Wall clock time and date at job start Sat Apr 11 2020 08:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00456 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00511 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00070 * 3 2 1 7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00368 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99845 * 359.72042 * 7 2 1 10 10 C 1.47023 * 125.64945 * 359.69059 * 9 7 2 11 11 C 1.54333 * 107.26879 * 178.84833 * 10 9 7 12 12 C 1.55156 * 103.01719 * 338.14792 * 11 10 9 13 13 H 1.09001 * 111.00470 * 277.22613 * 12 11 10 14 14 C 1.53007 * 111.03634 * 153.39453 * 12 11 10 15 15 C 1.52999 * 109.47237 * 181.33036 * 14 12 11 16 16 N 1.46492 * 109.47375 * 180.02562 * 15 14 12 17 17 C 1.34778 * 120.00195 * 180.02562 * 16 15 14 18 18 O 1.21272 * 119.99868 * 359.97438 * 17 16 15 19 19 C 1.50704 * 119.99651 * 179.97438 * 17 16 15 20 20 C 1.50704 * 109.46556 * 179.97438 * 19 17 16 21 21 C 1.34855 * 125.96262 * 124.71536 * 20 19 17 22 22 N 1.36313 * 106.69060 * 179.88565 * 21 20 19 23 23 C 1.35425 * 107.39593 * 0.40329 * 22 21 20 24 24 N 1.30089 * 108.62800 * 359.71747 * 23 22 21 25 25 C 1.51040 * 123.98079 * 179.67527 * 23 22 21 26 26 C 1.53394 * 108.21647 * 344.08460 * 25 23 22 27 27 C 1.53156 * 109.24503 * 48.79634 * 26 25 23 28 28 C 1.46466 * 127.77717 * 180.22437 * 22 21 20 29 29 C 1.47419 * 125.64885 * 180.02562 * 9 7 2 30 30 H 0.97000 * 119.99517 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.88481 * 298.40177 * 10 9 7 32 32 H 1.09001 * 109.87735 * 59.56334 * 10 9 7 33 33 H 1.08995 * 110.85471 * 219.68094 * 11 10 9 34 34 H 1.08998 * 110.66098 * 96.52457 * 11 10 9 35 35 H 1.08998 * 109.46746 * 301.32660 * 14 12 11 36 36 H 1.08997 * 109.46979 * 61.32718 * 14 12 11 37 37 H 1.09008 * 109.46544 * 299.99820 * 15 14 12 38 38 H 1.08995 * 109.47233 * 59.99180 * 15 14 12 39 39 H 0.97005 * 120.00182 * 359.97438 * 16 15 14 40 40 H 1.08998 * 109.47069 * 299.99603 * 19 17 16 41 41 H 1.08998 * 109.47533 * 60.00149 * 19 17 16 42 42 H 1.08006 * 126.65527 * 0.02562 * 21 20 19 43 43 H 1.09000 * 109.71662 * 103.74785 * 25 23 22 44 44 H 1.09000 * 109.71585 * 224.38789 * 25 23 22 45 45 H 1.08990 * 109.50187 * 288.87084 * 26 25 23 46 46 H 1.09000 * 109.55218 * 168.75214 * 26 25 23 47 47 H 1.09003 * 109.46568 * 170.50903 * 27 26 25 48 48 H 1.09007 * 109.46686 * 50.52900 * 27 26 25 49 49 H 1.09003 * 109.58781 * 282.88220 * 28 22 21 50 50 H 1.09003 * 109.58546 * 43.15877 * 28 22 21 51 51 H 1.09000 * 110.36612 * 322.93177 * 29 9 7 52 52 H 1.08999 * 110.37105 * 85.25388 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 0.0047 10 6 -0.1375 -2.5327 0.0176 11 6 -0.4488 -4.0441 -0.0103 12 6 0.8488 -4.6573 -0.5999 13 1 0.8486 -4.5996 -1.6884 14 6 1.0366 -6.1013 -0.1303 15 6 2.3405 -6.6589 -0.7045 16 7 2.5200 -8.0417 -0.2554 17 6 3.6073 -8.7393 -0.6396 18 8 4.4369 -8.2224 -1.3575 19 6 3.7922 -10.1616 -0.1770 20 6 5.0765 -10.7109 -0.7428 21 6 6.0886 -11.2489 -0.0324 22 7 7.0450 -11.6174 -0.9310 23 6 6.5923 -11.2851 -2.1633 24 7 5.4152 -10.7447 -2.0418 25 6 7.3651 -11.5227 -3.4391 26 6 8.8275 -11.8008 -3.0691 27 6 8.8757 -12.8551 -1.9592 28 6 8.3362 -12.2524 -0.6575 29 6 1.9333 -3.7311 0.0054 30 1 -0.4849 0.8401 0.0004 31 1 -0.5464 -2.0847 0.9232 32 1 -0.5653 -2.0518 -0.8621 33 1 -1.3018 -4.2527 -0.6558 34 1 -0.6288 -4.4184 0.9975 35 1 1.0791 -6.1265 0.9586 36 1 0.1990 -6.7074 -0.4754 37 1 2.2980 -6.6336 -1.7935 38 1 3.1780 -6.0527 -0.3595 39 1 1.8567 -8.4551 0.3192 40 1 3.8343 -10.1869 0.9119 41 1 2.9548 -10.7679 -0.5224 42 1 6.1320 -11.3672 1.0403 43 1 6.9497 -12.3816 -3.9662 44 1 7.3080 -10.6383 -4.0737 45 1 9.2953 -10.8811 -2.7180 46 1 9.3616 -12.1696 -3.9448 47 1 9.9058 -13.1789 -1.8102 48 1 8.2637 -13.7109 -2.2443 49 1 9.0375 -11.5074 -0.2816 50 1 8.2063 -13.0393 0.0855 51 1 2.8302 -3.7420 -0.6140 52 1 2.1707 -4.0397 1.0235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714863152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:08 Heat of formation + Delta-G solvation = 6.036959 kcal Electronic energy + Delta-G solvation = -29348.893987 eV Core-core repulsion = 25348.027651 eV Total energy + Delta-G solvation = -4000.866336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.22698 -40.54722 -39.37756 -37.53691 -36.35041 -34.71181 -34.13968 -33.06109 -32.19930 -30.71290 -29.82406 -28.71712 -27.72342 -26.42561 -24.84452 -23.66097 -23.13137 -22.13602 -21.74642 -21.15013 -20.56077 -19.93353 -18.86840 -18.01767 -17.67018 -16.99157 -16.80144 -16.70711 -16.59714 -16.25239 -15.59164 -15.51042 -15.11071 -15.09074 -14.94592 -14.62344 -14.48387 -14.37644 -14.08233 -13.86173 -13.69596 -13.48367 -13.22534 -13.16103 -12.97718 -12.81578 -12.66316 -12.62379 -12.19704 -12.06298 -11.98637 -11.95177 -11.86978 -11.80511 -11.53293 -11.39343 -11.31678 -10.87930 -10.72410 -10.67084 -10.37957 -9.98352 -9.11459 -8.89449 -7.86447 -5.21651 1.12110 1.42757 1.44324 1.54906 1.81806 1.93077 2.04695 2.47810 2.51507 3.31035 3.37244 3.62708 3.67718 3.73264 3.79908 3.80515 3.97775 4.00710 4.15145 4.19616 4.24130 4.35242 4.38246 4.39136 4.42057 4.48617 4.55275 4.63214 4.67448 4.71240 4.77863 4.83163 4.83902 4.92186 4.96216 4.98641 5.01550 5.09775 5.14864 5.18966 5.26600 5.27951 5.43695 5.44541 5.53060 5.56710 5.71046 5.79240 5.85352 6.20292 6.34677 6.73563 7.10381 7.28338 7.45929 7.78116 8.42579 9.24023 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.001640 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.169692 B =17066.276676 C =18080.876959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.631 5.631 10 C 0.180 3.820 11 C -0.121 4.121 12 C -0.087 4.087 13 H 0.068 0.932 14 C -0.096 4.096 15 C 0.126 3.874 16 N -0.718 5.718 17 C 0.506 3.494 18 O -0.580 6.580 19 C -0.044 4.044 20 C -0.023 4.023 21 C -0.044 4.044 22 N -0.457 5.457 23 C 0.185 3.815 24 N -0.515 5.515 25 C -0.036 4.036 26 C -0.121 4.121 27 C -0.129 4.129 28 C 0.094 3.906 29 C 0.134 3.866 30 H 0.247 0.753 31 H 0.005 0.995 32 H 0.007 0.993 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.418 0.582 40 H 0.142 0.858 41 H 0.120 0.880 42 H 0.208 0.792 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.116 0.884 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.112 0.888 51 H 0.028 0.972 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.053 -35.381 1.296 38.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.055 3.945 11 C -0.159 4.159 12 C -0.107 4.107 13 H 0.086 0.914 14 C -0.134 4.134 15 C 0.001 3.999 16 N -0.372 5.372 17 C 0.293 3.707 18 O -0.459 6.459 19 C -0.084 4.084 20 C -0.153 4.153 21 C -0.178 4.178 22 N -0.140 5.140 23 C -0.078 4.078 24 N -0.234 5.234 25 C -0.075 4.075 26 C -0.159 4.159 27 C -0.166 4.166 28 C -0.026 4.026 29 C 0.009 3.991 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.256 0.744 40 H 0.160 0.840 41 H 0.138 0.862 42 H 0.225 0.775 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.122 0.878 47 H 0.134 0.866 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.130 0.870 51 H 0.046 0.954 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 14.288 -34.596 0.197 37.431 hybrid contribution 0.311 1.414 0.717 1.616 sum 14.599 -33.182 0.915 36.263 Atomic orbital electron populations 1.70209 1.06220 1.25159 1.58407 1.25678 0.96724 1.01047 1.02707 0.84993 0.78037 0.79347 0.76873 1.19264 1.21761 1.21546 1.19503 0.90898 0.84087 1.42862 0.90497 1.44858 1.02762 1.01202 1.86948 1.20955 0.83496 0.92592 0.97412 1.22758 0.97274 0.94461 1.01423 1.22166 0.94991 0.93997 0.99535 0.91367 1.21570 0.96438 0.93660 1.01726 1.21169 0.98042 0.82084 0.98560 1.45876 1.24649 1.13749 1.52924 1.21213 0.80705 0.89190 0.79605 1.90721 1.44737 1.72084 1.38337 1.19956 0.94937 0.90321 1.03189 1.20473 0.98569 1.06691 0.89536 1.22753 0.90144 1.07453 0.97496 1.45588 1.16509 1.45341 1.06526 1.23779 0.92776 1.02047 0.89204 1.69867 1.13451 1.19086 1.20955 1.20304 0.94196 1.03300 0.89695 1.21675 0.94049 0.99613 1.00564 1.21911 1.03963 0.98267 0.92461 1.22331 0.81145 0.98543 1.00629 1.21809 0.95278 0.84831 0.97135 0.94390 0.97692 0.97436 0.89943 0.90329 0.89776 0.88452 0.93447 0.93791 0.74410 0.84047 0.86192 0.77511 0.88516 0.90329 0.92090 0.87848 0.86561 0.90562 0.89231 0.86970 0.95406 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 10.31 21.65 0.22 -59.34 16 2 C -0.07 -4.12 5.49 84.86 0.47 -3.65 16 3 Si 0.98 48.01 29.55 68.60 2.03 50.04 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 7 C -0.24 -14.60 10.28 84.03 0.86 -13.74 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.63 -34.51 3.39 -691.95 -2.35 -36.86 16 10 C 0.18 9.28 5.38 86.73 0.47 9.75 16 11 C -0.12 -4.34 6.42 31.79 0.20 -4.14 16 12 C -0.09 -2.93 3.07 -9.39 -0.03 -2.96 16 13 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.10 -2.24 4.85 30.60 0.15 -2.09 16 15 C 0.13 3.38 5.52 86.38 0.48 3.86 16 16 N -0.72 -15.18 5.56 -463.08 -2.57 -17.76 16 17 C 0.51 13.51 7.82 87.66 0.69 14.19 16 18 O -0.58 -22.67 15.57 -3.00 -0.05 -22.72 16 19 C -0.04 -0.78 6.27 29.10 0.18 -0.59 16 20 C -0.02 -0.57 5.87 41.41 0.24 -0.32 16 21 C -0.04 -0.80 11.53 83.22 0.96 0.16 16 22 N -0.46 -7.93 3.13 -513.82 -1.61 -9.54 16 23 C 0.19 4.31 7.65 138.23 1.06 5.37 16 24 N -0.51 -15.56 10.62 -175.68 -1.87 -17.42 16 25 C -0.04 -0.57 6.33 30.09 0.19 -0.38 16 26 C -0.12 -1.04 5.96 30.78 0.18 -0.85 16 27 C -0.13 -0.62 5.94 30.73 0.18 -0.44 16 28 C 0.09 0.72 6.98 86.47 0.60 1.32 16 29 C 0.13 5.81 5.89 86.86 0.51 6.32 16 30 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.00 0.28 7.53 -2.39 -0.02 0.26 16 32 H 0.01 0.43 7.36 -2.39 -0.02 0.41 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.08 2.49 8.04 -2.39 -0.02 2.47 16 35 H 0.08 1.77 8.10 -2.39 -0.02 1.75 16 36 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.04 1.42 7.45 -2.39 -0.02 1.40 16 39 H 0.42 5.19 8.47 -92.70 -0.79 4.40 16 40 H 0.14 1.29 8.11 -2.39 -0.02 1.27 16 41 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 46 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 48 H 0.08 0.40 8.12 -2.38 -0.02 0.38 16 49 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.11 0.34 8.14 -2.39 -0.02 0.33 16 51 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 52 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 Total: -1.00 -92.11 411.82 1.32 -90.79 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.12 Total: 11.00 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 7.40 Total: 11.80 kcal Atomic # 7 Polarization: -132.74 SS G_CDS: -8.17 Total: -140.91 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 2.03 Total: 50.04 kcal Total: -92.11 1.32 -90.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714863152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.824 kcal (2) G-P(sol) polarization free energy of solvation -92.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds