Wall clock time and date at job start Sat Apr 11 2020 08:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47023 * 125.64945 * 359.69059 * 9 7 2 11 11 C 1.54333 * 107.26879 * 178.84833 * 10 9 7 12 12 C 1.55156 * 103.01719 * 338.14792 * 11 10 9 13 13 H 1.09001 * 111.00470 * 277.22613 * 12 11 10 14 14 C 1.53007 * 111.03634 * 153.39453 * 12 11 10 15 15 C 1.52999 * 109.47237 * 181.33036 * 14 12 11 16 16 N 1.46492 * 109.47375 * 180.02562 * 15 14 12 17 17 C 1.34778 * 120.00195 * 180.02562 * 16 15 14 18 18 O 1.21272 * 119.99868 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99651 * 179.97438 * 17 16 15 20 20 C 1.50704 * 109.46556 * 179.97438 * 19 17 16 21 21 C 1.34855 * 125.96262 * 124.71536 * 20 19 17 22 22 N 1.36313 * 106.69060 * 179.88565 * 21 20 19 23 23 C 1.35425 * 107.39593 * 0.40329 * 22 21 20 24 24 N 1.30089 * 108.62800 * 359.71747 * 23 22 21 25 25 C 1.51040 * 123.98079 * 179.67527 * 23 22 21 26 26 C 1.53394 * 108.21647 * 344.08460 * 25 23 22 27 27 C 1.53156 * 109.24503 * 48.79634 * 26 25 23 28 28 C 1.46466 * 127.77717 * 180.22437 * 22 21 20 29 29 C 1.47419 * 125.64885 * 180.02562 * 9 7 2 30 30 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88481 * 298.40177 * 10 9 7 32 32 H 1.09001 * 109.87735 * 59.56334 * 10 9 7 33 33 H 1.08995 * 110.85471 * 219.68094 * 11 10 9 34 34 H 1.08998 * 110.66098 * 96.52457 * 11 10 9 35 35 H 1.08998 * 109.46746 * 301.32660 * 14 12 11 36 36 H 1.08997 * 109.46979 * 61.32718 * 14 12 11 37 37 H 1.09008 * 109.46544 * 299.99820 * 15 14 12 38 38 H 1.08995 * 109.47233 * 59.99180 * 15 14 12 39 39 H 0.97005 * 120.00182 * 359.97438 * 16 15 14 40 40 H 1.08998 * 109.47069 * 299.99603 * 19 17 16 41 41 H 1.08998 * 109.47533 * 60.00149 * 19 17 16 42 42 H 1.08006 * 126.65527 * 0.02562 * 21 20 19 43 43 H 1.09000 * 109.71662 * 103.74785 * 25 23 22 44 44 H 1.09000 * 109.71585 * 224.38789 * 25 23 22 45 45 H 1.08990 * 109.50187 * 288.87084 * 26 25 23 46 46 H 1.09000 * 109.55218 * 168.75214 * 26 25 23 47 47 H 1.09003 * 109.46568 * 170.50903 * 27 26 25 48 48 H 1.09007 * 109.46686 * 50.52900 * 27 26 25 49 49 H 1.09003 * 109.58781 * 282.88220 * 28 22 21 50 50 H 1.09003 * 109.58546 * 43.15877 * 28 22 21 51 51 H 1.09000 * 110.36612 * 322.93177 * 29 9 7 52 52 H 1.08999 * 110.37105 * 85.25388 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.1375 -2.5327 0.0176 11 6 -0.4488 -4.0441 -0.0103 12 6 0.8488 -4.6573 -0.5999 13 1 0.8486 -4.5996 -1.6884 14 6 1.0366 -6.1013 -0.1303 15 6 2.3405 -6.6589 -0.7045 16 7 2.5200 -8.0417 -0.2554 17 6 3.6073 -8.7393 -0.6396 18 8 4.4369 -8.2224 -1.3575 19 6 3.7922 -10.1616 -0.1770 20 6 5.0765 -10.7109 -0.7428 21 6 6.0886 -11.2489 -0.0324 22 7 7.0450 -11.6174 -0.9310 23 6 6.5923 -11.2851 -2.1633 24 7 5.4152 -10.7447 -2.0418 25 6 7.3651 -11.5227 -3.4391 26 6 8.8275 -11.8008 -3.0691 27 6 8.8757 -12.8551 -1.9592 28 6 8.3362 -12.2524 -0.6575 29 6 1.9333 -3.7311 0.0054 30 1 -0.4849 0.8401 0.0004 31 1 -0.5464 -2.0847 0.9232 32 1 -0.5653 -2.0518 -0.8621 33 1 -1.3018 -4.2527 -0.6558 34 1 -0.6288 -4.4184 0.9975 35 1 1.0791 -6.1265 0.9586 36 1 0.1990 -6.7074 -0.4754 37 1 2.2980 -6.6336 -1.7935 38 1 3.1780 -6.0527 -0.3595 39 1 1.8567 -8.4551 0.3192 40 1 3.8343 -10.1869 0.9119 41 1 2.9548 -10.7679 -0.5224 42 1 6.1320 -11.3672 1.0403 43 1 6.9497 -12.3816 -3.9662 44 1 7.3080 -10.6383 -4.0737 45 1 9.2953 -10.8811 -2.7180 46 1 9.3616 -12.1696 -3.9448 47 1 9.9058 -13.1789 -1.8102 48 1 8.2637 -13.7109 -2.2443 49 1 9.0375 -11.5074 -0.2816 50 1 8.2063 -13.0393 0.0855 51 1 2.8302 -3.7420 -0.6140 52 1 2.1707 -4.0397 1.0235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714863152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:09 Heat of formation + Delta-G solvation = 32.090725 kcal Electronic energy + Delta-G solvation = -29347.764211 eV Core-core repulsion = 25348.027651 eV Total energy + Delta-G solvation = -3999.736560 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53455 -39.46369 -37.73260 -37.01177 -35.01709 -33.52094 -32.95358 -32.09807 -30.67549 -29.28692 -28.90001 -27.78085 -26.26188 -24.67533 -24.17877 -22.61788 -22.30630 -21.09345 -20.08225 -19.90293 -19.43693 -19.22007 -17.26243 -16.88265 -16.78804 -16.11942 -15.71809 -15.68629 -15.08626 -14.71979 -14.61542 -14.51699 -14.45470 -14.02643 -13.97124 -13.73735 -13.64946 -13.34011 -12.75913 -12.51389 -12.35271 -12.18351 -11.99104 -11.82307 -11.74378 -11.65767 -11.55318 -11.47221 -11.42716 -10.98276 -10.80161 -10.71458 -10.05156 -10.02216 -9.93388 -9.85639 -9.72059 -9.67804 -9.59404 -9.50313 -8.88921 -8.52751 -8.38271 -6.73651 -5.63562 -2.96216 1.82611 2.50066 2.82441 2.89429 3.43726 3.44946 3.50453 3.53075 3.91642 4.04787 4.12566 4.20244 4.57046 4.58268 4.73459 4.78399 4.82835 4.89346 4.97223 5.05797 5.13298 5.18038 5.21440 5.22655 5.31271 5.36933 5.40582 5.48513 5.56080 5.64520 5.71842 5.72290 5.76944 5.87444 6.00292 6.11578 6.12289 6.25385 6.32916 6.47322 6.55150 6.58665 6.64995 6.69652 6.83034 6.98745 7.07089 7.62927 7.65244 7.72278 7.91084 8.02981 8.34774 8.42032 9.30888 9.91425 10.58209 11.48358 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.001640 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.169692 B =17066.276676 C =18080.876959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.075 0.925 14 C -0.115 4.115 15 C 0.120 3.880 16 N -0.735 5.735 17 C 0.511 3.489 18 O -0.519 6.519 19 C -0.053 4.053 20 C 0.017 3.983 21 C -0.051 4.051 22 N -0.458 5.458 23 C 0.206 3.794 24 N -0.458 5.458 25 C -0.033 4.033 26 C -0.126 4.126 27 C -0.134 4.134 28 C 0.104 3.896 29 C 0.140 3.860 30 H 0.250 0.750 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.173 0.827 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.037 0.963 52 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.214 -32.407 -0.246 34.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.004 4.004 16 N -0.388 5.388 17 C 0.296 3.704 18 O -0.393 6.393 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.184 4.184 22 N -0.142 5.142 23 C -0.056 4.056 24 N -0.176 5.176 25 C -0.072 4.072 26 C -0.164 4.164 27 C -0.172 4.172 28 C -0.019 4.019 29 C 0.014 3.986 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.230 0.770 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.190 0.810 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.056 0.944 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 13.451 -31.559 -1.377 34.333 hybrid contribution 0.529 0.494 1.201 1.402 sum 13.980 -31.064 -0.177 34.066 Atomic orbital electron populations 1.69987 1.04847 1.24736 1.57561 1.24802 0.95735 0.97633 1.02563 0.86045 0.78748 0.83863 0.77166 1.20525 1.21811 1.21840 1.19136 0.90488 0.82527 1.43120 0.90448 1.44507 1.01777 0.99993 1.87071 1.21132 0.84365 0.88418 1.00875 1.22897 0.96006 0.99451 0.99296 1.22272 0.97530 0.92093 1.00161 0.90636 1.21728 0.95973 0.96691 1.00905 1.21425 0.98446 0.80914 0.99568 1.46074 1.24564 1.14899 1.53285 1.20421 0.81432 0.87795 0.80757 1.90745 1.42521 1.70539 1.35515 1.19862 0.95045 0.93401 1.01091 1.19927 0.96686 1.04978 0.89680 1.22183 0.90992 1.09117 0.96065 1.45294 1.15479 1.46112 1.07318 1.23263 0.92888 1.02069 0.87417 1.69939 1.11370 1.17248 1.19023 1.20174 0.92388 1.03716 0.90956 1.21681 0.96250 0.99418 0.99081 1.21894 1.02433 0.99052 0.93817 1.21954 0.82879 0.97855 0.99191 1.21608 0.94369 0.86052 0.96601 0.93930 0.94206 0.93650 0.92383 0.92649 0.91425 0.91733 0.91663 0.91210 0.76969 0.87967 0.88025 0.80960 0.89444 0.88597 0.91047 0.89925 0.89321 0.90619 0.89872 0.89327 0.94441 0.96558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.98 10.31 55.49 0.57 -27.41 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.22 -6.53 10.28 -15.06 -0.15 -6.68 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 N -0.61 -16.20 3.39 -170.06 -0.58 -16.78 16 10 C 0.18 4.44 5.38 -3.06 -0.02 4.42 16 11 C -0.14 -2.60 6.42 -24.89 -0.16 -2.76 16 12 C -0.10 -1.77 3.07 -88.46 -0.27 -2.04 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 14 C -0.11 -1.52 4.85 -26.73 -0.13 -1.65 16 15 C 0.12 1.67 5.52 -4.05 -0.02 1.65 16 16 N -0.74 -8.49 5.56 -60.30 -0.33 -8.82 16 17 C 0.51 6.99 7.82 -10.98 -0.09 6.90 16 18 O -0.52 -9.78 15.57 5.56 0.09 -9.69 16 19 C -0.05 -0.52 6.27 -29.03 -0.18 -0.70 16 20 C 0.02 0.21 5.87 -82.72 -0.49 -0.27 16 21 C -0.05 -0.50 11.53 -16.76 -0.19 -0.69 16 22 N -0.46 -4.24 3.13 -113.76 -0.36 -4.60 16 23 C 0.21 2.36 7.65 -155.24 -1.19 1.17 16 24 N -0.46 -6.69 10.62 -6.88 -0.07 -6.76 16 25 C -0.03 -0.26 6.33 -27.51 -0.17 -0.43 16 26 C -0.13 -0.61 5.96 -26.45 -0.16 -0.77 16 27 C -0.13 -0.49 5.94 -26.52 -0.16 -0.64 16 28 C 0.10 0.52 6.98 -3.92 -0.03 0.49 16 29 C 0.14 3.01 5.89 -2.52 -0.01 3.00 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.04 1.10 7.53 -51.93 -0.39 0.71 16 32 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.07 1.12 7.45 -51.93 -0.39 0.73 16 39 H 0.40 3.18 8.47 -40.82 -0.35 2.83 16 40 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 47 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 48 H 0.08 0.29 8.12 -51.93 -0.42 -0.13 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 51 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 52 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 LS Contribution 411.82 15.07 6.21 6.21 Total: -1.00 -39.00 411.82 -12.08 -51.08 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -9.06 Total: -1.63 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.52 Total: 0.56 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: -0.77 Total: -64.38 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -39.00 -12.08 -51.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714863152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.171 kcal (2) G-P(sol) polarization free energy of solvation -39.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds