Wall clock time and date at job start Sat Apr 11 2020 08:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48497 * 109.47162 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47358 * 299.99751 * 3 2 1 6 6 H 1.48504 * 109.47394 * 59.99872 * 3 2 1 7 7 C 1.38810 * 120.00007 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99714 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99544 * 180.02562 * 9 7 2 11 11 C 1.53122 * 109.52111 * 204.99794 * 10 9 7 12 12 C 1.53032 * 109.27849 * 182.37830 * 11 10 9 13 13 N 1.46850 * 109.52578 * 59.17901 * 12 11 10 14 14 C 1.46895 * 111.00275 * 174.15982 * 13 12 11 15 15 C 1.52995 * 109.47421 * 170.00452 * 14 13 12 16 16 N 1.46494 * 109.47520 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00044 * 179.97438 * 16 15 14 18 18 O 1.21273 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99657 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.46678 * 180.02562 * 19 17 16 21 21 C 1.50707 * 109.46899 * 180.02562 * 20 19 17 22 22 C 1.38227 * 119.62059 * 125.01804 * 21 20 19 23 23 C 1.38627 * 119.15702 * 179.74122 * 22 21 20 24 24 C 1.38669 * 118.42389 * 0.47826 * 23 22 21 25 25 C 1.38186 * 119.16143 * 359.49762 * 24 23 22 26 26 N 1.31856 * 119.61137 * 304.99234 * 21 20 19 27 27 C 1.46842 * 111.19974 * 298.26248 * 13 12 11 28 28 C 1.53040 * 109.52574 * 61.73302 * 27 13 12 29 29 H 0.96997 * 120.00539 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00018 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.52508 * 325.12428 * 10 9 7 32 32 H 1.09003 * 109.49952 * 62.43883 * 11 10 9 33 33 H 1.09002 * 109.50522 * 302.32150 * 11 10 9 34 34 H 1.09005 * 109.46623 * 299.16198 * 12 11 10 35 35 H 1.09003 * 109.45353 * 179.19027 * 12 11 10 36 36 H 1.08998 * 109.47291 * 50.00180 * 14 13 12 37 37 H 1.09003 * 109.47395 * 290.00373 * 14 13 12 38 38 H 1.08998 * 109.47110 * 59.99618 * 15 14 13 39 39 H 1.09003 * 109.46772 * 300.00302 * 15 14 13 40 40 H 0.97001 * 120.00288 * 0.02562 * 16 15 14 41 41 H 1.08995 * 109.47052 * 60.00215 * 19 17 16 42 42 H 1.09000 * 109.46920 * 299.99657 * 19 17 16 43 43 H 1.08995 * 109.47755 * 59.99971 * 20 19 17 44 44 H 1.08999 * 109.47059 * 299.99460 * 20 19 17 45 45 H 1.07998 * 120.41916 * 359.95342 * 22 21 20 46 46 H 1.08008 * 120.78688 * 180.22921 * 23 22 21 47 47 H 1.08002 * 120.42244 * 179.78279 * 24 23 22 48 48 H 1.07996 * 119.61757 * 180.25243 * 25 24 23 49 49 H 1.08995 * 109.46354 * 181.75917 * 27 13 12 50 50 H 1.08999 * 109.46000 * 301.72252 * 27 13 12 51 51 H 1.09001 * 109.50138 * 180.87755 * 28 27 13 52 52 H 1.09003 * 109.49838 * 60.76365 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1813 -4.7539 -0.6104 12 6 1.9287 -6.0880 -0.5535 13 7 2.2490 -6.4120 0.8425 14 6 2.8439 -7.7509 0.9491 15 6 3.3896 -7.9555 2.3637 16 7 3.9833 -9.2905 2.4699 17 6 4.5312 -9.6938 3.6334 18 8 4.5323 -8.9517 4.5926 19 6 5.1425 -11.0670 3.7423 20 6 5.6881 -11.2715 5.1571 21 6 6.3000 -12.6444 5.2659 22 6 7.6084 -12.7775 5.6914 23 6 8.1598 -14.0453 5.7932 24 6 7.3745 -15.1360 5.4520 25 6 6.0740 -14.9253 5.0350 26 7 5.5808 -13.7048 4.9545 27 6 3.1289 -5.3966 1.4349 28 6 2.4173 -4.0417 1.4373 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.9702 -3.5508 -0.5880 32 1 0.9575 -4.5061 -1.6480 33 1 0.2521 -4.8330 -0.0460 34 1 2.8510 -6.0126 -1.1296 35 1 1.3012 -6.8739 -0.9740 36 1 3.6565 -7.8459 0.2290 37 1 2.0838 -8.5039 0.7405 38 1 2.5769 -7.8605 3.0839 39 1 4.1496 -7.2025 2.5723 40 1 3.9828 -9.8840 1.7026 41 1 5.9551 -11.1611 3.0220 42 1 4.3829 -11.8204 3.5338 43 1 4.8753 -11.1775 5.8771 44 1 6.4476 -10.5181 5.3660 45 1 8.1924 -11.9051 5.9447 46 1 9.1784 -14.1800 6.1264 47 1 7.7727 -16.1379 5.5159 48 1 5.4546 -15.7697 4.7714 49 1 3.3734 -5.6803 2.4585 50 1 4.0455 -5.3242 0.8495 51 1 3.0766 -3.2851 1.8627 52 1 1.5076 -4.1096 2.0339 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717016287.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:19 Heat of formation + Delta-G solvation = -18.858687 kcal Electronic energy + Delta-G solvation = -28687.558313 eV Core-core repulsion = 24685.612421 eV Total energy + Delta-G solvation = -4001.945892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25052 -40.72002 -40.03508 -37.15322 -35.74046 -35.08486 -33.99752 -33.24466 -31.97862 -31.59684 -31.02538 -28.96713 -26.48685 -25.70155 -24.64740 -24.36749 -23.47078 -22.58287 -22.11882 -21.25391 -20.72402 -19.09707 -18.34486 -17.55889 -17.41600 -17.23370 -16.86132 -16.70154 -16.28874 -16.18037 -15.86778 -15.69093 -15.41612 -15.32310 -15.04384 -14.79768 -14.60066 -14.30763 -14.11851 -14.03953 -13.82257 -13.58334 -13.13789 -13.00749 -12.97336 -12.89183 -12.66441 -12.50094 -12.46164 -12.21234 -12.13244 -12.12276 -12.03673 -11.76531 -11.51455 -11.17484 -10.98353 -10.85438 -10.76640 -10.34544 -10.10078 -9.86984 -9.25336 -8.99111 -7.94045 -5.22309 0.19148 0.39077 1.45998 1.46991 1.56751 1.64055 2.08422 2.55809 2.87456 3.04479 3.35575 3.38966 3.72421 3.78008 3.82194 3.88129 4.01695 4.08037 4.08120 4.18442 4.20084 4.22600 4.28655 4.33992 4.35426 4.38281 4.50246 4.55592 4.64418 4.70572 4.74881 4.75670 4.86432 4.89409 4.93688 4.96257 4.98212 4.99289 5.10653 5.12229 5.20872 5.30242 5.32124 5.42231 5.43958 5.49906 5.60904 5.83215 6.10562 6.16848 6.28850 6.54697 7.07488 7.26057 7.34103 8.11261 8.34597 9.29839 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.001365 C = 0.001321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.894176 B =20509.254973 C =21193.421331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.238 4.238 8 H 0.073 0.927 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.114 4.114 12 C 0.072 3.928 13 N -0.545 5.545 14 C 0.054 3.946 15 C 0.119 3.881 16 N -0.716 5.716 17 C 0.510 3.490 18 O -0.586 6.586 19 C -0.117 4.117 20 C -0.052 4.052 21 C 0.114 3.886 22 C -0.178 4.178 23 C -0.077 4.077 24 C -0.178 4.178 25 C 0.087 3.913 26 N -0.509 5.509 27 C 0.062 3.938 28 C -0.124 4.124 29 H 0.250 0.750 30 H 0.372 0.628 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.418 0.582 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.148 0.852 46 H 0.159 0.841 47 H 0.161 0.839 48 H 0.175 0.825 49 H 0.080 0.920 50 H 0.036 0.964 51 H 0.044 0.956 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.753 -36.454 6.127 40.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.152 4.152 12 C -0.056 4.056 13 N -0.271 5.271 14 C -0.074 4.074 15 C -0.005 4.005 16 N -0.370 5.370 17 C 0.298 3.702 18 O -0.467 6.467 19 C -0.157 4.157 20 C -0.090 4.090 21 C -0.023 4.023 22 C -0.198 4.198 23 C -0.103 4.103 24 C -0.197 4.197 25 C -0.070 4.070 26 N -0.219 5.219 27 C -0.066 4.066 28 C -0.164 4.164 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.255 0.745 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.165 0.835 46 H 0.177 0.823 47 H 0.178 0.822 48 H 0.192 0.808 49 H 0.098 0.902 50 H 0.054 0.946 51 H 0.063 0.937 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.611 -35.681 6.754 39.528 hybrid contribution 1.222 1.174 -0.237 1.711 sum 16.833 -34.507 6.517 38.943 Atomic orbital electron populations 1.69826 1.06594 1.25875 1.59836 1.25528 0.96345 1.00964 1.03986 0.85114 0.78234 0.80036 0.76646 1.19112 1.21933 1.22214 1.19653 0.91315 0.85380 1.40615 0.90903 1.42651 1.05411 1.01028 1.88610 1.20491 0.94130 0.85227 0.93877 1.21747 0.98910 0.94042 1.00512 1.21997 0.99268 0.96737 0.87576 1.61907 1.44722 1.01775 1.18659 1.22221 0.99155 0.91172 0.94802 1.21343 0.97461 0.84100 0.97624 1.45820 1.59551 1.17249 1.14338 1.21203 0.77322 0.89653 0.81994 1.90717 1.59556 1.57536 1.38855 1.21491 1.02748 0.92628 0.98812 1.20200 1.00967 0.91047 0.96784 1.21282 0.91509 0.94395 0.95158 1.22259 0.96025 0.99809 1.01695 1.21994 1.01305 0.91964 0.95045 1.22497 0.95399 1.01447 1.00373 1.23213 0.94456 0.94343 0.94986 1.67440 1.38753 0.99736 1.15987 1.22100 0.93554 0.91124 0.99831 1.22109 0.99665 0.95369 0.99274 0.94094 0.79669 0.94589 0.91646 0.92385 0.94083 0.88373 0.92625 0.88211 0.92426 0.92353 0.74518 0.86950 0.86966 0.90999 0.89552 0.83467 0.82332 0.82160 0.80823 0.90181 0.94551 0.93745 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.97 47.15 29.55 68.60 2.03 49.17 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.24 -13.53 9.93 84.03 0.83 -12.70 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -38.40 5.13 -322.56 -1.65 -40.05 16 10 C 0.17 6.93 2.84 45.07 0.13 7.06 16 11 C -0.11 -3.72 5.57 30.65 0.17 -3.55 16 12 C 0.07 1.74 5.42 86.32 0.47 2.21 16 13 N -0.54 -13.34 4.81 -896.39 -4.31 -17.65 16 14 C 0.05 0.92 5.39 86.30 0.46 1.38 16 15 C 0.12 2.35 4.92 86.38 0.43 2.77 16 16 N -0.72 -10.73 5.56 -463.08 -2.57 -13.30 16 17 C 0.51 9.82 7.83 87.66 0.69 10.51 16 18 O -0.59 -17.01 15.98 -3.01 -0.05 -17.06 16 19 C -0.12 -1.50 5.56 29.85 0.17 -1.34 16 20 C -0.05 -0.80 4.90 29.85 0.15 -0.65 16 21 C 0.11 1.67 6.18 42.55 0.26 1.93 16 22 C -0.18 -1.99 9.71 22.36 0.22 -1.77 16 23 C -0.08 -0.61 10.18 22.47 0.23 -0.38 16 24 C -0.18 -1.31 10.11 22.36 0.23 -1.09 16 25 C 0.09 0.93 11.18 84.67 0.95 1.88 16 26 N -0.51 -7.98 9.88 -183.88 -1.82 -9.80 16 27 C 0.06 1.77 4.85 86.33 0.42 2.19 16 28 C -0.12 -4.63 5.68 30.65 0.17 -4.46 16 29 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.37 20.83 7.80 -92.71 -0.72 20.11 16 31 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.10 1.88 8.12 -2.39 -0.02 1.86 16 36 H 0.06 0.78 8.08 -2.39 -0.02 0.77 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.35 6.21 -2.39 -0.01 1.33 16 40 H 0.42 3.25 8.47 -92.71 -0.79 2.46 16 41 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.11 1.30 7.95 -2.39 -0.02 1.29 16 43 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 44 H 0.09 1.31 7.83 -2.39 -0.02 1.29 16 45 H 0.15 1.16 7.95 -2.91 -0.02 1.14 16 46 H 0.16 0.39 8.06 -2.91 -0.02 0.36 16 47 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 48 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 49 H 0.08 2.19 5.81 -2.39 -0.01 2.18 16 50 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 51 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -76.88 419.02 -2.25 -79.13 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.59 Total: 30.00 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.43 Total: -0.02 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -10.07 Total: -141.23 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.05 Total: -17.06 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -76.88 -2.25 -79.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717016287.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.274 kcal (2) G-P(sol) polarization free energy of solvation -76.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds