Wall clock time and date at job start Sat Apr 11 2020 08:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48498 * 109.46929 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47182 * 299.99152 * 3 2 1 6 6 H 1.48493 * 109.47562 * 59.99713 * 3 2 1 7 7 C 1.38805 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00010 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99996 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99722 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46864 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46826 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.52244 * 305.07480 * 12 11 10 14 14 C 1.53038 * 109.49958 * 65.16283 * 12 11 10 15 15 C 1.53034 * 109.53909 * 181.31703 * 14 12 11 16 16 C 1.53629 * 109.24204 * 298.50718 * 15 14 12 17 17 N 1.46932 * 108.54081 * 54.85559 * 16 15 14 18 18 C 1.34772 * 120.63101 * 126.36928 * 17 16 15 19 19 O 1.21283 * 120.00310 * 185.14783 * 18 17 16 20 20 C 1.50702 * 119.99800 * 5.14070 * 18 17 16 21 21 H 1.09000 * 109.46945 * 25.31666 * 20 18 17 22 22 C 1.53159 * 109.46093 * 145.30082 * 20 18 17 23 23 C 1.53396 * 109.23287 * 189.49854 * 22 20 18 24 24 C 1.51038 * 108.21444 * 311.17549 * 23 22 20 25 25 N 1.30096 * 127.39479 * 195.98415 * 24 23 22 26 26 C 1.34291 * 109.20989 * 179.88151 * 25 24 23 27 27 C 1.34853 * 108.07554 * 0.03728 * 26 25 24 28 28 N 1.35428 * 123.97858 * 15.93000 * 24 23 22 29 29 C 1.46471 * 124.82299 * 0.17320 * 28 24 23 30 30 C 1.46929 * 118.73991 * 306.09792 * 17 16 15 31 31 H 0.97004 * 120.00061 * 0.02562 * 1 2 3 32 32 H 0.96992 * 119.99953 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.47384 * 59.99571 * 10 9 7 34 34 H 1.09007 * 109.47087 * 299.99808 * 10 9 7 35 35 H 1.09003 * 109.47043 * 60.00023 * 11 10 9 36 36 H 1.08996 * 109.46827 * 299.99788 * 11 10 9 37 37 H 1.09000 * 109.45542 * 301.33707 * 14 12 11 38 38 H 1.09005 * 109.45825 * 61.30433 * 14 12 11 39 39 H 1.09001 * 109.49816 * 58.58056 * 15 14 12 40 40 H 1.09003 * 109.49769 * 178.65302 * 15 14 12 41 41 H 1.08993 * 109.74066 * 295.12410 * 16 15 14 42 42 H 1.09000 * 109.66576 * 174.54545 * 16 15 14 43 43 H 1.09000 * 109.50970 * 309.42316 * 22 20 18 44 44 H 1.08993 * 109.51169 * 69.52061 * 22 20 18 45 45 H 1.09004 * 109.71654 * 70.86062 * 23 22 20 46 46 H 1.09005 * 109.71509 * 191.45492 * 23 22 20 47 47 H 1.08005 * 125.96229 * 180.02562 * 26 25 24 48 48 H 1.07995 * 126.65545 * 179.97438 * 27 26 25 49 49 H 1.08999 * 109.58045 * 136.88205 * 29 28 24 50 50 H 1.08999 * 109.58287 * 257.15494 * 29 28 24 51 51 H 1.08994 * 109.58787 * 173.64707 * 30 17 16 52 52 H 1.09004 * 109.58375 * 293.93089 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 6 1.8288 -6.1447 0.0005 13 1 2.5216 -6.1649 -0.8407 14 6 2.6100 -6.2842 1.3091 15 6 3.4014 -7.5939 1.2956 16 6 2.4246 -8.7747 1.1879 17 7 1.5745 -8.5716 0.0069 18 6 1.4674 -9.5295 -0.9351 19 8 0.8382 -9.3149 -1.9495 20 6 2.1298 -10.8672 -0.7281 21 1 2.2460 -11.0537 0.3395 22 6 1.2624 -11.9673 -1.3469 23 6 1.8120 -13.3379 -0.9315 24 6 3.3012 -13.3454 -1.1834 25 7 4.0876 -14.3802 -1.2408 26 6 5.3421 -13.9687 -1.4862 27 6 5.3298 -12.6237 -1.5837 28 7 4.0393 -12.2291 -1.3914 29 6 3.5077 -10.8643 -1.3991 30 6 0.8385 -7.3068 -0.1247 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 2.6847 -3.7145 0.8904 34 1 2.6847 -3.7145 -0.8895 35 1 0.4367 -4.7621 -0.8886 36 1 0.4375 -4.7617 0.8914 37 1 3.2980 -5.4452 1.4125 38 1 1.9145 -6.2890 2.1485 39 1 4.0794 -7.6005 0.4422 40 1 3.9762 -7.6812 2.2177 41 1 1.8029 -8.8209 2.0820 42 1 2.9834 -9.7044 1.0803 43 1 0.2365 -11.8642 -0.9933 44 1 1.2835 -11.8798 -2.4331 45 1 1.6173 -13.5065 0.1276 46 1 1.3347 -14.1199 -1.5221 47 1 6.2096 -14.6040 -1.5877 48 1 6.1780 -11.9834 -1.7760 49 1 4.1808 -10.2070 -0.8485 50 1 3.4150 -10.5141 -2.4271 51 1 0.3504 -7.2676 -1.0985 52 1 0.0884 -7.2369 0.6631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715143138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:05:17 Heat of formation + Delta-G solvation = 3.659560 kcal Electronic energy + Delta-G solvation = -30474.195510 eV Core-core repulsion = 26473.226083 eV Total energy + Delta-G solvation = -4000.969427 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.32970 -41.50893 -39.18986 -37.21635 -36.96254 -35.03812 -34.24896 -33.20417 -32.49694 -31.24120 -29.53302 -29.04175 -26.74261 -25.99548 -25.37864 -23.98336 -23.36207 -22.73410 -22.33309 -21.20451 -20.39410 -19.59429 -19.14758 -18.43790 -18.06139 -17.05477 -16.80757 -16.62178 -16.29025 -15.96760 -15.65005 -15.49821 -15.21500 -15.19037 -15.13538 -14.96580 -14.77784 -14.65303 -14.23398 -14.20925 -14.05828 -13.73794 -13.34602 -13.03758 -12.94065 -12.89206 -12.81769 -12.50404 -12.42349 -12.21765 -12.10904 -12.04089 -11.97733 -11.80688 -11.67812 -11.55880 -11.27451 -10.99281 -10.93679 -10.83198 -10.60280 -9.69536 -9.29551 -9.01552 -7.97553 -5.26829 1.08581 1.30963 1.45887 1.47000 1.57090 1.71089 1.97172 2.16425 2.54308 3.21917 3.28131 3.36144 3.37528 3.49714 3.68191 3.73190 3.86504 3.94821 3.96975 4.06676 4.09983 4.14713 4.25794 4.31390 4.35038 4.39833 4.48404 4.54115 4.56881 4.59062 4.64645 4.72378 4.77040 4.82130 4.85122 4.88026 4.88268 4.95762 5.01695 5.10862 5.14619 5.23941 5.32033 5.33098 5.44060 5.44824 5.48295 5.52813 5.83806 6.17981 6.25316 6.31533 7.01972 7.13803 7.30892 8.07755 8.30197 9.26288 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024646 B = 0.001803 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.823568 B =15525.869662 C =15960.930008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.076 0.924 9 N -0.750 5.750 10 C 0.154 3.846 11 C -0.108 4.108 12 C -0.082 4.082 13 H 0.063 0.937 14 C -0.118 4.118 15 C -0.128 4.128 16 C 0.099 3.901 17 N -0.603 5.603 18 C 0.523 3.477 19 O -0.575 6.575 20 C -0.112 4.112 21 H 0.131 0.869 22 C -0.103 4.103 23 C -0.027 4.027 24 C 0.192 3.808 25 N -0.527 5.527 26 C -0.056 4.056 27 C -0.047 4.047 28 N -0.455 5.455 29 C 0.119 3.881 30 C 0.120 3.880 31 H 0.252 0.748 32 H 0.373 0.627 33 H 0.029 0.971 34 H 0.010 0.990 35 H 0.051 0.949 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.184 0.816 48 H 0.204 0.796 49 H 0.119 0.881 50 H 0.083 0.917 51 H 0.071 0.929 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.879 -29.911 3.550 31.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.392 5.392 10 C 0.028 3.972 11 C -0.147 4.147 12 C -0.102 4.102 13 H 0.082 0.918 14 C -0.156 4.156 15 C -0.166 4.166 16 C -0.022 4.022 17 N -0.334 5.334 18 C 0.311 3.689 19 O -0.454 6.454 20 C -0.133 4.133 21 H 0.149 0.851 22 C -0.141 4.141 23 C -0.066 4.066 24 C -0.070 4.070 25 N -0.247 5.247 26 C -0.203 4.203 27 C -0.180 4.180 28 N -0.138 5.138 29 C -0.004 4.004 30 C -0.003 4.003 31 H 0.060 0.940 32 H 0.204 0.796 33 H 0.047 0.953 34 H 0.028 0.972 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.082 0.918 45 H 0.128 0.872 46 H 0.121 0.879 47 H 0.201 0.799 48 H 0.221 0.779 49 H 0.137 0.863 50 H 0.101 0.899 51 H 0.089 0.911 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.460 -30.365 3.125 31.676 hybrid contribution 0.190 2.229 -0.524 2.298 sum 8.650 -28.136 2.601 29.550 Atomic orbital electron populations 1.69831 1.06656 1.26062 1.59535 1.25621 0.96476 1.01273 1.03686 0.85043 0.78225 0.79584 0.76731 1.18947 1.22071 1.21804 1.19688 0.91525 0.85434 1.41167 0.90637 1.42650 1.05698 1.01474 1.89421 1.20829 0.94162 0.84736 0.97486 1.21565 0.97945 0.93367 1.01796 1.21284 0.97036 0.92542 0.99344 0.91807 1.21641 0.99246 0.98383 0.96295 1.21984 0.97595 0.93280 1.03776 1.22231 0.92872 0.99774 0.87334 1.48240 1.46531 1.15778 1.22885 1.20560 0.80389 0.85711 0.82235 1.90736 1.44235 1.81487 1.28992 1.21627 0.94673 0.92620 1.04392 0.85146 1.21501 0.99843 0.91521 1.01258 1.20280 0.83803 0.97975 1.04500 1.23804 0.96982 0.81283 1.04970 1.70037 1.03060 1.30267 1.21287 1.22773 0.95516 0.93575 1.08449 1.23074 0.87516 0.97444 1.10003 1.45418 1.08000 1.07701 1.52721 1.21842 0.94480 0.80937 1.03132 1.21570 0.93932 0.81945 1.02864 0.93969 0.79550 0.95271 0.97173 0.92975 0.91563 0.92006 0.91079 0.91610 0.88303 0.89207 0.87454 0.88728 0.91782 0.87190 0.87908 0.79894 0.77917 0.86281 0.89895 0.91082 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -38.63 5.60 -343.44 -1.92 -40.56 16 10 C 0.15 6.03 6.02 86.38 0.52 6.55 16 11 C -0.11 -3.29 4.80 30.60 0.15 -3.14 16 12 C -0.08 -1.84 2.34 -10.71 -0.03 -1.86 16 13 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 14 C -0.12 -2.09 4.95 30.62 0.15 -1.94 16 15 C -0.13 -1.36 6.10 30.82 0.19 -1.17 16 16 C 0.10 0.83 6.18 86.51 0.53 1.36 16 17 N -0.60 -9.30 2.97 -818.04 -2.43 -11.72 16 18 C 0.52 9.21 6.66 87.66 0.58 9.79 16 19 O -0.58 -15.59 15.86 -3.04 -0.05 -15.64 16 20 C -0.11 -1.20 1.74 -11.40 -0.02 -1.22 16 21 H 0.13 0.76 6.15 -2.39 -0.01 0.75 16 22 C -0.10 -1.22 4.78 30.78 0.15 -1.08 16 23 C -0.03 -0.30 6.33 30.09 0.19 -0.11 16 24 C 0.19 3.29 7.65 138.23 1.06 4.35 16 25 N -0.53 -11.37 11.24 -187.50 -2.11 -13.48 16 26 C -0.06 -0.97 11.87 83.54 0.99 0.02 16 27 C -0.05 -0.63 11.64 83.22 0.97 0.34 16 28 N -0.46 -6.42 3.13 -513.83 -1.61 -8.04 16 29 C 0.12 1.27 6.21 86.47 0.54 1.81 16 30 C 0.12 2.44 5.72 86.36 0.49 2.93 16 31 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 32 H 0.37 20.42 7.67 -92.71 -0.71 19.71 16 33 H 0.03 1.11 6.54 -2.39 -0.02 1.09 16 34 H 0.01 0.41 8.14 -2.38 -0.02 0.40 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.06 1.30 6.51 -2.39 -0.02 1.28 16 38 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.11 0.38 5.34 -2.39 -0.01 0.36 16 43 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 44 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 45 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.10 1.10 8.14 -2.38 -0.02 1.09 16 47 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 48 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 49 H 0.12 0.74 7.91 -2.39 -0.02 0.72 16 50 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 51 H 0.07 1.81 7.00 -2.39 -0.02 1.79 16 52 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -77.94 404.50 2.17 -75.77 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.20 Total: 25.56 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 7.77 Total: -0.53 kcal Atomic # 7 Polarization: -125.61 SS G_CDS: -7.79 Total: -133.40 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.05 Total: -15.64 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -77.94 2.17 -75.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715143138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.426 kcal (2) G-P(sol) polarization free energy of solvation -77.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds