Wall clock time and date at job start Sat Apr 11 2020 08:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00287 * 2 1 4 4 H 1.48502 * 109.47290 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47352 * 299.99960 * 3 2 1 6 6 H 1.48499 * 109.47346 * 60.00225 * 3 2 1 7 7 C 1.38820 * 119.99550 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99714 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00013 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46826 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.48116 * 63.09855 * 11 10 9 13 13 N 1.46504 * 109.47199 * 303.09551 * 11 10 9 14 14 C 1.34776 * 119.99975 * 158.52703 * 13 11 10 15 15 O 1.21279 * 119.99913 * 355.30287 * 14 13 11 16 16 C 1.50699 * 119.99842 * 175.31418 * 14 13 11 17 17 H 1.08994 * 109.43243 * 59.89257 * 16 14 13 18 18 C 1.53041 * 109.37774 * 179.72792 * 16 14 13 19 19 C 1.53373 * 109.73873 * 191.73124 * 18 16 14 20 20 C 1.50951 * 108.23909 * 309.40819 * 19 18 16 21 21 N 1.30124 * 128.28735 * 196.62960 * 20 19 18 22 22 N 1.40311 * 108.12634 * 179.86828 * 21 20 19 23 23 H 0.97005 * 126.00997 * 180.02562 * 22 21 20 24 24 C 1.35199 * 107.98860 * 0.03896 * 22 21 20 25 25 C 1.34565 * 107.62067 * 0.04416 * 24 22 21 26 26 C 1.50883 * 128.32825 * 179.71994 * 25 24 22 27 27 C 1.53001 * 109.46850 * 183.10047 * 11 10 9 28 28 C 1.54263 * 110.03452 * 58.99598 * 27 11 10 29 29 C 1.54886 * 104.19804 * 217.10322 * 28 27 11 30 30 C 1.54893 * 102.74683 * 37.94588 * 29 28 27 31 31 C 1.53875 * 110.03260 * 301.82653 * 27 11 10 32 32 H 0.96999 * 119.99401 * 0.02562 * 1 2 3 33 33 H 0.97003 * 119.99923 * 0.02562 * 9 7 2 34 34 H 1.08999 * 109.47314 * 59.99583 * 10 9 7 35 35 H 1.09002 * 109.46534 * 299.99733 * 10 9 7 36 36 H 0.96997 * 119.99638 * 338.52620 * 13 11 10 37 37 H 1.08992 * 109.39622 * 71.66775 * 18 16 14 38 38 H 1.09003 * 109.46244 * 311.82777 * 18 16 14 39 39 H 1.09008 * 109.71283 * 189.71709 * 19 18 16 40 40 H 1.08993 * 109.72114 * 69.11359 * 19 18 16 41 41 H 1.08003 * 126.19059 * 180.02562 * 24 22 21 42 42 H 1.09001 * 109.71208 * 316.40872 * 26 25 24 43 43 H 1.08995 * 109.72038 * 77.01260 * 26 25 24 44 44 H 1.09005 * 110.01763 * 180.43958 * 27 11 10 45 45 H 1.09000 * 110.48692 * 335.78788 * 28 27 11 46 46 H 1.09005 * 110.48610 * 98.42926 * 28 27 11 47 47 H 1.08998 * 110.75800 * 279.63075 * 29 28 27 48 48 H 1.09000 * 110.75381 * 156.25535 * 29 28 27 49 49 H 1.09004 * 110.48459 * 203.37875 * 30 29 28 50 50 H 1.08991 * 110.48735 * 80.73292 * 30 29 28 51 51 H 1.08994 * 110.03700 * 238.56467 * 31 27 11 52 52 H 1.08993 * 110.03109 * 359.95859 * 31 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0635 -4.8197 -0.0012 12 1 0.4743 -4.7936 -0.9178 13 7 0.1725 -4.7009 1.1557 14 6 -1.0245 -5.3203 1.1507 15 8 -1.4006 -5.9049 0.1568 16 6 -1.8956 -5.2863 2.3799 17 1 -2.1333 -4.2518 2.6274 18 6 -3.1908 -6.0541 2.1059 19 6 -4.2006 -5.7837 3.2282 20 6 -3.5134 -6.0254 4.5503 21 7 -4.0552 -6.2012 5.7202 22 7 -3.0254 -6.3930 6.6538 23 1 -3.1391 -6.5477 7.6046 24 6 -1.8466 -6.3239 5.9952 25 6 -2.1180 -6.0966 4.6970 26 6 -1.1480 -5.9328 3.5530 27 6 1.8268 -6.1434 0.0768 28 6 2.6852 -6.1838 1.3580 29 6 3.9810 -6.9130 0.9243 30 6 4.2170 -6.3686 -0.5065 31 6 2.8007 -6.2609 -1.1087 32 1 -0.4849 0.8401 -0.0004 33 1 0.3554 -2.3881 -0.0005 34 1 2.6846 -3.7147 0.8894 35 1 2.6845 -3.7146 -0.8906 36 1 0.4441 -4.1765 1.9251 37 1 -2.9761 -7.1217 2.0608 38 1 -3.6111 -5.7291 1.1541 39 1 -5.0514 -6.4576 3.1274 40 1 -4.5419 -4.7500 3.1746 41 1 -0.8648 -6.4315 6.4322 42 1 -0.3217 -5.2919 3.8605 43 1 -0.7649 -6.9082 3.2532 44 1 1.1267 -6.9788 0.0691 45 1 2.9116 -5.1730 1.6975 46 1 2.1755 -6.7451 2.1411 47 1 3.8295 -7.9923 0.9068 48 1 4.8108 -6.6488 1.5798 49 1 4.8252 -7.0647 -1.0841 50 1 4.6908 -5.3877 -0.4681 51 1 2.5739 -7.1538 -1.6912 52 1 2.7290 -5.3753 -1.7400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716823716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:07 Heat of formation + Delta-G solvation = 22.571720 kcal Electronic energy + Delta-G solvation = -31510.231206 eV Core-core repulsion = 27510.081872 eV Total energy + Delta-G solvation = -4000.149335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60574 -39.95786 -38.35620 -36.08867 -35.12713 -33.54235 -32.41228 -31.10403 -30.57179 -29.72886 -28.68603 -28.42315 -26.19407 -24.76062 -23.54565 -22.52231 -21.72500 -21.14645 -20.52584 -19.93638 -18.86393 -18.72943 -17.77720 -17.22267 -16.70432 -16.15009 -15.49487 -15.37227 -15.06617 -14.60670 -14.54319 -14.37007 -13.93226 -13.74766 -13.54041 -13.38557 -13.31258 -12.95656 -12.87601 -12.74729 -12.46729 -12.06398 -11.97325 -11.73935 -11.41153 -11.11317 -11.03705 -10.94759 -10.93137 -10.88243 -10.85809 -10.81509 -10.65499 -10.40174 -10.38786 -10.15127 -9.84712 -9.73838 -9.50466 -9.35916 -8.88825 -8.56789 -8.53300 -6.94063 -5.78392 -3.07666 1.75741 2.60847 2.70402 3.01285 3.41369 3.47325 3.49577 3.55360 4.32435 4.56032 4.61512 4.75954 4.78734 4.83986 4.85754 4.93970 5.04494 5.18006 5.35987 5.38767 5.46020 5.48346 5.50129 5.53550 5.60205 5.62724 5.67475 5.70757 5.79508 5.83174 5.84893 5.91173 5.93615 5.99491 6.04782 6.06454 6.14211 6.18392 6.21225 6.30899 6.31172 6.35929 6.50774 6.54211 6.56348 6.60762 6.80561 7.03956 7.12848 7.54241 7.68242 7.95827 8.39664 8.63512 9.51588 10.08275 10.43404 11.43966 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007775 B = 0.003530 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3600.354393 B = 7929.155437 C =10069.978527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.144 3.856 11 C 0.144 3.856 12 H 0.084 0.916 13 N -0.708 5.708 14 C 0.521 3.479 15 O -0.548 6.548 16 C -0.106 4.106 17 H 0.101 0.899 18 C -0.094 4.094 19 C -0.041 4.041 20 C 0.087 3.913 21 N -0.292 5.292 22 N -0.488 5.488 23 H 0.438 0.562 24 C 0.061 3.939 25 C -0.231 4.231 26 C -0.028 4.028 27 C -0.096 4.096 28 C -0.122 4.122 29 C -0.124 4.124 30 C -0.123 4.123 31 C -0.121 4.121 32 H 0.254 0.746 33 H 0.386 0.614 34 H 0.029 0.971 35 H 0.034 0.966 36 H 0.403 0.597 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.176 0.824 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 -16.960 10.331 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.016 3.984 11 C 0.039 3.961 12 H 0.102 0.898 13 N -0.358 5.358 14 C 0.307 3.693 15 O -0.426 6.426 16 C -0.128 4.128 17 H 0.120 0.880 18 C -0.132 4.132 19 C -0.080 4.080 20 C -0.082 4.082 21 N -0.115 5.115 22 N -0.196 5.196 23 H 0.281 0.719 24 C -0.084 4.084 25 C -0.242 4.242 26 C -0.066 4.066 27 C -0.116 4.116 28 C -0.159 4.159 29 C -0.161 4.161 30 C -0.161 4.161 31 C -0.159 4.159 32 H 0.064 0.936 33 H 0.220 0.780 34 H 0.046 0.954 35 H 0.052 0.948 36 H 0.238 0.762 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.193 0.807 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.212 -17.327 10.262 20.175 hybrid contribution 1.066 1.263 0.593 1.756 sum -0.146 -16.064 10.856 19.389 Atomic orbital electron populations 1.69676 1.05074 1.25527 1.57537 1.24733 0.95473 0.97629 1.02923 0.86153 0.78789 0.84256 0.77182 1.20582 1.21895 1.21920 1.19241 0.90997 0.84091 1.42871 0.91176 1.42380 1.06004 0.99781 1.89472 1.21070 0.93228 0.85143 0.98963 1.21244 0.90946 0.94356 0.89517 0.89779 1.45961 1.17489 1.51737 1.20654 1.20442 0.81495 0.78268 0.89095 1.90661 1.72704 1.44474 1.34730 1.21352 0.95629 1.02522 0.93255 0.88044 1.21360 0.93068 1.00780 0.98040 1.20206 0.97578 1.02969 0.87243 1.22445 0.93065 0.98356 0.94311 1.77001 1.11915 1.24063 0.98497 1.46309 1.03541 1.59486 1.10269 0.71883 1.22044 0.91689 1.01730 0.92971 1.20029 0.94420 1.15193 0.94600 1.19900 0.95404 1.00869 0.90464 1.22075 0.96799 0.97752 0.94993 1.22509 0.95213 1.01195 0.96979 1.22472 0.97667 0.99429 0.96556 1.22346 0.96854 1.01014 0.95845 1.22204 0.94126 1.02051 0.97505 0.93560 0.78032 0.95387 0.94798 0.76181 0.91147 0.89666 0.89729 0.89451 0.80694 0.90485 0.90836 0.90974 0.90450 0.92357 0.92117 0.92003 0.92267 0.91378 0.92236 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.90 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.57 5.45 -59.91 -0.33 -17.90 16 10 C 0.14 2.67 5.24 -4.05 -0.02 2.65 16 11 C 0.14 2.33 1.82 -67.93 -0.12 2.21 16 12 H 0.08 1.59 7.63 -51.93 -0.40 1.20 16 13 N -0.71 -10.66 4.17 -53.81 -0.22 -10.89 16 14 C 0.52 7.98 7.05 -10.99 -0.08 7.90 16 15 O -0.55 -10.13 15.46 5.56 0.09 -10.05 16 16 C -0.11 -1.31 2.47 -91.55 -0.23 -1.54 16 17 H 0.10 1.30 8.10 -51.93 -0.42 0.87 16 18 C -0.09 -1.11 4.64 -26.52 -0.12 -1.23 16 19 C -0.04 -0.44 6.31 -27.57 -0.17 -0.61 16 20 C 0.09 1.05 7.10 -82.35 -0.58 0.47 16 21 N -0.29 -3.66 12.68 33.75 0.43 -3.23 16 22 N -0.49 -4.51 7.37 30.35 0.22 -4.29 16 23 H 0.44 2.54 8.96 -182.43 -1.64 0.91 16 24 C 0.06 0.54 11.95 -17.37 -0.21 0.33 16 25 C -0.23 -2.52 5.89 -104.98 -0.62 -3.14 16 26 C -0.03 -0.29 5.44 -27.59 -0.15 -0.44 16 27 C -0.10 -1.29 2.91 -89.50 -0.26 -1.55 16 28 C -0.12 -1.43 5.84 -25.08 -0.15 -1.57 16 29 C -0.12 -1.30 6.91 -24.74 -0.17 -1.47 16 30 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 31 C -0.12 -1.53 5.94 -25.61 -0.15 -1.68 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.39 9.98 7.40 -40.82 -0.30 9.68 16 34 H 0.03 0.51 5.93 -51.93 -0.31 0.20 16 35 H 0.03 0.65 6.47 -51.93 -0.34 0.32 16 36 H 0.40 5.84 8.40 -40.82 -0.34 5.50 16 37 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 39 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.08 0.73 8.00 -51.93 -0.42 0.31 16 43 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.08 0.98 5.65 -51.93 -0.29 0.69 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 52 H 0.07 1.02 6.20 -51.93 -0.32 0.69 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -33.23 405.00 -11.25 -44.48 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -9.79 Total: 13.93 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.45 Total: -8.28 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: 0.83 Total: -63.15 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.23 -11.25 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716823716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.055 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds