507 21 C -0.002 4.002 22 C -0.174 4.174 23 C 0.015 3.985 24 N -0.288 5.288 25 N -0.266 5.266 26 C 0.121 3.879 27 C -0.136 4.136 28 C -0.127 4.127 29 C -0.053 4.053 30 H 0.254 0.746 31 H 0.386 0.614 32 H 0.012 0.988 33 H 0.015 0.985 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.138 0.862 43 H 0.059 0.941 44 H 0.164 0.836 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.408 -33.798 2.014 34.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.214 4.214 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.366 4.366 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.021 3.979 11 C -0.156 4.156 12 C 0.050 3.950 13 H 0.089 0.911 14 C -0.170 4.170 15 C -0.159 4.159 16 C -0.169 4.169 17 C -0.050 4.050 18 N -0.329 5.329 19 C 0.380 3.620 20 O -0.381 6.381 21 C -0.162 4.162 22 C -0.201 4.201 23 C -0.109 4.109 24 N -0.076 5.076 25 N -0.100 5.100 26 C 0.001 3.999 27 C -0.175 4.175 28 C -0.165 4.165 29 C -0.091 4.091 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.154 0.846 43 H 0.078 0.922 44 H 0.181 0.819 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.112 0.888 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.099 0.901 51 H 0.106 0.894 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.609 -33.927 1.873 34.438 hybrid contribution -0.194 1.336 0.088 1.353 sum -5.803 -32.591 1.961 33.161 Atomic orbital electron populations 1.69673 1.05037 1.25471 1.58026 1.24745 0.95512 0.97565 1.03529 0.86277 0.78460 0.83795 0.77724 1.21767 1.21416 1.21394 1.19209 0.90909 0.84360 1.42166 0.91401 1.42362 1.06078 0.99882 1.89176 1.20791 0.93692 0.86375 0.97081 1.22259 0.97639 0.90837 1.04816 1.21328 0.89469 0.86139 0.98048 0.91058 1.22048 0.98909 0.97055 0.98970 1.21562 0.97529 0.94951 1.01824 1.21871 0.97100 0.98839 0.99044 1.22681 1.00301 0.84192 0.97859 1.47970 1.04778 1.07636 1.72555 1.17112 0.81233 0.86451 0.77186 1.90950 1.77504 1.20827 1.48780 1.22227 0.94565 0.90354 1.09045 1.21355 0.93570 0.96907 1.08303 1.21247 0.91468 0.90471 1.07715 1.45917 1.03436 1.07291 1.51000 1.72957 1.12092 1.03932 1.21012 1.22119 1.00229 0.74033 1.03546 1.21935 0.92683 1.01862 1.00983 1.21700 0.99056 0.94730 1.00999 1.20364 0.89606 0.95704 1.03448 0.93612 0.78056 0.96977 0.96733 0.91420 0.88848 0.89990 0.91499 0.91992 0.91952 0.91907 0.91361 0.84608 0.92219 0.81873 0.89045 0.88261 0.88788 0.90343 0.91058 0.90060 0.89425 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.36 13.06 55.49 0.72 -29.63 16 2 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 3 Si 0.91 23.74 29.55 -169.99 -5.02 18.72 16 4 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.23 -7.15 9.99 -15.06 -0.15 -7.30 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -20.86 5.60 -59.91 -0.34 -21.20 16 10 C 0.15 3.41 5.73 -4.04 -0.02 3.38 16 11 C -0.12 -2.39 3.29 -26.73 -0.09 -2.48 16 12 C 0.15 2.45 3.03 -67.60 -0.20 2.25 16 13 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 14 C -0.13 -1.84 4.82 -26.61 -0.13 -1.97 16 15 C -0.12 -1.33 5.88 -26.69 -0.16 -1.49 16 16 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 17 C 0.07 0.87 6.32 -3.71 -0.02 0.84 16 18 N -0.60 -9.02 2.97 -166.37 -0.49 -9.51 16 19 C 0.59 10.17 7.55 -12.39 -0.09 10.08 16 20 O -0.51 -10.48 12.46 5.31 0.07 -10.42 16 21 C 0.00 -0.03 6.90 -82.68 -0.57 -0.60 16 22 C -0.17 -2.24 10.76 -39.54 -0.43 -2.66 16 23 C 0.01 0.14 6.57 -82.18 -0.54 -0.40 16 24 N -0.29 -2.71 3.74 -56.71 -0.21 -2.92 16 25 N -0.27 -3.21 8.37 33.46 0.28 -2.93 16 26 C 0.12 0.59 7.17 -3.70 -0.03 0.56 16 27 C -0.14 -0.40 5.91 -26.58 -0.16 -0.56 16 28 C -0.13 -0.44 5.98 -26.40 -0.16 -0.60 16 29 C -0.05 -0.30 6.28 -27.58 -0.17 -0.47 16 30 H 0.25 7.94 8.31 -40.82 -0.34 7.60 16 31 H 0.39 11.76 7.67 -40.82 -0.31 11.44 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.01 0.33 6.84 -51.93 -0.36 -0.02 16 34 H 0.07 1.49 7.23 -51.93 -0.38 1.12 16 35 H 0.09 2.13 6.24 -51.93 -0.32 1.80 16 36 H 0.08 1.16 6.87 -51.93 -0.36 0.80 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.14 1.59 3.71 -117.48 -0.44 1.15 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.16 2.06 8.06 -52.48 -0.42 1.63 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 48 H 0.08 0.27 8.11 -51.92 -0.42 -0.15 16 49 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 50 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 51 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -37.21 397.81 -11.07 -48.28 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.89 Total: 7.18 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -3.18 Total: -3.56 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.04 Total: -66.19 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.02 Total: 18.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.21 -11.07 -48.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319768441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.864 kcal (2) G-P(sol) polarization free energy of solvation -37.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds