Wall clock time and date at job start Sat Apr 11 2020 08:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48499 * 109.47515 * 185.13327 * 3 2 1 5 5 H 1.48504 * 109.46998 * 305.13533 * 3 2 1 6 6 H 1.48499 * 109.47105 * 65.13096 * 3 2 1 7 7 C 1.38812 * 120.00219 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00227 * 178.49620 * 7 2 1 9 9 N 1.36937 * 120.00046 * 358.49042 * 7 2 1 10 10 C 1.46502 * 120.00156 * 187.07116 * 9 7 2 11 11 C 1.52992 * 110.53808 * 64.31854 * 10 9 7 12 12 N 1.46496 * 109.47542 * 296.67607 * 11 10 9 13 13 C 1.34779 * 120.00252 * 272.53505 * 12 11 10 14 14 O 1.21686 * 119.99564 * 5.05266 * 13 12 11 15 15 C 1.46756 * 120.00494 * 185.05128 * 13 12 11 16 16 C 1.36694 * 126.88386 * 172.43787 * 15 13 12 17 17 N 1.33312 * 107.79090 * 179.77704 * 16 15 13 18 18 C 1.30959 * 109.75258 * 359.81662 * 17 16 15 19 19 N 1.34524 * 108.95395 * 0.26673 * 18 17 16 20 20 C 1.46478 * 126.52994 * 179.15273 * 19 18 17 21 21 C 1.53039 * 109.55888 * 28.40478 * 20 19 18 22 22 C 1.52818 * 109.62506 * 270.60840 * 21 20 19 23 23 C 1.52587 * 110.29825 * 61.25347 * 22 21 20 24 24 C 1.50938 * 125.83544 * 181.00246 * 18 17 16 25 25 C 1.54890 * 110.48681 * 301.70755 * 10 9 7 26 26 C 1.54895 * 102.74661 * 279.26605 * 25 10 9 27 27 C 1.54265 * 104.19410 * 322.05563 * 26 25 10 28 28 C 1.53874 * 106.59987 * 23.61364 * 27 26 25 29 29 H 0.97001 * 120.00259 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99564 * 7.07511 * 9 7 2 31 31 H 1.09000 * 109.47116 * 56.67630 * 11 10 9 32 32 H 1.08999 * 109.47547 * 176.66964 * 11 10 9 33 33 H 0.97003 * 120.00165 * 92.52920 * 12 11 10 34 34 H 1.08002 * 126.09945 * 359.76126 * 16 15 13 35 35 H 1.09009 * 109.45262 * 148.42878 * 20 19 18 36 36 H 1.09000 * 109.45656 * 268.39248 * 20 19 18 37 37 H 1.08995 * 109.44441 * 30.65919 * 21 20 19 38 38 H 1.09003 * 109.44284 * 150.56174 * 21 20 19 39 39 H 1.09005 * 109.33307 * 181.50199 * 22 21 20 40 40 H 1.09001 * 109.33504 * 300.99707 * 22 21 20 41 41 H 1.08995 * 109.45669 * 153.43795 * 23 22 21 42 42 H 1.09003 * 109.45310 * 273.39863 * 23 22 21 43 43 H 1.08996 * 109.50431 * 346.46675 * 24 18 17 44 44 H 1.08996 * 109.50844 * 106.59384 * 24 18 17 45 45 H 1.09000 * 110.75336 * 37.57547 * 25 10 9 46 46 H 1.08995 * 110.75508 * 160.95270 * 25 10 9 47 47 H 1.09004 * 110.48159 * 203.37932 * 26 25 10 48 48 H 1.08999 * 110.49106 * 80.73788 * 26 25 10 49 49 H 1.08999 * 110.03343 * 264.32589 * 27 26 25 50 50 H 1.09004 * 110.03175 * 142.90021 * 27 26 25 51 51 H 1.09003 * 110.03248 * 240.71344 * 28 27 26 52 52 H 1.09002 * 110.02862 * 119.28335 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7053 1.3492 -0.1253 5 1 1.7999 2.4493 -1.1450 6 1 1.9878 2.3408 1.2702 7 6 2.0102 -1.2021 -0.0005 8 1 3.0900 -1.2023 -0.0251 9 7 1.3260 -2.3879 0.0302 10 6 2.0537 -3.6498 0.1859 11 6 2.7483 -3.7043 1.5480 12 7 3.7522 -2.6404 1.6272 13 6 5.0038 -2.8600 1.1779 14 8 5.2759 -3.9083 0.6232 15 6 6.0385 -1.8348 1.3576 16 6 7.3732 -1.9608 1.0911 17 7 7.9590 -0.8004 1.3871 18 6 7.0626 0.0497 1.8219 19 7 5.8578 -0.5488 1.8240 20 6 4.5899 0.0454 2.2542 21 6 4.6348 1.5600 2.0392 22 6 5.1951 2.2392 3.2883 23 6 6.6183 1.7599 3.5582 24 6 7.3263 1.4764 2.2380 25 6 3.0854 -3.8251 -0.9561 26 6 2.2146 -4.3460 -2.1264 27 6 1.1996 -5.2913 -1.4511 28 6 1.0973 -4.8487 0.0191 29 1 -0.4850 0.8400 0.0004 30 1 0.3594 -2.3922 -0.0512 31 1 2.0100 -3.5668 2.3380 32 1 3.2343 -4.6723 1.6695 33 1 3.5162 -1.7778 2.0030 34 1 7.8654 -2.8430 0.7092 35 1 3.7732 -0.3800 1.6709 36 1 4.4299 -0.1665 3.3113 37 1 5.2735 1.7865 1.1855 38 1 3.6275 1.9291 1.8463 39 1 5.2001 3.3192 3.1402 40 1 4.5646 1.9977 4.1440 41 1 7.1635 2.5301 4.1038 42 1 6.5872 0.8469 4.1528 43 1 8.3993 1.6293 2.3536 44 1 6.9414 2.1547 1.4766 45 1 3.5446 -2.8702 -1.2116 46 1 3.8435 -4.5588 -0.6824 47 1 2.8269 -4.8929 -2.8434 48 1 1.6991 -3.5196 -2.6157 49 1 1.5535 -6.3207 -1.5073 50 1 0.2274 -5.2033 -1.9361 51 1 1.4016 -5.6633 0.6763 52 1 0.0755 -4.5458 0.2475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714494937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:05 Heat of formation + Delta-G solvation = 27.964912 kcal Electronic energy + Delta-G solvation = -33672.780371 eV Core-core repulsion = 29672.864902 eV Total energy + Delta-G solvation = -3999.915468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.57767 -40.92390 -39.12206 -38.38547 -35.96614 -35.12936 -34.57968 -32.34094 -32.01888 -30.82662 -29.90214 -29.22348 -27.17311 -26.20222 -25.64051 -25.28219 -23.20199 -21.71621 -21.36266 -21.18694 -20.91031 -20.11807 -19.06086 -18.58792 -17.44282 -17.29917 -16.95191 -16.88972 -16.48904 -16.22028 -15.92788 -15.73809 -15.39354 -15.19659 -15.10664 -14.61302 -14.56369 -14.39007 -14.01695 -13.96202 -13.78628 -13.35302 -13.26580 -13.16607 -12.84542 -12.38171 -12.36531 -12.24111 -12.21979 -11.97034 -11.87542 -11.79248 -11.68860 -11.61884 -11.51873 -11.45409 -11.37306 -11.19283 -10.87141 -10.84390 -10.69879 -9.94928 -9.48542 -8.90078 -7.91070 -5.16639 0.27167 1.28220 1.42625 1.45658 1.49375 1.74770 2.23843 2.35174 2.50919 3.23003 3.36121 3.36860 3.46220 3.62738 3.75824 3.85412 3.86079 3.95319 4.01633 4.13293 4.17012 4.20655 4.21827 4.32999 4.44109 4.52539 4.62719 4.70341 4.71513 4.73311 4.75708 4.77442 4.86854 4.90650 4.92574 5.02790 5.04591 5.13258 5.15240 5.18527 5.22179 5.28428 5.30889 5.40840 5.45950 5.50195 5.52520 5.62406 5.70247 6.01047 6.31699 6.51417 6.86133 7.18788 7.35996 8.15636 8.42734 9.31520 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.005394 C = 0.004025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.022464 B = 5189.403735 C = 6954.213667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.070 4.070 3 Si 0.930 3.070 4 H -0.255 1.255 5 H -0.322 1.322 6 H -0.266 1.266 7 C -0.207 4.207 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.175 3.825 11 C 0.113 3.887 12 N -0.704 5.704 13 C 0.588 3.412 14 O -0.556 6.556 15 C -0.110 4.110 16 C 0.053 3.947 17 N -0.518 5.518 18 C 0.236 3.764 19 N -0.428 5.428 20 C 0.075 3.925 21 C -0.155 4.155 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.042 4.042 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.110 4.110 28 C -0.116 4.116 29 H 0.247 0.753 30 H 0.373 0.627 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.188 0.812 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.058 0.942 43 H 0.115 0.885 44 H 0.096 0.904 45 H 0.020 0.980 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.036 0.964 49 H 0.079 0.921 50 H 0.060 0.940 51 H 0.088 0.912 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.173 0.363 8.861 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.262 4.262 3 Si 0.763 3.237 4 H -0.179 1.179 5 H -0.252 1.252 6 H -0.194 1.194 7 C -0.339 4.339 8 H 0.087 0.913 9 N -0.356 5.356 10 C 0.084 3.916 11 C -0.012 4.012 12 N -0.357 5.357 13 C 0.375 3.625 14 O -0.436 6.436 15 C -0.226 4.226 16 C -0.102 4.102 17 N -0.237 5.237 18 C -0.027 4.027 19 N -0.111 5.111 20 C -0.047 4.047 21 C -0.192 4.192 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.080 4.080 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.147 4.147 28 C -0.154 4.154 29 H 0.056 0.944 30 H 0.206 0.794 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.243 0.757 34 H 0.205 0.795 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.133 0.867 44 H 0.114 0.886 45 H 0.039 0.961 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.097 0.903 50 H 0.078 0.922 51 H 0.106 0.894 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.107 -0.053 8.508 13.211 hybrid contribution -1.402 1.185 -0.566 1.921 sum 8.704 1.132 7.942 11.837 Atomic orbital electron populations 1.69789 1.06230 1.25317 1.59910 1.25339 0.96012 0.99933 1.04962 0.86138 0.79053 0.81926 0.76609 1.17936 1.25188 1.19352 1.19399 0.90898 0.84637 1.38990 0.91262 1.42561 1.05523 1.00755 1.86723 1.21078 0.91619 0.86446 0.92473 1.22098 0.89913 0.90329 0.98898 1.46290 1.09541 1.17847 1.62071 1.16927 0.81748 0.85457 0.78370 1.90711 1.81719 1.27296 1.43865 1.21272 0.97783 0.87496 1.16016 1.22726 0.89315 0.97392 1.00756 1.70161 1.32169 1.01627 1.19781 1.24197 0.79629 0.98476 1.00352 1.45536 1.09412 1.09943 1.46217 1.22597 0.83235 0.96197 1.02658 1.22476 1.03217 0.92019 1.01481 1.21664 0.96468 1.01497 0.96069 1.21478 0.95393 1.02735 0.95585 1.20415 1.04164 0.84367 0.99089 1.22901 0.97564 0.98867 0.96299 1.22224 0.97508 0.98134 0.97616 1.22008 0.98649 0.99104 0.94974 1.22287 0.98943 0.96796 0.97423 0.94422 0.79446 0.89860 0.90049 0.75724 0.79501 0.88935 0.86947 0.90507 0.90691 0.88999 0.89961 0.87125 0.92334 0.86694 0.88602 0.96113 0.90544 0.91913 0.94508 0.90266 0.92165 0.89368 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.33 13.07 21.65 0.28 -54.04 16 2 C -0.07 -3.63 5.50 84.86 0.47 -3.17 16 3 Si 0.93 40.90 24.67 68.60 1.69 42.59 16 4 H -0.26 -10.34 5.50 99.48 0.55 -9.79 16 5 H -0.32 -15.56 7.11 99.48 0.71 -14.85 16 6 H -0.27 -10.75 6.39 99.48 0.64 -10.11 16 7 C -0.21 -10.14 6.97 84.03 0.59 -9.56 16 8 H 0.07 3.42 4.74 -2.91 -0.01 3.41 16 9 N -0.72 -32.45 5.14 -298.51 -1.53 -33.99 16 10 C 0.18 6.53 0.80 4.68 0.00 6.53 16 11 C 0.11 3.86 5.26 86.38 0.45 4.32 16 12 N -0.70 -25.12 3.17 -467.02 -1.48 -26.60 16 13 C 0.59 22.20 6.87 86.47 0.59 22.80 16 14 O -0.56 -22.82 13.61 -4.30 -0.06 -22.88 16 15 C -0.11 -3.91 6.90 40.04 0.28 -3.63 16 16 C 0.05 1.79 11.67 84.11 0.98 2.78 16 17 N -0.52 -16.95 11.20 -187.05 -2.10 -19.05 16 18 C 0.24 6.79 6.83 138.23 0.94 7.73 16 19 N -0.43 -13.36 3.10 -501.43 -1.55 -14.91 16 20 C 0.07 2.15 5.01 86.40 0.43 2.58 16 21 C -0.15 -3.98 3.59 30.55 0.11 -3.87 16 22 C -0.12 -2.00 5.67 30.40 0.17 -1.83 16 23 C -0.11 -1.70 5.65 30.28 0.17 -1.53 16 24 C -0.04 -0.81 5.54 29.75 0.16 -0.64 16 25 C -0.12 -4.65 4.21 31.89 0.13 -4.52 16 26 C -0.12 -4.19 6.79 31.67 0.22 -3.97 16 27 C -0.11 -3.26 6.80 31.32 0.21 -3.05 16 28 C -0.12 -3.58 6.05 31.32 0.19 -3.39 16 29 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 30 H 0.37 18.50 7.48 -92.71 -0.69 17.81 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.08 2.61 7.50 -2.39 -0.02 2.59 16 33 H 0.40 14.14 3.96 -92.71 -0.37 13.77 16 34 H 0.19 5.83 8.06 -2.91 -0.02 5.80 16 35 H 0.09 3.25 2.65 -2.38 -0.01 3.24 16 36 H 0.11 2.66 7.82 -2.39 -0.02 2.64 16 37 H 0.08 2.08 5.25 -2.39 -0.01 2.07 16 38 H 0.07 2.22 3.68 -2.39 -0.01 2.21 16 39 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 0.99 7.84 -2.39 -0.02 0.98 16 43 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.10 1.78 6.28 -2.39 -0.01 1.77 16 45 H 0.02 0.96 6.64 -2.39 -0.02 0.94 16 46 H 0.08 3.07 5.90 -2.39 -0.01 3.06 16 47 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 51 H 0.09 2.26 7.78 -2.39 -0.02 2.24 16 52 H 0.06 2.00 7.73 -2.39 -0.02 1.98 16 Total: -1.00 -64.55 367.92 1.05 -63.50 By element: Atomic # 1 Polarization: 58.10 SS G_CDS: -0.32 Total: 57.78 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 6.11 Total: 7.59 kcal Atomic # 7 Polarization: -142.22 SS G_CDS: -6.38 Total: -148.59 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.06 Total: -22.88 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.69 Total: 42.59 kcal Total: -64.55 1.05 -63.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714494937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.469 kcal (2) G-P(sol) polarization free energy of solvation -64.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds