Wall clock time and date at job start Sat Apr 11 2020 08:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48501 * 109.46653 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46850 * 299.99748 * 3 2 1 6 6 H 1.48498 * 109.47063 * 59.99929 * 3 2 1 7 7 C 1.38814 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99874 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00196 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47170 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47194 * 54.99530 * 11 10 9 13 13 C 1.53006 * 109.47127 * 294.99688 * 11 10 9 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46817 * 60.00361 * 14 13 11 16 16 C 1.52996 * 109.46972 * 299.99733 * 15 14 13 17 17 C 1.52997 * 109.47131 * 60.00459 * 16 15 14 18 18 H 1.08993 * 109.47194 * 60.00154 * 17 16 15 19 19 N 1.46506 * 109.46949 * 180.02562 * 17 16 15 20 20 C 1.34783 * 119.99811 * 274.99482 * 19 17 16 21 21 O 1.21627 * 119.99804 * 0.02562 * 20 19 17 22 22 C 1.47316 * 119.99937 * 180.02562 * 20 19 17 23 23 C 1.36579 * 126.21217 * 180.02562 * 22 20 19 24 24 N 1.34863 * 106.78624 * 179.97438 * 23 22 20 25 25 C 1.36307 * 107.86806 * 0.04540 * 24 23 22 26 26 N 1.29803 * 108.91559 * 359.65996 * 25 24 23 27 27 C 1.51090 * 123.90617 * 179.90054 * 25 24 23 28 28 C 1.53389 * 108.19180 * 344.03445 * 27 25 24 29 29 C 1.53141 * 109.25005 * 48.96536 * 28 27 25 30 30 C 1.46583 * 127.49506 * 180.08154 * 24 23 22 31 31 H 0.97000 * 119.99990 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00154 * 359.97438 * 9 7 2 33 33 H 1.09006 * 109.46866 * 59.99662 * 10 9 7 34 34 H 1.09000 * 109.46967 * 300.00182 * 10 9 7 35 35 H 1.09001 * 109.46801 * 300.00272 * 13 11 10 36 36 H 1.09001 * 109.46998 * 59.99868 * 13 11 10 37 37 H 1.09002 * 109.47153 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.46952 * 300.00302 * 14 13 11 39 39 H 1.08996 * 109.47407 * 60.00219 * 15 14 13 40 40 H 1.09000 * 109.46986 * 179.97438 * 15 14 13 41 41 H 1.09001 * 109.46993 * 180.02562 * 16 15 14 42 42 H 1.09000 * 109.47380 * 299.99696 * 16 15 14 43 43 H 0.97000 * 120.00279 * 94.99983 * 19 17 16 44 44 H 1.08002 * 126.60087 * 359.97438 * 23 22 20 45 45 H 1.09002 * 109.72255 * 103.70693 * 27 25 24 46 46 H 1.09001 * 109.72299 * 224.31893 * 27 25 24 47 47 H 1.09005 * 109.51127 * 168.89640 * 28 27 25 48 48 H 1.08998 * 109.50865 * 288.98484 * 28 27 25 49 49 H 1.09007 * 109.45824 * 50.21660 * 29 28 27 50 50 H 1.08994 * 109.46098 * 170.19604 * 29 28 27 51 51 H 1.08998 * 109.58575 * 282.60419 * 30 24 23 52 52 H 1.08995 * 109.58865 * 43.02630 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0016 11 6 1.0639 -4.8197 -0.0022 12 1 0.3800 -4.7126 -0.8442 13 6 0.2686 -4.8115 1.3049 14 6 -0.7252 -5.9748 1.3045 15 6 0.0362 -7.2960 1.1791 16 6 0.8314 -7.3041 -0.1279 17 6 1.8252 -6.1409 -0.1276 18 1 2.5091 -6.2475 0.7144 19 7 2.5863 -6.1484 -1.3794 20 6 3.6863 -6.9187 -1.4948 21 8 4.0468 -7.6079 -0.5597 22 6 4.4518 -6.9258 -2.7533 23 6 5.5787 -7.6543 -3.0082 24 7 5.9513 -7.3660 -4.2718 25 6 5.0576 -6.4694 -4.7772 26 7 4.1615 -6.2136 -3.8736 27 6 5.1353 -5.8977 -6.1736 28 6 6.5410 -6.1685 -6.7244 29 6 6.8948 -7.6420 -6.5029 30 6 7.1023 -7.8993 -5.0064 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6841 -3.7149 0.8889 34 1 2.6855 -3.7142 -0.8911 35 1 0.9525 -4.9186 2.1469 36 1 -0.2734 -3.8701 1.3945 37 1 -1.2921 -5.9687 2.2355 38 1 -1.4090 -5.8682 0.4625 39 1 0.7200 -7.4026 2.0212 40 1 -0.6717 -8.1248 1.1793 41 1 1.3736 -8.2455 -0.2175 42 1 0.1476 -7.1976 -0.9700 43 1 2.2986 -5.5990 -2.1253 44 1 6.0756 -8.3308 -2.3286 45 1 4.3921 -6.3784 -6.8098 46 1 4.9527 -4.8235 -6.1419 47 1 6.5633 -5.9453 -7.7911 48 1 7.2630 -5.5381 -6.2055 49 1 6.0830 -8.2696 -6.8705 50 1 7.8113 -7.8804 -7.0426 51 1 8.0121 -7.4008 -4.6720 52 1 7.1843 -8.9716 -4.8286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716514121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:33 Heat of formation + Delta-G solvation = -16.704182 kcal Electronic energy + Delta-G solvation = -30793.330174 eV Core-core repulsion = 26791.477709 eV Total energy + Delta-G solvation = -4001.852466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.41997 -41.05046 -39.26077 -37.36650 -36.43723 -35.20002 -34.35704 -33.69494 -31.38246 -31.23430 -30.09494 -29.58067 -27.02381 -25.70064 -24.74062 -24.30957 -23.15735 -22.71776 -21.99498 -21.29804 -20.61078 -19.98691 -19.30276 -18.52518 -17.39099 -17.24366 -17.00257 -16.73607 -15.96563 -15.91031 -15.52224 -15.34563 -15.23016 -15.12342 -15.03546 -14.80504 -14.77403 -14.62064 -14.51312 -14.14097 -14.02523 -13.65189 -13.33467 -12.97493 -12.79753 -12.75433 -12.67348 -12.21520 -12.10333 -12.08737 -11.99317 -11.93946 -11.91476 -11.87287 -11.56978 -11.37678 -11.26199 -11.15645 -11.00804 -10.86499 -10.70485 -10.02678 -9.45897 -9.00248 -7.96067 -5.24673 0.54840 1.35521 1.45021 1.46217 1.56503 1.64660 2.28581 2.51341 2.54434 3.15803 3.36595 3.52716 3.57777 3.63767 3.77435 3.80637 3.92758 3.99483 4.08054 4.10215 4.25378 4.33524 4.36950 4.41049 4.43762 4.44405 4.49156 4.50061 4.52783 4.57159 4.83473 4.85052 4.88527 4.91543 4.96706 5.04499 5.07698 5.10902 5.14328 5.16288 5.25307 5.29021 5.30170 5.30839 5.43298 5.44446 5.46587 5.51376 5.61579 6.06043 6.26221 6.49883 6.86744 7.23554 7.32807 8.06790 8.33751 9.27416 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008036 B = 0.003092 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.283643 B = 9053.718638 C =11887.612275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.738 5.738 10 C 0.163 3.837 11 C -0.084 4.084 12 H 0.073 0.927 13 C -0.103 4.103 14 C -0.113 4.113 15 C -0.108 4.108 16 C -0.117 4.117 17 C 0.161 3.839 18 H 0.071 0.929 19 N -0.705 5.705 20 C 0.601 3.399 21 O -0.580 6.580 22 C -0.102 4.102 23 C 0.045 3.955 24 N -0.447 5.447 25 C 0.207 3.793 26 N -0.494 5.494 27 C -0.037 4.037 28 C -0.122 4.122 29 C -0.130 4.130 30 C 0.090 3.910 31 H 0.252 0.748 32 H 0.377 0.623 33 H 0.006 0.994 34 H 0.013 0.987 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.408 0.592 44 H 0.206 0.794 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.120 0.880 51 H 0.102 0.898 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.746 -22.256 -14.376 29.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.381 5.381 10 C 0.036 3.964 11 C -0.104 4.104 12 H 0.091 0.909 13 C -0.142 4.142 14 C -0.151 4.151 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.057 3.943 18 H 0.089 0.911 19 N -0.353 5.353 20 C 0.389 3.611 21 O -0.461 6.461 22 C -0.230 4.230 23 C -0.096 4.096 24 N -0.128 5.128 25 C -0.058 4.058 26 N -0.214 5.214 27 C -0.076 4.076 28 C -0.160 4.160 29 C -0.167 4.167 30 C -0.030 4.030 31 H 0.061 0.939 32 H 0.210 0.790 33 H 0.024 0.976 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.244 0.756 44 H 0.223 0.777 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.124 0.876 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.138 0.862 51 H 0.120 0.880 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.602 -22.165 -13.858 29.020 hybrid contribution 0.434 1.072 0.176 1.170 sum 13.037 -21.093 -13.682 28.321 Atomic orbital electron populations 1.69817 1.06419 1.26049 1.59340 1.25529 0.96457 1.00883 1.03519 0.85086 0.77993 0.79829 0.76924 1.19584 1.21599 1.21709 1.19597 0.91198 0.85579 1.41489 0.91548 1.42490 1.05593 1.00752 1.89241 1.20708 0.93662 0.85288 0.96764 1.21419 0.96755 0.92469 0.99730 0.90859 1.21436 0.97965 0.99078 0.95687 1.21544 0.97344 0.93504 1.02696 1.21468 0.98901 0.97797 0.96456 1.21827 0.97373 0.96988 0.99416 1.20915 0.92589 0.94736 0.86094 0.91131 1.45907 1.27031 1.45339 1.17044 1.17169 0.79659 0.78820 0.85420 1.90722 1.70412 1.44509 1.40464 1.20590 1.00946 1.06377 0.95111 1.22676 0.97247 1.02151 0.87563 1.45627 1.23391 1.32958 1.10839 1.24213 0.88200 0.94702 0.98711 1.70339 1.26602 1.24043 1.00419 1.20468 1.00389 1.01638 0.85094 1.21702 0.94179 0.96606 1.03476 1.21944 1.05142 0.96998 0.92622 1.22568 0.85763 1.01646 0.93029 0.93873 0.79035 0.97586 0.96926 0.92399 0.92925 0.90537 0.91596 0.91897 0.89680 0.92156 0.91229 0.75636 0.77721 0.87981 0.89057 0.87554 0.91402 0.90546 0.86170 0.87988 0.86818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.16 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 47.88 29.55 68.60 2.03 49.90 16 4 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.25 -14.64 9.99 84.03 0.84 -13.80 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 9 N -0.74 -39.88 5.33 -343.45 -1.83 -41.71 16 10 C 0.16 7.31 5.56 86.38 0.48 7.79 16 11 C -0.08 -3.01 1.80 -10.79 -0.02 -3.03 16 12 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.10 -3.45 5.08 30.60 0.16 -3.30 16 14 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 15 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 16 C -0.12 -3.17 5.49 30.59 0.17 -3.00 16 17 C 0.16 5.24 1.90 44.99 0.09 5.32 16 18 H 0.07 2.54 7.58 -2.39 -0.02 2.52 16 19 N -0.70 -23.73 4.30 -445.89 -1.92 -25.65 16 20 C 0.60 21.03 7.78 86.63 0.67 21.70 16 21 O -0.58 -22.33 16.54 -4.12 -0.07 -22.40 16 22 C -0.10 -3.17 6.98 40.52 0.28 -2.89 16 23 C 0.05 1.06 11.32 83.84 0.95 2.00 16 24 N -0.45 -8.03 3.11 -512.72 -1.60 -9.63 16 25 C 0.21 4.63 7.64 138.05 1.05 5.68 16 26 N -0.49 -15.08 11.00 -176.09 -1.94 -17.01 16 27 C -0.04 -0.52 6.33 30.10 0.19 -0.33 16 28 C -0.12 -0.81 5.95 30.77 0.18 -0.63 16 29 C -0.13 -0.49 5.93 30.73 0.18 -0.31 16 30 C 0.09 0.65 6.96 86.45 0.60 1.25 16 31 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.38 21.18 6.85 -92.71 -0.63 20.54 16 33 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.01 0.60 7.30 -2.39 -0.02 0.58 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 2.04 7.18 -2.39 -0.02 2.02 16 37 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.41 13.95 8.11 -92.71 -0.75 13.20 16 44 H 0.21 3.80 8.06 -2.91 -0.02 3.78 16 45 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.11 0.29 8.14 -2.38 -0.02 0.27 16 48 H 0.07 0.54 8.12 -2.39 -0.02 0.52 16 49 H 0.08 0.36 8.11 -2.38 -0.02 0.34 16 50 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 51 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 52 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -78.95 409.87 1.15 -77.80 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: -0.47 Total: 41.23 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.66 Total: 7.62 kcal Atomic # 7 Polarization: -147.16 SS G_CDS: -7.00 Total: -154.16 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.07 Total: -22.40 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -78.95 1.15 -77.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716514121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.097 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds