Wall clock time and date at job start Sat Apr 11 2020 08:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86792 * 120.00280 * 2 1 4 4 H 1.48494 * 109.47288 * 239.99627 * 3 2 1 5 5 H 1.48510 * 109.46959 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47515 * 119.99286 * 3 2 1 7 7 C 1.38814 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00540 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99943 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47069 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47277 * 62.16441 * 11 10 9 13 13 N 1.46499 * 109.47195 * 302.15806 * 11 10 9 14 14 C 1.34770 * 119.99992 * 158.25789 * 13 11 10 15 15 O 1.21282 * 120.00430 * 354.87533 * 14 13 11 16 16 C 1.50698 * 120.00100 * 174.87685 * 14 13 11 17 17 H 1.09000 * 109.42736 * 299.89944 * 16 14 13 18 18 C 1.53026 * 109.43272 * 179.97438 * 16 14 13 19 19 C 1.53373 * 109.74773 * 168.24214 * 18 16 14 20 20 C 1.50942 * 108.20496 * 50.64977 * 19 18 16 21 21 N 1.30135 * 128.29291 * 163.63738 * 20 19 18 22 22 N 1.40311 * 108.12939 * 180.31435 * 21 20 19 23 23 H 0.96998 * 126.00735 * 179.77334 * 22 21 20 24 24 C 1.35199 * 107.98777 * 359.51986 * 22 21 20 25 25 C 1.34575 * 107.62085 * 0.23378 * 24 22 21 26 26 C 1.50883 * 128.32310 * 180.26696 * 25 24 22 27 27 C 1.53001 * 109.46913 * 182.15821 * 11 10 9 28 28 C 1.54265 * 110.03234 * 59.42329 * 27 11 10 29 29 C 1.54890 * 104.19609 * 217.10473 * 28 27 11 30 30 C 1.54888 * 102.74775 * 37.93959 * 29 28 27 31 31 C 1.53879 * 110.03395 * 302.25561 * 27 11 10 32 32 H 0.96996 * 120.00116 * 0.02562 * 1 2 3 33 33 H 0.96994 * 120.00442 * 359.97438 * 9 7 2 34 34 H 1.08995 * 109.47334 * 59.99475 * 10 9 7 35 35 H 1.09000 * 109.46797 * 299.99744 * 10 9 7 36 36 H 0.97000 * 119.99604 * 338.26053 * 13 11 10 37 37 H 1.08998 * 109.42160 * 48.15970 * 18 16 14 38 38 H 1.08999 * 109.42549 * 288.32805 * 18 16 14 39 39 H 1.08998 * 109.72163 * 290.96748 * 19 18 16 40 40 H 1.09005 * 109.71625 * 170.32232 * 19 18 16 41 41 H 1.07998 * 126.18806 * 180.19433 * 24 22 21 42 42 H 1.08991 * 109.71790 * 282.93986 * 26 25 24 43 43 H 1.09001 * 109.71912 * 43.59606 * 26 25 24 44 44 H 1.09000 * 110.01411 * 180.86249 * 27 11 10 45 45 H 1.09002 * 110.48715 * 335.78010 * 28 27 11 46 46 H 1.09002 * 110.48885 * 98.42765 * 28 27 11 47 47 H 1.08998 * 110.75582 * 279.62331 * 29 28 27 48 48 H 1.09000 * 110.75706 * 156.25892 * 29 28 27 49 49 H 1.09003 * 110.48721 * 203.37920 * 30 29 28 50 50 H 1.09008 * 110.48306 * 80.73869 * 30 29 28 51 51 H 1.08997 * 110.02699 * 238.56861 * 31 27 11 52 52 H 1.08992 * 110.03224 * 359.95091 * 31 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.4625 -4.7843 -0.9073 13 7 0.1881 -4.7129 1.1708 14 6 -1.0111 -5.3279 1.1732 15 8 -1.4057 -5.8915 0.1744 16 6 -1.8619 -5.3153 2.4169 17 1 -1.3196 -5.7944 3.2321 18 6 -3.1620 -6.0778 2.1522 19 6 -3.8969 -6.3242 3.4756 20 6 -3.9979 -5.0098 4.2108 21 7 -4.7760 -4.7008 5.2071 22 7 -4.5264 -3.3654 5.5581 23 1 -4.9665 -2.8702 6.2666 24 6 -3.5607 -2.8919 4.7389 25 6 -3.2158 -3.8852 3.8990 26 6 -2.1814 -3.8650 2.8007 27 6 1.8280 -6.1441 0.0555 28 6 2.6951 -6.2019 1.3301 29 6 3.9882 -6.9245 0.8774 30 6 4.2141 -6.3601 -0.5472 31 6 2.7939 -6.2447 -1.1381 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0005 34 1 2.6847 -3.7146 0.8904 35 1 2.6846 -3.7146 -0.8895 36 1 0.4714 -4.1995 1.9435 37 1 -2.9321 -7.0338 1.6818 38 1 -3.7974 -5.4916 1.4884 39 1 -3.3389 -7.0408 4.0784 40 1 -4.8961 -6.7110 3.2749 41 1 -3.1423 -1.8964 4.7551 42 1 -2.5753 -3.3339 1.9343 43 1 -1.2773 -3.3707 3.1561 44 1 1.1281 -6.9796 0.0410 45 1 2.9235 -5.1959 1.6821 46 1 2.1910 -6.7743 2.1088 47 1 3.8370 -8.0034 0.8460 48 1 4.8223 -6.6691 1.5309 49 1 4.8186 -7.0479 -1.1386 50 1 4.6879 -5.3796 -0.4984 51 1 2.5632 -7.1295 -1.7314 52 1 2.7175 -5.3504 -1.7566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716823717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:09 Heat of formation + Delta-G solvation = 2.124691 kcal Electronic energy + Delta-G solvation = -31553.628955 eV Core-core repulsion = 27552.592970 eV Total energy + Delta-G solvation = -4001.035984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.43237 -41.18202 -39.49066 -37.08672 -36.64335 -35.16670 -33.39735 -32.75910 -31.45154 -31.02855 -29.63545 -29.35424 -27.76400 -25.71440 -25.08938 -23.87893 -22.97288 -21.94726 -21.51895 -21.03431 -20.00253 -19.74040 -19.06638 -18.54063 -18.02335 -17.41491 -16.64212 -16.41475 -16.26802 -16.08409 -15.70540 -15.30882 -15.18334 -14.98221 -14.89586 -14.69797 -14.42675 -14.11463 -14.01409 -13.70502 -13.61706 -13.46517 -13.03361 -12.85520 -12.74096 -12.70126 -12.58834 -12.15693 -12.11524 -11.98507 -11.86679 -11.83045 -11.82481 -11.80360 -11.73255 -11.35514 -11.28522 -11.13448 -10.85079 -10.61314 -10.32069 -9.85150 -9.36731 -8.93446 -7.89214 -5.18008 0.97019 1.50542 1.52588 1.58313 1.73565 1.78180 2.01601 2.32762 2.59420 3.43832 3.45311 3.68021 3.71875 3.79025 3.88417 3.90011 3.95042 4.09571 4.19912 4.25147 4.33541 4.41209 4.45019 4.54142 4.59677 4.65743 4.66763 4.74445 4.75187 4.80335 4.82185 4.90539 4.91959 4.97872 5.03713 5.06025 5.17094 5.18026 5.18383 5.22252 5.27945 5.33344 5.36998 5.43275 5.53176 5.55054 5.60264 5.71076 5.72884 6.31092 6.47604 6.69714 6.74101 7.37811 7.38895 8.12698 8.37188 9.33289 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007007 B = 0.004059 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3995.038795 B = 6896.070395 C =10077.359094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.741 5.741 10 C 0.149 3.851 11 C 0.154 3.846 12 H 0.051 0.949 13 N -0.704 5.704 14 C 0.519 3.481 15 O -0.583 6.583 16 C -0.091 4.091 17 H 0.120 0.880 18 C -0.090 4.090 19 C -0.031 4.031 20 C 0.074 3.926 21 N -0.320 5.320 22 N -0.477 5.477 23 H 0.452 0.548 24 C 0.073 3.927 25 C -0.254 4.254 26 C -0.023 4.023 27 C -0.088 4.088 28 C -0.118 4.118 29 C -0.118 4.118 30 C -0.120 4.120 31 C -0.123 4.123 32 H 0.249 0.751 33 H 0.374 0.626 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.408 0.592 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.202 0.798 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.060 0.940 51 H 0.068 0.932 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -13.866 10.541 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.374 4.374 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.023 3.977 11 C 0.049 3.951 12 H 0.069 0.931 13 N -0.354 5.354 14 C 0.306 3.694 15 O -0.463 6.463 16 C -0.113 4.113 17 H 0.138 0.862 18 C -0.128 4.128 19 C -0.070 4.070 20 C -0.094 4.094 21 N -0.143 5.143 22 N -0.187 5.187 23 H 0.298 0.702 24 C -0.074 4.074 25 C -0.265 4.265 26 C -0.062 4.062 27 C -0.108 4.108 28 C -0.155 4.155 29 C -0.155 4.155 30 C -0.158 4.158 31 C -0.161 4.161 32 H 0.058 0.942 33 H 0.206 0.794 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.244 0.756 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.219 0.781 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.446 -14.559 10.633 18.086 hybrid contribution 0.245 2.296 -0.278 2.326 sum -1.201 -12.263 10.355 16.095 Atomic orbital electron populations 1.69812 1.06452 1.25883 1.59350 1.25448 0.96216 1.00670 1.03754 0.85311 0.77223 0.79674 0.78104 1.20957 1.22542 1.20149 1.19541 0.91429 0.85146 1.41260 0.90611 1.42518 1.05610 1.00868 1.89414 1.21151 0.93442 0.83854 0.99283 1.21023 0.90608 0.95058 0.88439 0.93093 1.45924 1.17646 1.52322 1.19479 1.21005 0.81220 0.77198 0.89957 1.90644 1.72636 1.46801 1.36229 1.21310 0.96581 0.98058 0.95303 0.86211 1.21298 0.94172 1.00895 0.96438 1.20180 1.02405 0.90503 0.93927 1.22696 0.94240 0.97982 0.94457 1.76899 1.24711 0.94664 1.18039 1.46329 1.32399 1.09410 1.30600 0.70175 1.22526 0.92135 1.00622 0.92093 1.20101 1.06638 0.94902 1.04881 1.19782 0.96918 0.94403 0.95112 1.21989 0.96777 0.95418 0.96644 1.22463 0.95749 1.01111 0.96172 1.22464 0.97115 0.99883 0.96049 1.22338 0.95733 1.01130 0.96600 1.22222 0.95135 1.01693 0.97021 0.94188 0.79383 0.93905 0.94869 0.75637 0.89809 0.92917 0.87859 0.88848 0.78130 0.92990 0.90046 0.91758 0.91374 0.91364 0.90917 0.90743 0.90579 0.92130 0.91344 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.08 13.06 21.65 0.28 -56.80 16 2 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -12.86 9.99 84.03 0.84 -12.02 16 8 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -35.64 5.46 -343.45 -1.87 -37.51 16 10 C 0.15 5.54 5.24 86.38 0.45 5.99 16 11 C 0.15 5.08 1.82 44.99 0.08 5.17 16 12 H 0.05 2.04 7.61 -2.39 -0.02 2.02 16 13 N -0.70 -21.45 4.24 -442.55 -1.88 -23.32 16 14 C 0.52 16.20 7.05 87.66 0.62 16.81 16 15 O -0.58 -22.34 15.45 -3.03 -0.05 -22.39 16 16 C -0.09 -2.24 2.48 -11.40 -0.03 -2.27 16 17 H 0.12 2.37 8.10 -2.39 -0.02 2.35 16 18 C -0.09 -2.11 4.64 30.73 0.14 -1.96 16 19 C -0.03 -0.62 6.31 30.05 0.19 -0.43 16 20 C 0.07 1.83 7.10 43.44 0.31 2.13 16 21 N -0.32 -8.07 12.68 -47.14 -0.60 -8.66 16 22 N -0.48 -9.45 7.37 -57.88 -0.43 -9.88 16 23 H 0.45 5.74 8.96 -213.19 -1.91 3.83 16 24 C 0.07 1.52 11.95 83.33 1.00 2.52 16 25 C -0.25 -6.29 5.89 -20.10 -0.12 -6.40 16 26 C -0.02 -0.62 5.37 30.03 0.16 -0.45 16 27 C -0.09 -2.34 2.92 -10.07 -0.03 -2.37 16 28 C -0.12 -2.60 5.83 31.67 0.18 -2.42 16 29 C -0.12 -2.20 6.91 31.89 0.22 -1.98 16 30 C -0.12 -2.48 6.83 31.67 0.22 -2.26 16 31 C -0.12 -3.02 5.93 31.32 0.19 -2.84 16 32 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.37 19.63 7.43 -92.71 -0.69 18.94 16 34 H 0.04 1.51 5.98 -2.39 -0.01 1.49 16 35 H 0.03 1.27 6.41 -2.39 -0.02 1.26 16 36 H 0.41 11.69 8.06 -92.71 -0.75 10.94 16 37 H 0.08 1.95 7.68 -2.39 -0.02 1.93 16 38 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 39 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.05 1.66 8.12 -2.39 -0.02 1.64 16 43 H 0.08 2.07 7.76 -2.39 -0.02 2.05 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 1.64 5.68 -2.39 -0.01 1.63 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 51 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.06 1.58 6.18 -2.39 -0.01 1.56 16 Total: -1.00 -70.02 404.46 -0.01 -70.03 By element: Atomic # 1 Polarization: 50.35 SS G_CDS: -2.39 Total: 47.96 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 4.89 Total: -6.09 kcal Atomic # 7 Polarization: -131.69 SS G_CDS: -4.49 Total: -136.18 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -70.02 -0.01 -70.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716823717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.155 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds