Wall clock time and date at job start Sat Apr 11 2020 08:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86811 * 119.99764 * 2 1 4 4 H 1.48501 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47064 * 300.00462 * 3 2 1 6 6 H 1.48500 * 109.46664 * 60.00244 * 3 2 1 7 7 C 1.38811 * 120.00576 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00068 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99791 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99997 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46737 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.47575 * 55.00554 * 11 10 9 13 13 C 1.52996 * 109.47577 * 294.99984 * 11 10 9 14 14 C 1.52997 * 109.47165 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47592 * 60.00300 * 14 13 11 16 16 C 1.53006 * 109.46626 * 300.00035 * 15 14 13 17 17 C 1.52997 * 109.47164 * 59.99702 * 16 15 14 18 18 H 1.09000 * 109.47140 * 60.00051 * 17 16 15 19 19 N 1.46496 * 109.47079 * 179.97438 * 17 16 15 20 20 C 1.34776 * 120.00539 * 274.99997 * 19 17 16 21 21 O 1.21574 * 119.99922 * 0.02562 * 20 19 17 22 22 C 1.47706 * 120.00187 * 179.97438 * 20 19 17 23 23 N 1.32213 * 126.68013 * 359.69707 * 22 20 19 24 24 N 1.28842 * 110.15244 * 179.86063 * 23 22 20 25 25 H 0.97001 * 124.97911 * 180.11338 * 24 23 22 26 26 C 1.34318 * 110.04071 * 0.33198 * 24 23 22 27 27 C 1.35583 * 107.21656 * 359.87263 * 26 24 23 28 28 C 1.50381 * 124.61924 * 179.78708 * 27 26 24 29 29 C 1.53470 * 108.28405 * 343.81061 * 28 27 26 30 30 C 1.53107 * 109.51350 * 49.47207 * 29 28 27 31 31 C 1.50710 * 128.90011 * 179.97438 * 26 24 23 32 32 H 0.96994 * 120.00409 * 359.97438 * 1 2 3 33 33 H 0.97003 * 119.99761 * 0.02562 * 9 7 2 34 34 H 1.08998 * 109.46601 * 60.00072 * 10 9 7 35 35 H 1.08991 * 109.47119 * 300.00122 * 10 9 7 36 36 H 1.09000 * 109.47054 * 300.00355 * 13 11 10 37 37 H 1.09001 * 109.46997 * 60.00088 * 13 11 10 38 38 H 1.09000 * 109.47140 * 299.99954 * 14 13 11 39 39 H 1.09002 * 109.47045 * 180.02562 * 14 13 11 40 40 H 1.08993 * 109.47839 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47160 * 59.99666 * 15 14 13 42 42 H 1.09001 * 109.46998 * 179.97438 * 16 15 14 43 43 H 1.09000 * 109.47050 * 299.99699 * 16 15 14 44 44 H 0.97008 * 119.99554 * 95.00236 * 19 17 16 45 45 H 1.08996 * 109.69989 * 103.51179 * 28 27 26 46 46 H 1.09000 * 109.70104 * 224.11330 * 28 27 26 47 47 H 1.09006 * 109.46454 * 289.45515 * 29 28 27 48 48 H 1.09008 * 109.46092 * 169.48379 * 29 28 27 49 49 H 1.09000 * 109.44535 * 169.88682 * 30 29 28 50 50 H 1.09000 * 109.41509 * 49.96797 * 30 29 28 51 51 H 1.09002 * 109.69022 * 282.96932 * 31 26 24 52 52 H 1.08994 * 109.69675 * 43.55198 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3258 -2.3880 -0.0016 10 6 2.0584 -3.6567 -0.0027 11 6 1.0642 -4.8196 -0.0031 12 1 0.3797 -4.7123 -0.8446 13 6 0.2698 -4.8121 1.3045 14 6 -0.7239 -5.9754 1.3042 15 6 0.0373 -7.2965 1.1777 16 6 0.8317 -7.3041 -0.1300 17 6 1.8254 -6.1408 -0.1298 18 1 2.5099 -6.2478 0.7117 19 7 2.5864 -6.1484 -1.3815 20 6 3.6863 -6.9186 -1.4970 21 8 4.0468 -7.6075 -0.5624 22 6 4.4532 -6.9266 -2.7593 23 7 4.1787 -6.2388 -3.8546 24 7 5.0583 -6.4825 -4.7639 25 1 5.0639 -6.0909 -5.6513 26 6 5.9636 -7.3621 -4.3047 27 6 5.6130 -7.6712 -3.0320 28 6 6.3619 -8.6305 -2.1485 29 6 7.2931 -9.4719 -3.0319 30 6 8.0957 -8.5492 -3.9531 31 6 7.1652 -7.9382 -5.0087 32 1 -0.4850 0.8400 0.0004 33 1 0.3557 -2.3880 -0.0023 34 1 2.6850 -3.7151 0.8872 35 1 2.6850 -3.7136 -0.8927 36 1 0.9543 -4.9195 2.1460 37 1 -0.2722 -3.8707 1.3949 38 1 -1.4084 -5.8684 0.4627 39 1 -1.2901 -5.9697 2.2356 40 1 -0.6706 -8.1253 1.1771 41 1 0.7218 -7.4035 2.0192 42 1 1.3744 -8.2451 -0.2200 43 1 0.1472 -7.1971 -0.9715 44 1 2.2986 -5.5989 -2.1274 45 1 6.9507 -8.0747 -1.4188 46 1 5.6567 -9.2822 -1.6328 47 1 6.6991 -10.1594 -3.6342 48 1 7.9770 -10.0397 -2.4010 49 1 8.8789 -9.1231 -4.4486 50 1 8.5480 -7.7522 -3.3630 51 1 6.8456 -8.7108 -5.7081 52 1 7.6890 -7.1486 -5.5472 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716516691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:40 Heat of formation + Delta-G solvation = 12.335422 kcal Electronic energy + Delta-G solvation = -31010.825414 eV Core-core repulsion = 27010.232200 eV Total energy + Delta-G solvation = -4000.593214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97842 -39.82638 -37.96681 -37.17507 -34.55979 -33.99342 -32.80246 -31.83176 -30.16748 -30.09557 -29.55465 -28.87309 -25.27907 -24.25314 -23.98663 -22.94285 -22.45027 -21.65809 -20.55794 -20.15787 -19.43806 -19.17785 -17.98229 -17.28900 -16.69735 -16.17433 -15.93896 -14.99514 -14.80448 -14.53845 -14.44961 -14.18916 -14.02991 -13.96875 -13.79229 -13.57914 -13.36916 -13.23680 -13.18468 -12.95668 -12.57735 -12.35890 -12.32321 -11.76294 -11.46576 -11.24755 -11.13522 -11.02957 -10.96483 -10.85804 -10.83925 -10.80482 -10.65877 -10.34859 -10.16111 -10.04924 -9.89860 -9.75403 -9.58285 -9.45287 -8.85753 -8.79885 -8.70819 -6.85937 -5.72628 -3.00190 1.52569 1.94423 2.64401 3.31291 3.45462 3.50103 3.51364 3.53530 4.22908 4.32992 4.52622 4.57097 4.61563 4.88345 4.90149 4.98620 5.00618 5.08372 5.14822 5.22317 5.27191 5.32679 5.35735 5.44508 5.58701 5.62687 5.65552 5.67684 5.71618 5.75285 5.80108 5.82669 5.85322 5.96765 6.07697 6.10161 6.18782 6.23066 6.27735 6.32415 6.35421 6.37299 6.47161 6.63632 6.66071 6.76637 6.82466 6.88618 6.99379 7.56933 7.75306 7.84561 8.36536 8.46785 9.58012 10.16557 10.51715 11.50472 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009404 B = 0.002961 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2976.664713 B = 9454.650245 C =11732.971414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.099 4.099 12 H 0.075 0.925 13 C -0.106 4.106 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.126 4.126 17 C 0.155 3.845 18 H 0.089 0.911 19 N -0.706 5.706 20 C 0.604 3.396 21 O -0.535 6.535 22 C -0.003 4.003 23 N -0.257 5.257 24 N -0.374 5.374 25 H 0.444 0.556 26 C 0.005 3.995 27 C -0.143 4.143 28 C -0.042 4.042 29 C -0.121 4.121 30 C -0.115 4.115 31 C -0.047 4.047 32 H 0.254 0.746 33 H 0.384 0.616 34 H 0.018 0.982 35 H 0.020 0.980 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.408 0.592 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.591 -21.849 -9.410 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.030 3.970 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.165 4.165 17 C 0.050 3.950 18 H 0.107 0.893 19 N -0.356 5.356 20 C 0.388 3.612 21 O -0.410 6.410 22 C -0.163 4.163 23 N -0.093 5.093 24 N -0.086 5.086 25 H 0.289 0.711 26 C -0.122 4.122 27 C -0.153 4.153 28 C -0.080 4.080 29 C -0.158 4.158 30 C -0.153 4.153 31 C -0.085 4.085 32 H 0.063 0.937 33 H 0.218 0.782 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.243 0.757 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.203 -21.461 -9.111 25.450 hybrid contribution 0.479 1.138 -0.735 1.437 sum 10.683 -20.324 -9.846 24.982 Atomic orbital electron populations 1.69662 1.05038 1.25407 1.58234 1.24712 0.95507 0.97572 1.03303 0.86141 0.78816 0.84285 0.77140 1.20627 1.21956 1.21900 1.19275 0.91030 0.84226 1.42011 0.91304 1.42369 1.05804 0.99908 1.89402 1.20671 0.93047 0.85296 0.97945 1.21585 0.97719 0.93387 0.99186 0.90700 1.21491 0.97654 0.98811 0.96500 1.21599 0.98084 0.94588 1.01630 1.21483 0.98732 0.97602 0.97394 1.21900 0.97853 0.98463 0.98255 1.21039 0.92665 0.94921 0.86377 0.89293 1.45963 1.26899 1.45343 1.17387 1.16832 0.79759 0.79794 0.84785 1.90760 1.69081 1.42480 1.38677 1.21663 0.98886 1.01489 0.94288 1.73899 1.14912 1.22216 0.98288 1.42981 1.18574 1.32834 1.14230 0.71135 1.21158 0.96819 0.98142 0.96039 1.19874 0.97466 1.03213 0.94776 1.19980 0.96958 0.95413 0.95685 1.21672 0.98260 0.97799 0.98116 1.21570 0.97340 0.99527 0.96876 1.20221 0.91042 0.99757 0.97522 0.93654 0.78236 0.96391 0.96237 0.92018 0.90244 0.92054 0.92125 0.92211 0.91859 0.91747 0.91916 0.75689 0.90558 0.89774 0.91778 0.91184 0.90944 0.91213 0.89983 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.84 29.55 -169.99 -5.02 17.82 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.23 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.69 5.33 -59.91 -0.32 -19.01 16 10 C 0.16 3.29 5.56 -4.04 -0.02 3.27 16 11 C -0.10 -1.64 1.80 -90.62 -0.16 -1.81 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 13 C -0.11 -1.68 5.08 -26.73 -0.14 -1.82 16 14 C -0.12 -1.57 5.92 -26.73 -0.16 -1.72 16 15 C -0.11 -1.36 5.92 -26.73 -0.16 -1.52 16 16 C -0.13 -1.64 5.49 -26.73 -0.15 -1.79 16 17 C 0.15 2.31 1.90 -67.93 -0.13 2.18 16 18 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 19 N -0.71 -10.59 4.30 -54.80 -0.24 -10.82 16 20 C 0.60 9.60 7.79 -12.39 -0.10 9.50 16 21 O -0.53 -9.44 15.47 5.30 0.08 -9.36 16 22 C 0.00 -0.05 7.12 -82.98 -0.59 -0.64 16 23 N -0.26 -3.41 11.96 33.28 0.40 -3.01 16 24 N -0.37 -3.64 6.82 33.42 0.23 -3.41 16 25 H 0.44 2.66 8.96 -190.21 -1.71 0.96 16 26 C 0.01 0.05 7.12 -82.45 -0.59 -0.54 16 27 C -0.14 -1.76 5.99 -104.88 -0.63 -2.39 16 28 C -0.04 -0.45 5.54 -27.79 -0.15 -0.61 16 29 C -0.12 -0.88 5.91 -26.43 -0.16 -1.04 16 30 C -0.12 -0.70 5.89 -26.46 -0.16 -0.85 16 31 C -0.05 -0.28 6.31 -27.66 -0.17 -0.45 16 32 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.38 10.19 6.85 -40.82 -0.28 9.91 16 34 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.42 7.31 -51.93 -0.38 0.04 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.45 7.18 -51.93 -0.37 1.07 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.41 6.00 8.13 -40.82 -0.33 5.67 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 47 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 48 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 51 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 406.70 15.07 6.13 6.13 Total: -1.00 -33.94 406.70 -11.89 -45.83 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -10.17 Total: 11.19 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.70 Total: -7.61 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: 0.80 Total: -64.00 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.94 -11.89 -45.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716516691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.165 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds