Wall clock time and date at job start Sat Apr 11 2020 08:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48497 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47358 * 299.99751 * 3 2 1 6 6 H 1.48504 * 109.47394 * 59.99872 * 3 2 1 7 7 C 1.38810 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99544 * 180.02562 * 9 7 2 11 11 C 1.53122 * 109.52111 * 204.99794 * 10 9 7 12 12 C 1.53032 * 109.27849 * 182.37830 * 11 10 9 13 13 N 1.46850 * 109.52578 * 59.17901 * 12 11 10 14 14 C 1.46895 * 111.00275 * 174.15982 * 13 12 11 15 15 C 1.52995 * 109.47421 * 170.00452 * 14 13 12 16 16 N 1.46494 * 109.47520 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00044 * 179.97438 * 16 15 14 18 18 O 1.21273 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99657 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.46678 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.46899 * 180.02562 * 20 19 17 22 22 C 1.38227 * 119.62059 * 125.01804 * 21 20 19 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 304.99234 * 21 20 19 27 27 C 1.46842 * 111.19974 * 298.26248 * 13 12 11 28 28 C 1.53040 * 109.52574 * 61.73302 * 27 13 12 29 29 H 0.96997 * 120.00539 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00018 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.52508 * 325.12428 * 10 9 7 32 32 H 1.09003 * 109.49952 * 62.43883 * 11 10 9 33 33 H 1.09002 * 109.50522 * 302.32150 * 11 10 9 34 34 H 1.09005 * 109.46623 * 299.16198 * 12 11 10 35 35 H 1.09003 * 109.45353 * 179.19027 * 12 11 10 36 36 H 1.08998 * 109.47291 * 50.00180 * 14 13 12 37 37 H 1.09003 * 109.47395 * 290.00373 * 14 13 12 38 38 H 1.08998 * 109.47110 * 59.99618 * 15 14 13 39 39 H 1.09003 * 109.46772 * 300.00302 * 15 14 13 40 40 H 0.97001 * 120.00288 * 0.02562 * 16 15 14 41 41 H 1.08995 * 109.47052 * 60.00215 * 19 17 16 42 42 H 1.09000 * 109.46920 * 299.99657 * 19 17 16 43 43 H 1.08995 * 109.47755 * 59.99971 * 20 19 17 44 44 H 1.08999 * 109.47059 * 299.99460 * 20 19 17 45 45 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 46 46 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 47 47 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 48 48 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 49 49 H 1.08995 * 109.46354 * 181.75917 * 27 13 12 50 50 H 1.08999 * 109.46000 * 301.72252 * 27 13 12 51 51 H 1.09001 * 109.50138 * 180.87755 * 28 27 13 52 52 H 1.09003 * 109.49838 * 60.76365 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1813 -4.7539 -0.6104 12 6 1.9287 -6.0880 -0.5535 13 7 2.2490 -6.4120 0.8425 14 6 2.8439 -7.7509 0.9491 15 6 3.3896 -7.9555 2.3637 16 7 3.9833 -9.2905 2.4699 17 6 4.5312 -9.6938 3.6334 18 8 4.5323 -8.9517 4.5926 19 6 5.1425 -11.0670 3.7423 20 6 5.6881 -11.2715 5.1571 21 6 6.3000 -12.6444 5.2659 22 6 7.6084 -12.7775 5.6914 23 6 8.1598 -14.0453 5.7932 24 6 7.3745 -15.1360 5.4520 25 6 6.0740 -14.9253 5.0350 26 7 5.5808 -13.7048 4.9545 27 6 3.1289 -5.3966 1.4349 28 6 2.4173 -4.0417 1.4373 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.9702 -3.5508 -0.5880 32 1 0.9575 -4.5061 -1.6480 33 1 0.2521 -4.8330 -0.0460 34 1 2.8510 -6.0126 -1.1296 35 1 1.3012 -6.8739 -0.9740 36 1 3.6565 -7.8459 0.2290 37 1 2.0838 -8.5039 0.7405 38 1 2.5769 -7.8605 3.0839 39 1 4.1496 -7.2025 2.5723 40 1 3.9828 -9.8840 1.7026 41 1 5.9551 -11.1611 3.0220 42 1 4.3829 -11.8204 3.5338 43 1 4.8753 -11.1775 5.8771 44 1 6.4476 -10.5181 5.3660 45 1 8.1924 -11.9051 5.9447 46 1 9.1784 -14.1800 6.1264 47 1 7.7727 -16.1379 5.5159 48 1 5.4546 -15.7697 4.7714 49 1 3.3734 -5.6803 2.4585 50 1 4.0455 -5.3242 0.8495 51 1 3.0766 -3.2851 1.8627 52 1 1.5076 -4.1096 2.0339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717016287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:19 Heat of formation + Delta-G solvation = 5.683314 kcal Electronic energy + Delta-G solvation = -28686.494092 eV Core-core repulsion = 24685.612421 eV Total energy + Delta-G solvation = -4000.881671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74625 -39.92513 -38.85455 -35.85663 -34.55650 -34.36985 -32.82478 -32.30024 -30.88373 -30.47908 -29.73051 -27.80488 -25.57791 -24.26406 -23.94045 -23.27603 -22.30374 -21.81746 -21.01337 -20.46610 -19.28429 -17.70848 -17.04528 -16.98031 -16.77492 -16.46681 -16.02121 -15.79847 -15.42329 -15.05579 -14.76233 -14.55655 -14.32179 -14.07813 -13.86863 -13.66724 -13.55878 -13.38132 -13.17734 -13.06483 -12.81275 -12.48374 -12.36272 -12.04339 -11.87030 -11.59508 -11.57139 -11.45741 -11.15224 -10.86717 -10.73468 -10.54742 -10.37053 -10.21843 -10.12747 -10.10954 -9.89039 -9.69178 -9.55438 -9.43519 -9.27190 -8.83518 -8.21567 -6.90613 -5.72858 -3.01162 0.61273 0.79040 2.42549 2.83598 3.31758 3.45340 3.50962 3.53138 3.79618 4.05016 4.22608 4.35746 4.48596 4.58443 4.61783 4.61983 4.67405 4.75071 4.85006 4.91372 5.10115 5.20542 5.22659 5.26288 5.27360 5.36896 5.44863 5.46324 5.61274 5.64711 5.68781 5.69424 5.70903 5.73473 5.77457 5.82329 5.92061 6.07405 6.15698 6.17969 6.22166 6.31295 6.51505 6.54599 6.69457 6.91478 7.11662 7.20976 7.25888 7.29403 7.51680 7.73741 7.98689 8.45989 9.57070 10.16049 10.50956 11.49990 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.001365 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.894176 B =20509.254973 C =21193.421331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.177 3.823 11 C -0.121 4.121 12 C 0.064 3.936 13 N -0.532 5.532 14 C 0.046 3.954 15 C 0.113 3.887 16 N -0.731 5.731 17 C 0.512 3.488 18 O -0.539 6.539 19 C -0.130 4.130 20 C -0.054 4.054 21 C 0.132 3.868 22 C -0.169 4.169 23 C -0.073 4.073 24 C -0.181 4.181 25 C 0.102 3.898 26 N -0.483 5.483 27 C 0.050 3.950 28 C -0.132 4.132 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.400 0.600 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.156 0.844 49 H 0.073 0.927 50 H 0.028 0.972 51 H 0.064 0.936 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.678 -33.631 6.997 37.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.067 3.933 11 C -0.160 4.160 12 C -0.064 4.064 13 N -0.257 5.257 14 C -0.083 4.083 15 C -0.010 4.010 16 N -0.383 5.383 17 C 0.299 3.701 18 O -0.415 6.415 19 C -0.171 4.171 20 C -0.093 4.093 21 C -0.006 4.006 22 C -0.189 4.189 23 C -0.099 4.099 24 C -0.201 4.201 25 C -0.055 4.055 26 N -0.192 5.192 27 C -0.078 4.078 28 C -0.173 4.173 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.106 0.894 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.173 0.827 49 H 0.092 0.908 50 H 0.047 0.953 51 H 0.083 0.917 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.498 -32.788 7.658 36.275 hybrid contribution 1.840 0.421 -0.534 1.962 sum 15.338 -32.367 7.123 36.519 Atomic orbital electron populations 1.69672 1.05080 1.25451 1.57941 1.24727 0.95487 0.97608 1.03182 0.86150 0.78776 0.84315 0.77161 1.20620 1.21937 1.21900 1.19292 0.90972 0.84202 1.42318 0.91251 1.42426 1.05797 0.99729 1.88505 1.20238 0.94138 0.86114 0.92788 1.21861 0.99652 0.93176 1.01298 1.22057 0.98821 0.98192 0.87315 1.61982 1.44374 1.00702 1.18655 1.22218 0.98033 0.92911 0.95105 1.21559 0.98523 0.83377 0.97573 1.45974 1.60580 1.17784 1.13979 1.20665 0.77964 0.89028 0.82469 1.90734 1.57627 1.56007 1.37149 1.21552 1.02167 0.94693 0.98652 1.20290 1.01656 0.90486 0.96832 1.21312 0.90754 0.94745 0.93776 1.22050 0.96361 0.98597 1.01871 1.21625 1.00122 0.92448 0.95717 1.22162 0.95984 1.00143 1.01797 1.22784 0.93380 0.94467 0.94865 1.67488 1.37890 0.98890 1.14954 1.22313 0.93744 0.92867 0.98904 1.22314 1.00541 0.93301 1.01120 0.93614 0.78245 0.94117 0.91484 0.91246 0.95076 0.91225 0.94586 0.90308 0.90325 0.90846 0.76666 0.89095 0.87746 0.88923 0.89374 0.84594 0.84789 0.84817 0.82678 0.90831 0.95325 0.91721 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.90 22.65 29.55 -169.99 -5.02 17.63 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -18.40 5.13 -53.31 -0.27 -18.67 16 10 C 0.18 3.57 2.84 -67.81 -0.19 3.38 16 11 C -0.12 -2.03 5.57 -26.65 -0.15 -2.18 16 12 C 0.06 0.86 5.42 -3.83 -0.02 0.84 16 13 N -0.53 -7.09 4.81 -234.68 -1.13 -8.22 16 14 C 0.05 0.46 5.39 -3.83 -0.02 0.44 16 15 C 0.11 1.20 4.92 -4.05 -0.02 1.18 16 16 N -0.73 -6.16 5.56 -60.30 -0.33 -6.49 16 17 C 0.51 5.11 7.83 -10.98 -0.09 5.02 16 18 O -0.54 -7.65 15.98 5.56 0.09 -7.56 16 19 C -0.13 -0.91 5.56 -27.88 -0.15 -1.06 16 20 C -0.05 -0.42 4.90 -27.88 -0.14 -0.55 16 21 C 0.13 1.00 6.18 -82.58 -0.51 0.49 16 22 C -0.17 -1.04 9.71 -39.44 -0.38 -1.42 16 23 C -0.07 -0.37 10.18 -39.28 -0.40 -0.77 16 24 C -0.18 -0.88 10.11 -39.44 -0.40 -1.28 16 25 C 0.10 0.63 11.18 -17.55 -0.20 0.43 16 26 N -0.48 -3.98 9.88 -9.47 -0.09 -4.07 16 27 C 0.05 0.73 4.85 -3.83 -0.02 0.71 16 28 C -0.13 -2.44 5.68 -26.65 -0.15 -2.59 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.38 10.39 7.80 -40.82 -0.32 10.07 16 31 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 36 H 0.04 0.33 8.08 -51.93 -0.42 -0.08 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.88 6.21 -51.93 -0.32 0.56 16 40 H 0.40 2.17 8.47 -40.82 -0.35 1.82 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.68 7.95 -51.93 -0.41 0.27 16 43 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 44 H 0.09 0.65 7.83 -51.93 -0.41 0.24 16 45 H 0.14 0.60 7.95 -52.49 -0.42 0.19 16 46 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 47 H 0.13 0.32 8.06 -52.49 -0.42 -0.10 16 48 H 0.16 0.57 8.06 -52.49 -0.42 0.15 16 49 H 0.07 1.03 5.81 -51.93 -0.30 0.72 16 50 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 51 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 52 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 419.02 15.07 6.31 6.31 Total: -1.00 -34.43 419.02 -11.63 -46.07 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.83 Total: 7.43 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.08 Total: -4.65 kcal Atomic # 7 Polarization: -64.12 SS G_CDS: -1.11 Total: -65.23 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.09 Total: -7.56 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.43 -11.63 -46.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717016287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.748 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds