Wall clock time and date at job start Sat Apr 11 2020 08:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47515 * 185.13327 * 3 2 1 5 5 H 1.48504 * 109.46998 * 305.13533 * 3 2 1 6 6 H 1.48499 * 109.47105 * 65.13096 * 3 2 1 7 7 C 1.38812 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00227 * 178.49620 * 7 2 1 9 9 N 1.36937 * 120.00046 * 358.49042 * 7 2 1 10 10 C 1.46502 * 120.00156 * 187.07116 * 9 7 2 11 11 C 1.52992 * 110.53808 * 64.31854 * 10 9 7 12 12 N 1.46496 * 109.47542 * 296.67607 * 11 10 9 13 13 C 1.34779 * 120.00252 * 272.53505 * 12 11 10 14 14 O 1.21686 * 119.99564 * 5.05266 * 13 12 11 15 15 C 1.46756 * 120.00494 * 185.05128 * 13 12 11 16 16 C 1.36694 * 126.88386 * 172.43787 * 15 13 12 17 17 N 1.33312 * 107.79090 * 179.77704 * 16 15 13 18 18 C 1.30959 * 109.75258 * 359.81662 * 17 16 15 19 19 N 1.34524 * 108.95395 * 0.26673 * 18 17 16 20 20 C 1.46478 * 126.52994 * 179.15273 * 19 18 17 21 21 C 1.53039 * 109.55888 * 28.40478 * 20 19 18 22 22 C 1.52818 * 109.62506 * 270.60840 * 21 20 19 23 23 C 1.52587 * 110.29825 * 61.25347 * 22 21 20 24 24 C 1.50938 * 125.83544 * 181.00246 * 18 17 16 25 25 C 1.54890 * 110.48681 * 301.70755 * 10 9 7 26 26 C 1.54895 * 102.74661 * 279.26605 * 25 10 9 27 27 C 1.54265 * 104.19410 * 322.05563 * 26 25 10 28 28 C 1.53874 * 106.59987 * 23.61364 * 27 26 25 29 29 H 0.97001 * 120.00259 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99564 * 7.07511 * 9 7 2 31 31 H 1.09000 * 109.47116 * 56.67630 * 11 10 9 32 32 H 1.08999 * 109.47547 * 176.66964 * 11 10 9 33 33 H 0.97003 * 120.00165 * 92.52920 * 12 11 10 34 34 H 1.08002 * 126.09945 * 359.76126 * 16 15 13 35 35 H 1.09009 * 109.45262 * 148.42878 * 20 19 18 36 36 H 1.09000 * 109.45656 * 268.39248 * 20 19 18 37 37 H 1.08995 * 109.44441 * 30.65919 * 21 20 19 38 38 H 1.09003 * 109.44284 * 150.56174 * 21 20 19 39 39 H 1.09005 * 109.33307 * 181.50199 * 22 21 20 40 40 H 1.09001 * 109.33504 * 300.99707 * 22 21 20 41 41 H 1.08995 * 109.45669 * 153.43795 * 23 22 21 42 42 H 1.09003 * 109.45310 * 273.39863 * 23 22 21 43 43 H 1.08996 * 109.50431 * 346.46675 * 24 18 17 44 44 H 1.08996 * 109.50844 * 106.59384 * 24 18 17 45 45 H 1.09000 * 110.75336 * 37.57547 * 25 10 9 46 46 H 1.08995 * 110.75508 * 160.95270 * 25 10 9 47 47 H 1.09004 * 110.48159 * 203.37932 * 26 25 10 48 48 H 1.08999 * 110.49106 * 80.73788 * 26 25 10 49 49 H 1.08999 * 110.03343 * 264.32589 * 27 26 25 50 50 H 1.09004 * 110.03175 * 142.90021 * 27 26 25 51 51 H 1.09003 * 110.03248 * 240.71344 * 28 27 26 52 52 H 1.09002 * 110.02862 * 119.28335 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7053 1.3492 -0.1253 5 1 1.7999 2.4493 -1.1450 6 1 1.9878 2.3408 1.2702 7 6 2.0102 -1.2021 -0.0005 8 1 3.0900 -1.2023 -0.0251 9 7 1.3260 -2.3879 0.0302 10 6 2.0537 -3.6498 0.1859 11 6 2.7483 -3.7043 1.5480 12 7 3.7522 -2.6404 1.6272 13 6 5.0038 -2.8600 1.1779 14 8 5.2759 -3.9083 0.6232 15 6 6.0385 -1.8348 1.3576 16 6 7.3732 -1.9608 1.0911 17 7 7.9590 -0.8004 1.3871 18 6 7.0626 0.0497 1.8219 19 7 5.8578 -0.5488 1.8240 20 6 4.5899 0.0454 2.2542 21 6 4.6348 1.5600 2.0392 22 6 5.1951 2.2392 3.2883 23 6 6.6183 1.7599 3.5582 24 6 7.3263 1.4764 2.2380 25 6 3.0854 -3.8251 -0.9561 26 6 2.2146 -4.3460 -2.1264 27 6 1.1996 -5.2913 -1.4511 28 6 1.0973 -4.8487 0.0191 29 1 -0.4850 0.8400 0.0004 30 1 0.3594 -2.3922 -0.0512 31 1 2.0100 -3.5668 2.3380 32 1 3.2343 -4.6723 1.6695 33 1 3.5162 -1.7778 2.0030 34 1 7.8654 -2.8430 0.7092 35 1 3.7732 -0.3800 1.6709 36 1 4.4299 -0.1665 3.3113 37 1 5.2735 1.7865 1.1855 38 1 3.6275 1.9291 1.8463 39 1 5.2001 3.3192 3.1402 40 1 4.5646 1.9977 4.1440 41 1 7.1635 2.5301 4.1038 42 1 6.5872 0.8469 4.1528 43 1 8.3993 1.6293 2.3536 44 1 6.9414 2.1547 1.4766 45 1 3.5446 -2.8702 -1.2116 46 1 3.8435 -4.5588 -0.6824 47 1 2.8269 -4.8929 -2.8434 48 1 1.6991 -3.5196 -2.6157 49 1 1.5535 -6.3207 -1.5073 50 1 0.2274 -5.2033 -1.9361 51 1 1.4016 -5.6633 0.6763 52 1 0.0755 -4.5458 0.2475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714494937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:05 Heat of formation + Delta-G solvation = 45.364978 kcal Electronic energy + Delta-G solvation = -33672.025847 eV Core-core repulsion = 29672.864902 eV Total energy + Delta-G solvation = -3999.160945 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33383 -39.43983 -37.70143 -37.28829 -34.58323 -33.58695 -33.10428 -30.92129 -30.64359 -29.55966 -28.37991 -27.75169 -26.06086 -24.87473 -24.35690 -23.54597 -21.85340 -20.38089 -20.20697 -19.92596 -19.74242 -18.55685 -17.49168 -16.99671 -16.20397 -15.84789 -15.67035 -15.61649 -15.14933 -14.82316 -14.68409 -14.33677 -14.02664 -13.71127 -13.58951 -13.36760 -13.18866 -13.08746 -12.78547 -12.77364 -12.44370 -12.09419 -11.87513 -11.63982 -11.48510 -11.24967 -11.01773 -10.88373 -10.76499 -10.58061 -10.57172 -10.46543 -10.28330 -10.20666 -10.09588 -9.94815 -9.90195 -9.76615 -9.49471 -9.37969 -8.97397 -8.44465 -8.15567 -7.04799 -5.94852 -3.20999 1.59484 2.71337 3.02032 3.07705 3.20267 3.28403 3.64585 3.76226 4.25089 4.34644 4.44713 4.52239 4.65419 4.87504 4.98884 5.05751 5.17938 5.21781 5.29525 5.34367 5.36140 5.42290 5.47790 5.51486 5.61878 5.68828 5.70484 5.83308 5.85448 5.89219 5.90859 6.00446 6.05528 6.13034 6.14838 6.18917 6.25927 6.29921 6.33824 6.39959 6.53558 6.65537 6.74892 6.83785 6.89446 6.98022 7.13588 7.19736 7.24458 7.54920 7.93762 8.15027 8.26228 8.64786 9.33621 9.99287 10.36260 11.27138 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.005394 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.022464 B = 5189.403735 C = 6954.213667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.014 4.014 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.230 4.230 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.182 3.818 11 C 0.113 3.887 12 N -0.706 5.706 13 C 0.588 3.412 14 O -0.534 6.534 15 C -0.083 4.083 16 C 0.055 3.945 17 N -0.499 5.499 18 C 0.228 3.772 19 N -0.427 5.427 20 C 0.076 3.924 21 C -0.154 4.154 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.039 4.039 25 C -0.126 4.126 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.119 4.119 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.400 0.600 34 H 0.180 0.820 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.061 0.939 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 0.104 7.180 10.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.211 4.211 3 Si 0.712 3.288 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.361 4.361 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.089 3.911 11 C -0.013 4.013 12 N -0.360 5.360 13 C 0.375 3.625 14 O -0.411 6.411 15 C -0.198 4.198 16 C -0.099 4.099 17 N -0.218 5.218 18 C -0.034 4.034 19 N -0.110 5.110 20 C -0.046 4.046 21 C -0.191 4.191 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.078 4.078 25 C -0.166 4.166 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.158 4.158 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.241 0.759 34 H 0.197 0.803 35 H 0.139 0.861 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.079 0.921 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.808 -0.288 6.797 11.129 hybrid contribution -1.096 1.322 0.014 1.717 sum 7.712 1.034 6.811 10.341 Atomic orbital electron populations 1.69636 1.04858 1.25371 1.57240 1.24758 0.95415 0.97174 1.03707 0.86884 0.79351 0.85481 0.77083 1.19514 1.22205 1.21350 1.19268 0.91059 0.84017 1.41782 0.91047 1.42418 1.05983 0.99864 1.86859 1.20847 0.91301 0.86817 0.92100 1.22112 0.89749 0.89816 0.99610 1.46286 1.09626 1.17671 1.62367 1.16771 0.81420 0.85475 0.78881 1.90744 1.81282 1.26326 1.42796 1.21340 0.97817 0.86616 1.14076 1.22484 0.89300 0.96811 1.01294 1.70123 1.31565 1.01430 1.18696 1.23309 0.80359 0.97255 1.02458 1.45472 1.08788 1.10494 1.46264 1.22545 0.84550 0.95499 1.01965 1.22498 1.04218 0.92819 0.99583 1.21654 0.96048 1.00761 0.97779 1.21498 0.95839 1.02056 0.96657 1.20145 1.02662 0.87097 0.97906 1.23050 0.97401 1.00983 0.95141 1.22245 0.97119 0.98264 0.97858 1.22022 0.99093 0.98472 0.95741 1.22277 0.99777 0.97325 0.96428 0.93492 0.78180 0.91027 0.91181 0.75891 0.80259 0.86095 0.89191 0.89704 0.88881 0.90952 0.91082 0.90356 0.91585 0.88407 0.89307 0.92210 0.90457 0.93391 0.91818 0.92857 0.92689 0.92069 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.36 13.07 55.49 0.73 -24.64 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.88 19.43 24.67 -169.99 -4.19 15.23 16 4 H -0.27 -5.59 5.50 56.52 0.31 -5.27 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -5.98 6.39 56.52 0.36 -5.62 16 7 C -0.23 -5.52 6.97 -15.06 -0.10 -5.62 16 8 H 0.07 1.72 4.74 -52.49 -0.25 1.47 16 9 N -0.71 -15.86 5.14 -45.70 -0.23 -16.09 16 10 C 0.18 3.43 0.80 -130.16 -0.10 3.32 16 11 C 0.11 1.98 5.26 -4.05 -0.02 1.96 16 12 N -0.71 -12.62 3.17 -61.60 -0.20 -12.82 16 13 C 0.59 11.06 6.87 -12.82 -0.09 10.97 16 14 O -0.53 -10.88 13.61 5.20 0.07 -10.81 16 15 C -0.08 -1.47 6.90 -82.21 -0.57 -2.04 16 16 C 0.06 0.95 11.67 -17.47 -0.20 0.74 16 17 N -0.50 -8.43 11.20 -10.47 -0.12 -8.55 16 18 C 0.23 3.48 6.83 -155.39 -1.06 2.42 16 19 N -0.43 -6.87 3.10 -109.84 -0.34 -7.21 16 20 C 0.08 1.15 5.01 -4.03 -0.02 1.13 16 21 C -0.15 -2.15 3.59 -26.80 -0.10 -2.25 16 22 C -0.12 -1.28 5.67 -27.04 -0.15 -1.43 16 23 C -0.12 -1.15 5.65 -27.22 -0.15 -1.31 16 24 C -0.04 -0.44 5.54 -28.04 -0.16 -0.60 16 25 C -0.13 -2.50 4.21 -24.74 -0.10 -2.60 16 26 C -0.12 -2.11 6.79 -25.07 -0.17 -2.28 16 27 C -0.12 -1.83 6.80 -25.61 -0.17 -2.00 16 28 C -0.12 -1.95 6.05 -25.61 -0.16 -2.10 16 29 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.38 9.33 7.48 -40.82 -0.31 9.03 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.18 7.50 -51.93 -0.39 0.79 16 33 H 0.40 7.06 3.96 -40.82 -0.16 6.90 16 34 H 0.18 2.78 8.06 -52.49 -0.42 2.35 16 35 H 0.12 2.14 2.65 -51.92 -0.14 2.00 16 36 H 0.09 1.14 7.82 -51.93 -0.41 0.74 16 37 H 0.08 1.24 5.25 -51.93 -0.27 0.96 16 38 H 0.09 1.47 3.68 -51.93 -0.19 1.28 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.68 7.84 -51.93 -0.41 0.27 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.96 6.28 -51.93 -0.33 0.64 16 45 H 0.06 1.36 6.64 -51.93 -0.34 1.02 16 46 H 0.08 1.56 5.90 -51.93 -0.31 1.25 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 52 H 0.06 1.07 7.73 -51.93 -0.40 0.67 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -28.77 367.92 -9.96 -38.74 By element: Atomic # 1 Polarization: 30.54 SS G_CDS: -7.79 Total: 22.74 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -3.43 Total: -2.15 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.16 Total: -69.30 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.19 Total: 15.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.77 -9.96 -38.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714494937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.102 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds