Wall clock time and date at job start Sat Apr 11 2020 08:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99642 * 2 1 4 4 H 1.48496 * 109.47341 * 240.00102 * 3 2 1 5 5 H 1.48502 * 109.46949 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47029 * 119.99597 * 3 2 1 7 7 C 1.38803 * 120.00598 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00307 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.47425 * 125.64353 * 359.97438 * 9 7 2 11 11 C 1.54904 * 104.83074 * 155.90575 * 10 9 7 12 12 C 1.55163 * 101.58371 * 37.00549 * 11 10 9 13 13 H 1.08999 * 110.71674 * 83.03819 * 12 11 10 14 14 C 1.53001 * 110.71975 * 206.13377 * 12 11 10 15 15 C 1.53002 * 109.46948 * 182.55496 * 14 12 11 16 16 N 1.46497 * 109.46832 * 180.02562 * 15 14 12 17 17 C 1.34780 * 119.99955 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99508 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00073 * 180.02562 * 17 16 15 20 20 C 1.50699 * 109.47130 * 180.02562 * 19 17 16 21 21 C 1.34856 * 125.96593 * 124.99510 * 20 19 17 22 22 N 1.36129 * 106.75094 * 180.02562 * 21 20 19 23 23 C 1.35614 * 107.39230 * 359.90326 * 22 21 20 24 24 N 1.30088 * 108.57644 * 0.07689 * 23 22 21 25 25 C 1.51047 * 124.03478 * 179.97438 * 23 22 21 26 26 C 1.53402 * 108.20877 * 344.17272 * 25 23 22 27 27 C 1.53147 * 109.23731 * 48.82599 * 26 25 23 28 28 C 1.46471 * 127.92795 * 180.27756 * 22 21 20 29 29 C 1.47311 * 125.61747 * 180.19493 * 9 7 2 30 30 H 0.96996 * 120.00335 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.37181 * 37.06352 * 10 9 7 32 32 H 1.09003 * 110.45473 * 274.78601 * 10 9 7 33 33 H 1.08995 * 111.00556 * 278.93307 * 11 10 9 34 34 H 1.08999 * 111.03920 * 155.09108 * 11 10 9 35 35 H 1.09004 * 109.46911 * 62.55744 * 14 12 11 36 36 H 1.08995 * 109.47306 * 302.55796 * 14 12 11 37 37 H 1.09002 * 109.46595 * 60.00339 * 15 14 12 38 38 H 1.08995 * 109.47362 * 300.00266 * 15 14 12 39 39 H 0.97004 * 120.00648 * 0.02562 * 16 15 14 40 40 H 1.08993 * 109.47411 * 60.00117 * 19 17 16 41 41 H 1.08995 * 109.47170 * 299.99882 * 19 17 16 42 42 H 1.08000 * 126.65676 * 359.97370 * 21 20 19 43 43 H 1.09002 * 109.71556 * 224.50068 * 25 23 22 44 44 H 1.08994 * 109.71493 * 103.85252 * 25 23 22 45 45 H 1.08995 * 109.51343 * 288.89481 * 26 25 23 46 46 H 1.09008 * 109.54501 * 168.76970 * 26 25 23 47 47 H 1.08999 * 109.46855 * 170.50397 * 27 26 25 48 48 H 1.08999 * 109.47018 * 50.51497 * 27 26 25 49 49 H 1.09002 * 109.58349 * 42.78990 * 28 22 21 50 50 H 1.09005 * 109.58201 * 282.51621 * 28 22 21 51 51 H 1.09003 * 110.06434 * 61.68204 * 29 9 7 52 52 H 1.09006 * 109.85237 * 300.42342 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1413 -2.5332 0.0005 11 6 -0.4013 -3.9325 -0.6108 12 6 0.7788 -4.7524 -0.0254 13 1 0.5450 -5.1002 0.9808 14 6 1.1236 -5.9317 -0.9372 15 6 2.2459 -6.7557 -0.3029 16 7 2.5764 -7.8845 -1.1763 17 6 3.5431 -8.7528 -0.8185 18 8 4.1389 -8.6000 0.2267 19 6 3.8835 -9.9136 -1.7172 20 6 4.9879 -10.7261 -1.0918 21 6 4.9481 -12.0486 -0.8310 22 7 6.1446 -12.3739 -0.2691 23 6 6.8840 -11.2389 -0.2044 24 7 6.1842 -10.2597 -0.6980 25 6 8.2838 -11.1729 0.3592 26 6 8.5344 -12.4501 1.1711 27 6 8.1217 -13.6669 0.3377 28 6 6.5967 -13.6902 0.1872 29 6 1.9340 -3.7297 0.0051 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5992 -1.7592 -0.6153 32 1 -0.5288 -2.4859 1.0183 33 1 -0.3517 -3.8988 -1.6991 34 1 -1.3586 -4.3334 -0.2776 35 1 1.4513 -5.5573 -1.9071 36 1 0.2420 -6.5590 -1.0689 37 1 1.9181 -7.1300 0.6669 38 1 3.1274 -6.1284 -0.1712 39 1 2.0995 -8.0070 -2.0121 40 1 4.2120 -9.5387 -2.6864 41 1 3.0021 -10.5409 -1.8501 42 1 4.1258 -12.7203 -1.0286 43 1 8.3788 -10.3011 1.0066 44 1 9.0053 -11.1073 -0.4552 45 1 7.9457 -12.4201 2.0879 46 1 9.5932 -12.5218 1.4204 47 1 8.4514 -14.5779 0.8371 48 1 8.5831 -13.6056 -0.6479 49 1 6.3132 -14.4475 -0.5437 50 1 6.1381 -13.9209 1.1488 51 1 2.5278 -3.8680 0.9087 52 1 2.5627 -3.8541 -0.8766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714863177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:12 Heat of formation + Delta-G solvation = 33.571044 kcal Electronic energy + Delta-G solvation = -29343.871165 eV Core-core repulsion = 25344.198797 eV Total energy + Delta-G solvation = -3999.672368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.53327 -39.46391 -37.72152 -37.01093 -35.00807 -33.52930 -32.96671 -32.09568 -30.65592 -29.28831 -28.88337 -27.77669 -26.25718 -24.67472 -24.17117 -22.61955 -22.27041 -21.09946 -20.07999 -19.98793 -19.41934 -19.11415 -17.26334 -16.88337 -16.79715 -16.12856 -15.73198 -15.68521 -15.17788 -14.71727 -14.60974 -14.54511 -14.44355 -14.05863 -13.96190 -13.65656 -13.61934 -13.30788 -12.77507 -12.44705 -12.41186 -12.15856 -12.09909 -11.73791 -11.66326 -11.58546 -11.52881 -11.49628 -11.46841 -10.97114 -10.82982 -10.67722 -10.09961 -10.03319 -9.98212 -9.87912 -9.70415 -9.67778 -9.59410 -9.36379 -8.89210 -8.56453 -8.37988 -6.73340 -5.56775 -2.97739 1.82243 2.49325 2.82673 2.89202 3.44035 3.46669 3.50179 3.51930 3.91453 4.04680 4.12212 4.19957 4.56833 4.57720 4.72817 4.77783 4.82092 4.89175 4.97323 5.07221 5.13907 5.17239 5.21695 5.22448 5.32346 5.37540 5.41189 5.49180 5.56456 5.64569 5.69416 5.71894 5.75271 5.90055 6.02104 6.11336 6.11833 6.30936 6.34566 6.47973 6.55352 6.59864 6.69354 6.73648 6.87403 6.98310 7.08232 7.61184 7.63135 7.71651 7.94234 8.03436 8.41745 8.45413 9.31404 9.92339 10.58268 11.47113 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.001621 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.231139 B =17272.336803 C =18358.258089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.098 4.098 13 H 0.071 0.929 14 C -0.115 4.115 15 C 0.120 3.880 16 N -0.735 5.735 17 C 0.511 3.489 18 O -0.520 6.520 19 C -0.053 4.053 20 C 0.017 3.983 21 C -0.050 4.050 22 N -0.459 5.459 23 C 0.206 3.794 24 N -0.457 5.457 25 C -0.034 4.034 26 C -0.126 4.126 27 C -0.134 4.134 28 C 0.104 3.896 29 C 0.139 3.861 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.010 0.990 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.397 0.603 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.173 0.827 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.020 0.980 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.621 -33.543 -3.618 35.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.027 3.973 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.089 0.911 14 C -0.153 4.153 15 C -0.004 4.004 16 N -0.388 5.388 17 C 0.296 3.704 18 O -0.394 6.394 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.183 4.183 22 N -0.142 5.142 23 C -0.057 4.057 24 N -0.174 5.174 25 C -0.073 4.073 26 C -0.164 4.164 27 C -0.172 4.172 28 C -0.018 4.018 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.231 0.769 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.190 0.810 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.101 0.899 51 H 0.038 0.962 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 11.316 -32.528 -2.846 34.558 hybrid contribution -0.228 -0.141 -0.250 0.366 sum 11.088 -32.669 -3.095 34.638 Atomic orbital electron populations 1.69797 1.04848 1.24709 1.57973 1.24777 0.95733 0.97654 1.02726 0.86154 0.78376 0.83116 0.77884 1.21217 1.21615 1.21268 1.19065 0.90512 0.82602 1.42615 0.90605 1.44591 1.01969 0.99807 1.86797 1.21907 0.84692 0.92658 0.98077 1.23034 0.95850 0.98873 0.99941 1.22094 0.97459 0.93862 0.98316 0.91072 1.21780 0.97185 0.96647 0.99722 1.21436 0.98704 0.86844 0.93377 1.46074 1.39134 1.28595 1.24981 1.20424 0.79425 0.83369 0.87155 1.90742 1.50149 1.73975 1.24557 1.19859 0.96045 0.94770 0.98741 1.19929 0.94523 0.90798 1.06056 1.22120 0.90794 0.97754 1.07677 1.45296 1.13116 1.09279 1.46556 1.23329 0.96708 0.81242 1.04418 1.69952 1.03929 1.28861 1.14670 1.20180 0.88080 0.99363 0.99628 1.21681 1.02730 0.93354 0.98637 1.21893 0.93370 0.99945 1.02002 1.21943 0.96274 0.82662 1.00968 1.21422 0.93689 0.85828 0.97726 0.93811 0.87727 0.97233 0.92224 0.92565 0.91228 0.91757 0.91843 0.91154 0.76927 0.87943 0.88019 0.81003 0.88575 0.89394 0.91081 0.89918 0.89326 0.90596 0.89371 0.89909 0.96225 0.95854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.70 10.09 55.49 0.56 -27.14 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.50 16 3 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.39 10.28 -15.06 -0.15 -6.54 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.61 -16.25 3.40 -169.84 -0.58 -16.82 16 10 C 0.15 3.81 5.89 -2.53 -0.01 3.79 16 11 C -0.14 -2.65 6.54 -24.58 -0.16 -2.81 16 12 C -0.10 -1.73 2.95 -88.78 -0.26 -1.99 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.12 -1.57 4.72 -26.73 -0.13 -1.69 16 15 C 0.12 1.69 5.54 -4.04 -0.02 1.66 16 16 N -0.74 -8.63 5.56 -60.30 -0.33 -8.97 16 17 C 0.51 7.05 7.82 -10.99 -0.09 6.96 16 18 O -0.52 -9.81 15.57 5.56 0.09 -9.72 16 19 C -0.05 -0.53 6.27 -29.04 -0.18 -0.71 16 20 C 0.02 0.21 5.87 -82.71 -0.49 -0.27 16 21 C -0.05 -0.49 11.52 -16.84 -0.19 -0.68 16 22 N -0.46 -4.22 3.14 -113.76 -0.36 -4.57 16 23 C 0.21 2.37 7.65 -155.06 -1.19 1.19 16 24 N -0.46 -6.78 10.62 -6.84 -0.07 -6.85 16 25 C -0.03 -0.26 6.33 -27.51 -0.17 -0.44 16 26 C -0.13 -0.61 5.96 -26.45 -0.16 -0.77 16 27 C -0.13 -0.48 5.94 -26.52 -0.16 -0.64 16 28 C 0.10 0.51 6.98 -3.92 -0.03 0.48 16 29 C 0.14 3.06 6.13 -2.91 -0.02 3.04 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.11 2.93 5.87 -51.93 -0.31 2.63 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 1.12 8.05 -51.93 -0.42 0.70 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.16 7.58 -51.93 -0.39 0.77 16 39 H 0.40 3.30 8.47 -40.82 -0.35 2.95 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 42 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 46 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 47 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 48 H 0.08 0.29 8.12 -51.93 -0.42 -0.13 16 49 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 411.21 15.07 6.20 6.20 Total: -1.00 -38.67 411.21 -12.04 -50.70 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -9.01 Total: -0.68 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -3.50 Total: 0.07 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.78 Total: -64.35 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -38.67 -12.04 -50.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714863177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.272 kcal (2) G-P(sol) polarization free energy of solvation -38.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds