Wall clock time and date at job start Sat Apr 11 2020 08:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48498 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47182 * 299.99152 * 3 2 1 6 6 H 1.48493 * 109.47562 * 59.99713 * 3 2 1 7 7 C 1.38805 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99722 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46864 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46826 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.52244 * 305.07480 * 12 11 10 14 14 C 1.53038 * 109.49958 * 65.16283 * 12 11 10 15 15 C 1.53034 * 109.53909 * 181.31703 * 14 12 11 16 16 C 1.53629 * 109.24204 * 298.50718 * 15 14 12 17 17 N 1.46932 * 108.54081 * 54.85559 * 16 15 14 18 18 C 1.34772 * 120.63101 * 126.36928 * 17 16 15 19 19 O 1.21283 * 120.00310 * 185.14783 * 18 17 16 20 20 C 1.50702 * 119.99800 * 5.14070 * 18 17 16 21 21 H 1.09000 * 109.46945 * 25.31666 * 20 18 17 22 22 C 1.53159 * 109.46093 * 145.30082 * 20 18 17 23 23 C 1.53396 * 109.23287 * 189.49854 * 22 20 18 24 24 C 1.51038 * 108.21444 * 311.17549 * 23 22 20 25 25 N 1.30096 * 127.39479 * 195.98415 * 24 23 22 26 26 C 1.34291 * 109.20989 * 179.88151 * 25 24 23 27 27 C 1.34853 * 108.07554 * 0.03728 * 26 25 24 28 28 N 1.35428 * 123.97858 * 15.93000 * 24 23 22 29 29 C 1.46471 * 124.82299 * 0.17320 * 28 24 23 30 30 C 1.46929 * 118.73991 * 306.09792 * 17 16 15 31 31 H 0.97004 * 120.00061 * 0.02562 * 1 2 3 32 32 H 0.96992 * 119.99953 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.47384 * 59.99571 * 10 9 7 34 34 H 1.09007 * 109.47087 * 299.99808 * 10 9 7 35 35 H 1.09003 * 109.47043 * 60.00023 * 11 10 9 36 36 H 1.08996 * 109.46827 * 299.99788 * 11 10 9 37 37 H 1.09000 * 109.45542 * 301.33707 * 14 12 11 38 38 H 1.09005 * 109.45825 * 61.30433 * 14 12 11 39 39 H 1.09001 * 109.49816 * 58.58056 * 15 14 12 40 40 H 1.09003 * 109.49769 * 178.65302 * 15 14 12 41 41 H 1.08993 * 109.74066 * 295.12410 * 16 15 14 42 42 H 1.09000 * 109.66576 * 174.54545 * 16 15 14 43 43 H 1.09000 * 109.50970 * 309.42316 * 22 20 18 44 44 H 1.08993 * 109.51169 * 69.52061 * 22 20 18 45 45 H 1.09004 * 109.71654 * 70.86062 * 23 22 20 46 46 H 1.09005 * 109.71509 * 191.45492 * 23 22 20 47 47 H 1.08005 * 125.96229 * 180.02562 * 26 25 24 48 48 H 1.07995 * 126.65545 * 179.97438 * 27 26 25 49 49 H 1.08999 * 109.58045 * 136.88205 * 29 28 24 50 50 H 1.08999 * 109.58287 * 257.15494 * 29 28 24 51 51 H 1.08994 * 109.58787 * 173.64707 * 30 17 16 52 52 H 1.09004 * 109.58375 * 293.93089 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8288 -6.1447 0.0005 13 1 2.5216 -6.1649 -0.8407 14 6 2.6100 -6.2842 1.3091 15 6 3.4014 -7.5939 1.2956 16 6 2.4246 -8.7747 1.1879 17 7 1.5745 -8.5716 0.0069 18 6 1.4674 -9.5295 -0.9351 19 8 0.8382 -9.3149 -1.9495 20 6 2.1298 -10.8672 -0.7281 21 1 2.2460 -11.0537 0.3395 22 6 1.2624 -11.9673 -1.3469 23 6 1.8120 -13.3379 -0.9315 24 6 3.3012 -13.3454 -1.1834 25 7 4.0876 -14.3802 -1.2408 26 6 5.3421 -13.9687 -1.4862 27 6 5.3298 -12.6237 -1.5837 28 7 4.0393 -12.2291 -1.3914 29 6 3.5077 -10.8643 -1.3991 30 6 0.8385 -7.3068 -0.1247 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7145 0.8904 34 1 2.6847 -3.7145 -0.8895 35 1 0.4367 -4.7621 -0.8886 36 1 0.4375 -4.7617 0.8914 37 1 3.2980 -5.4452 1.4125 38 1 1.9145 -6.2890 2.1485 39 1 4.0794 -7.6005 0.4422 40 1 3.9762 -7.6812 2.2177 41 1 1.8029 -8.8209 2.0820 42 1 2.9834 -9.7044 1.0803 43 1 0.2365 -11.8642 -0.9933 44 1 1.2835 -11.8798 -2.4331 45 1 1.6173 -13.5065 0.1276 46 1 1.3347 -14.1199 -1.5221 47 1 6.2096 -14.6040 -1.5877 48 1 6.1780 -11.9834 -1.7760 49 1 4.1808 -10.2070 -0.8485 50 1 3.4150 -10.5141 -2.4271 51 1 0.3504 -7.2676 -1.0985 52 1 0.0884 -7.2369 0.6631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715143138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:18 Heat of formation + Delta-G solvation = 24.842626 kcal Electronic energy + Delta-G solvation = -30473.276944 eV Core-core repulsion = 26473.226083 eV Total energy + Delta-G solvation = -4000.050861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.73185 -40.76495 -38.32560 -36.55808 -35.47585 -33.70494 -33.58067 -32.15059 -31.14374 -30.37680 -28.91561 -27.66394 -26.03501 -24.96565 -24.18784 -23.03228 -22.47305 -21.76237 -21.44141 -20.17355 -19.73876 -18.95658 -17.82604 -17.47675 -17.03374 -16.32030 -16.04219 -15.63540 -15.00146 -14.90550 -14.73541 -14.61357 -14.51633 -14.42128 -14.19318 -14.05788 -13.69370 -13.45196 -13.31810 -13.21745 -13.06392 -12.91782 -12.49372 -12.25540 -12.15456 -11.75961 -11.57211 -11.44939 -11.32845 -11.12149 -11.02225 -10.82496 -10.66000 -10.55330 -10.32829 -10.25768 -10.13220 -9.98970 -9.96291 -9.71439 -8.94943 -8.85902 -8.70209 -6.92955 -5.78136 -3.06819 1.67484 1.99425 2.36518 2.61567 2.80857 3.41583 3.46928 3.49382 3.78827 3.84422 3.89644 4.00504 4.31561 4.45259 4.50633 4.57658 4.61574 4.62742 4.68621 4.74149 4.82769 4.84041 4.98785 5.02853 5.09691 5.10291 5.24898 5.28584 5.36143 5.46593 5.48228 5.49639 5.53424 5.60930 5.64152 5.65635 5.80885 5.88986 5.91889 6.01934 6.09479 6.16417 6.26977 6.37354 6.40320 6.41126 6.75694 6.82474 6.87143 7.00698 7.68299 7.74498 7.75802 8.41021 9.51910 10.10702 10.44903 11.44873 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.001803 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.823568 B =15525.869662 C =15960.930008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.120 4.120 12 C -0.094 4.094 13 H 0.073 0.927 14 C -0.119 4.119 15 C -0.134 4.134 16 C 0.102 3.898 17 N -0.606 5.606 18 C 0.523 3.477 19 O -0.529 6.529 20 C -0.123 4.123 21 H 0.105 0.895 22 C -0.108 4.108 23 C -0.033 4.033 24 C 0.206 3.794 25 N -0.489 5.489 26 C -0.031 4.031 27 C -0.053 4.053 28 N -0.455 5.455 29 C 0.117 3.883 30 C 0.114 3.886 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.020 0.980 34 H 0.015 0.985 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.101 0.899 47 H 0.171 0.829 48 H 0.176 0.824 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.118 -28.917 1.993 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.158 4.158 12 C -0.114 4.114 13 H 0.092 0.908 14 C -0.156 4.156 15 C -0.172 4.172 16 C -0.021 4.021 17 N -0.339 5.339 18 C 0.309 3.691 19 O -0.405 6.405 20 C -0.145 4.145 21 H 0.123 0.877 22 C -0.146 4.146 23 C -0.072 4.072 24 C -0.056 4.056 25 N -0.208 5.208 26 C -0.179 4.179 27 C -0.185 4.185 28 N -0.138 5.138 29 C -0.006 4.006 30 C -0.007 4.007 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.038 0.962 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.119 0.881 47 H 0.188 0.812 48 H 0.193 0.807 49 H 0.114 0.886 50 H 0.113 0.887 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.646 -29.336 1.543 30.119 hybrid contribution 0.710 1.958 -0.014 2.083 sum 7.356 -27.378 1.530 28.391 Atomic orbital electron populations 1.69675 1.05106 1.25528 1.57898 1.24757 0.95553 0.97737 1.03104 0.86113 0.78747 0.84106 0.77210 1.20583 1.21841 1.21853 1.19276 0.91037 0.84221 1.42479 0.91192 1.42386 1.05908 1.00102 1.89468 1.20659 0.93497 0.85501 0.97622 1.21705 0.98797 0.92971 1.02366 1.21442 0.97308 0.94238 0.98397 0.90813 1.21665 0.99397 0.97002 0.97565 1.22012 0.97742 0.94889 1.02604 1.21979 0.93024 0.99028 0.88083 1.48180 1.46699 1.16833 1.22166 1.20100 0.81083 0.84877 0.83055 1.90748 1.42114 1.80587 1.27043 1.21683 0.95069 0.94781 1.02925 0.87690 1.21568 0.99371 0.91229 1.02433 1.20224 0.85330 0.98268 1.03347 1.23361 0.96040 0.81181 1.05041 1.70076 1.01888 1.28887 1.19910 1.22381 0.95484 0.92427 1.07586 1.22604 0.86952 0.97485 1.11497 1.45316 1.07901 1.07494 1.53086 1.21787 0.94112 0.81330 1.03338 1.21803 0.93956 0.81228 1.03735 0.93563 0.78322 0.96244 0.96678 0.91663 0.91706 0.90444 0.91568 0.91531 0.90539 0.90752 0.90135 0.89316 0.89819 0.89042 0.88100 0.81226 0.80726 0.88592 0.88715 0.88754 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.67 5.60 -59.90 -0.34 -19.01 16 10 C 0.15 3.02 6.02 -4.04 -0.02 3.00 16 11 C -0.12 -1.81 4.80 -26.73 -0.13 -1.94 16 12 C -0.09 -1.09 2.34 -90.50 -0.21 -1.30 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.12 -1.18 4.95 -26.69 -0.13 -1.31 16 15 C -0.13 -0.95 6.10 -26.39 -0.16 -1.11 16 16 C 0.10 0.63 6.18 -3.48 -0.02 0.61 16 17 N -0.61 -5.34 2.97 -172.49 -0.51 -5.85 16 18 C 0.52 4.99 6.66 -10.99 -0.07 4.92 16 19 O -0.53 -7.14 15.86 5.55 0.09 -7.05 16 20 C -0.12 -0.81 1.74 -91.56 -0.16 -0.97 16 21 H 0.11 0.53 6.15 -51.93 -0.32 0.21 16 22 C -0.11 -0.71 4.78 -26.44 -0.13 -0.84 16 23 C -0.03 -0.21 6.33 -27.51 -0.17 -0.38 16 24 C 0.21 1.91 7.65 -155.23 -1.19 0.72 16 25 N -0.49 -5.47 11.24 -10.62 -0.12 -5.59 16 26 C -0.03 -0.28 11.87 -17.68 -0.21 -0.49 16 27 C -0.05 -0.41 11.64 -16.76 -0.20 -0.60 16 28 N -0.45 -3.67 3.13 -113.76 -0.36 -4.03 16 29 C 0.12 0.77 6.21 -3.92 -0.02 0.74 16 30 C 0.11 1.22 5.72 -3.71 -0.02 1.20 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.38 10.23 7.67 -40.82 -0.31 9.92 16 33 H 0.02 0.38 6.54 -51.93 -0.34 0.04 16 34 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.88 6.51 -51.93 -0.34 0.54 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.35 5.34 -51.93 -0.28 0.07 16 43 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16 48 H 0.18 0.84 8.06 -52.49 -0.42 0.41 16 49 H 0.10 0.48 7.91 -51.93 -0.41 0.07 16 50 H 0.09 0.70 8.12 -51.93 -0.42 0.28 16 51 H 0.09 1.18 7.00 -51.93 -0.36 0.81 16 52 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 404.50 15.07 6.10 6.10 Total: -1.00 -35.21 404.50 -11.20 -46.41 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.67 Total: 4.44 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -3.10 Total: -5.19 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.60 Total: -62.11 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: 0.09 Total: -7.05 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.21 -11.20 -46.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715143138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.253 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds