Wall clock time and date at job start Sat Apr 11 2020 08:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 119.99849 * 2 1 4 4 H 1.48504 * 109.47121 * 239.99705 * 3 2 1 5 5 H 1.48505 * 109.47401 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47477 * 120.00066 * 3 2 1 7 7 C 1.38815 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99427 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99381 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46717 * 180.02562 * 10 9 7 12 12 H 1.09000 * 110.01831 * 306.38811 * 11 10 9 13 13 C 1.53877 * 110.03579 * 67.82956 * 11 10 9 14 14 C 1.54472 * 106.68422 * 119.44190 * 13 11 10 15 15 C 1.54893 * 104.10155 * 23.34415 * 14 13 11 16 16 H 1.08995 * 110.75463 * 80.70776 * 15 14 13 17 17 N 1.46499 * 110.75644 * 203.89399 * 15 14 13 18 18 C 1.34777 * 119.99665 * 271.34255 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 C 1.40059 * 126.10095 * 265.02154 * 21 20 18 23 23 N 1.31027 * 108.25672 * 179.97438 * 22 21 20 24 24 N 1.39651 * 108.12858 * 359.97438 * 23 22 21 25 25 C 1.34748 * 126.10263 * 84.71020 * 21 20 18 26 26 C 1.50874 * 127.76326 * 0.67564 * 25 21 20 27 27 C 1.53434 * 108.23342 * 163.85110 * 26 25 21 28 28 C 1.53151 * 109.19295 * 48.35449 * 27 26 25 29 29 C 1.46588 * 127.55197 * 180.10645 * 24 23 22 30 30 C 1.54265 * 110.03343 * 184.99790 * 11 10 9 31 31 H 0.96998 * 120.00661 * 0.02562 * 1 2 3 32 32 H 0.97001 * 120.00374 * 359.97438 * 9 7 2 33 33 H 1.08994 * 109.47340 * 59.99960 * 10 9 7 34 34 H 1.09005 * 109.47107 * 299.99417 * 10 9 7 35 35 H 1.08998 * 110.03116 * 238.56929 * 13 11 10 36 36 H 1.09000 * 110.02951 * 359.95527 * 13 11 10 37 37 H 1.08994 * 110.40150 * 264.75959 * 14 13 11 38 38 H 1.09002 * 110.65544 * 142.05242 * 14 13 11 39 39 H 0.97001 * 119.99790 * 91.05968 * 17 15 14 40 40 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 41 41 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 42 42 H 1.07994 * 125.87309 * 359.95842 * 22 21 20 43 43 H 1.09005 * 109.85598 * 44.07449 * 26 25 21 44 44 H 1.08993 * 109.57012 * 283.47187 * 26 25 21 45 45 H 1.08997 * 109.52385 * 288.43964 * 27 26 25 46 46 H 1.09005 * 109.51923 * 168.26515 * 27 26 25 47 47 H 1.08999 * 109.46169 * 170.53284 * 28 27 26 48 48 H 1.09009 * 109.45807 * 50.58581 * 28 27 26 49 49 H 1.08998 * 109.58383 * 282.44237 * 29 24 23 50 50 H 1.08998 * 109.58295 * 42.85336 * 29 24 23 51 51 H 1.08998 * 110.49127 * 98.42295 * 30 11 10 52 52 H 1.09000 * 110.48641 * 335.78211 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 6 1.0640 -4.8196 0.0008 12 1 0.3587 -4.7082 0.8244 13 6 0.3083 -4.8662 -1.3388 14 6 0.6253 -6.2355 -1.9795 15 6 1.0228 -7.1306 -0.7795 16 1 0.1369 -7.5026 -0.2649 17 7 1.8704 -8.2418 -1.2190 18 6 1.3090 -9.3993 -1.6212 19 8 0.1025 -9.5226 -1.6144 20 6 2.1807 -10.5401 -2.0791 21 6 1.3136 -11.7086 -2.4714 22 6 0.9650 -12.7895 -1.6518 23 7 0.2022 -13.5998 -2.3433 24 7 0.0416 -13.0604 -3.6214 25 6 0.7305 -11.8969 -3.6715 26 6 0.8150 -11.0101 -4.8892 27 6 0.3411 -11.8175 -6.1049 28 6 -0.9820 -12.5097 -5.7649 29 6 -0.7312 -13.6174 -4.7356 30 6 1.8178 -6.1595 0.1282 31 1 -0.4851 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6841 -3.7140 0.8921 34 1 2.6855 -3.7149 -0.8879 35 1 -0.7642 -4.7777 -1.1658 36 1 0.6493 -4.0597 -1.9880 37 1 1.4560 -6.1445 -2.6792 38 1 -0.2548 -6.6384 -2.4809 39 1 2.8353 -8.1431 -1.2245 40 1 2.7733 -10.2229 -2.9372 41 1 2.8455 -10.8377 -1.2683 42 1 1.2724 -12.9309 -0.6262 43 1 1.8448 -10.6869 -5.0411 44 1 0.1729 -10.1401 -4.7524 45 1 1.0900 -12.5678 -6.3582 46 1 0.1944 -11.1476 -6.9522 47 1 -1.4074 -12.9443 -6.6694 48 1 -1.6780 -11.7797 -5.3512 49 1 -0.1701 -14.4284 -5.2000 50 1 -1.6846 -13.9949 -4.3663 51 1 1.8061 -6.5071 1.1612 52 1 2.8425 -6.0562 -0.2289 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717873447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:37 Heat of formation + Delta-G solvation = 2.492493 kcal Electronic energy + Delta-G solvation = -29902.489840 eV Core-core repulsion = 25901.469804 eV Total energy + Delta-G solvation = -4001.020035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.53563 -40.76774 -39.15309 -37.40005 -36.39405 -34.71682 -34.28282 -32.90068 -31.42775 -31.14949 -30.07244 -29.01861 -27.16964 -25.97976 -25.12771 -23.93635 -23.17977 -22.32478 -21.56508 -21.09859 -20.40687 -19.67662 -19.07000 -17.98011 -17.54027 -17.06081 -16.69121 -16.60394 -16.47155 -16.04993 -15.49119 -15.36697 -15.19646 -15.13207 -15.02687 -14.77369 -14.53869 -14.39933 -14.18411 -13.91191 -13.54132 -13.32870 -13.27043 -12.94719 -12.84324 -12.74989 -12.67451 -12.39685 -12.20266 -12.06776 -11.98633 -11.92786 -11.86129 -11.81289 -11.68877 -11.48754 -11.44211 -11.26408 -10.88503 -10.80123 -10.12727 -9.91715 -9.24630 -8.96289 -7.92684 -5.21205 0.95129 1.48137 1.51475 1.57583 1.62468 1.74949 1.82235 2.47301 2.58906 3.40596 3.44687 3.62538 3.66410 3.70651 3.78495 3.81612 3.88308 3.99395 4.13585 4.23971 4.30312 4.31110 4.38811 4.42271 4.48819 4.52994 4.54871 4.59037 4.65420 4.71462 4.75051 4.80361 4.82177 4.88443 4.93406 4.95513 5.02537 5.04048 5.07912 5.17995 5.23129 5.24972 5.28548 5.30534 5.43225 5.51827 5.55806 5.69433 5.74919 6.15898 6.29529 6.76218 6.79518 7.35503 7.46796 8.13843 8.36014 9.30856 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023963 B = 0.001703 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.209045 B =16435.198525 C =17007.367858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.090 4.090 12 H 0.060 0.940 13 C -0.112 4.112 14 C -0.120 4.120 15 C 0.149 3.851 16 H 0.072 0.928 17 N -0.711 5.711 18 C 0.511 3.489 19 O -0.584 6.584 20 C -0.050 4.050 21 C -0.237 4.237 22 C 0.047 3.953 23 N -0.339 5.339 24 N -0.379 5.379 25 C 0.096 3.904 26 C -0.063 4.063 27 C -0.122 4.122 28 C -0.133 4.133 29 C 0.124 3.876 30 C -0.105 4.105 31 H 0.250 0.750 32 H 0.373 0.627 33 H 0.021 0.979 34 H 0.025 0.975 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.417 0.583 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.197 0.803 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.119 0.881 48 H 0.060 0.940 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.081 0.919 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.466 -30.428 -12.323 33.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.389 5.389 10 C 0.034 3.966 11 C -0.110 4.110 12 H 0.079 0.921 13 C -0.150 4.150 14 C -0.158 4.158 15 C 0.043 3.957 16 H 0.090 0.910 17 N -0.363 5.363 18 C 0.299 3.701 19 O -0.463 6.463 20 C -0.090 4.090 21 C -0.249 4.249 22 C -0.139 4.139 23 N -0.160 5.160 24 N -0.162 5.162 25 C -0.032 4.032 26 C -0.101 4.101 27 C -0.159 4.159 28 C -0.171 4.171 29 C 0.004 3.996 30 C -0.144 4.144 31 H 0.059 0.941 32 H 0.204 0.796 33 H 0.039 0.961 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.255 0.745 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.214 0.786 43 H 0.128 0.872 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.116 0.884 47 H 0.137 0.863 48 H 0.079 0.921 49 H 0.115 0.885 50 H 0.105 0.895 51 H 0.100 0.900 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.013 -31.631 -12.411 34.347 hybrid contribution 0.165 1.985 0.462 2.045 sum 5.179 -29.646 -11.949 32.380 Atomic orbital electron populations 1.69817 1.06685 1.26072 1.59647 1.25597 0.96401 1.01222 1.03894 0.85192 0.77152 0.79062 0.78239 1.20282 1.22344 1.20334 1.19639 0.91567 0.85437 1.41021 0.90496 1.42613 1.05636 1.01311 1.89319 1.20914 0.93605 0.84437 0.97631 1.21765 0.97120 0.94602 0.97466 0.92121 1.22063 0.99413 0.97187 0.96381 1.22645 1.01307 0.94012 0.97866 1.21707 0.93843 0.85796 0.94347 0.91013 1.45902 1.11015 1.12734 1.66629 1.21338 0.88887 0.83882 0.76012 1.90702 1.17443 1.82914 1.55263 1.19944 0.95875 0.88555 1.04675 1.19313 1.11039 1.00493 0.94016 1.24186 0.96225 0.92834 1.00612 1.77164 1.23113 1.24495 0.91210 1.48832 1.39741 1.17455 1.10221 1.21235 0.94694 0.89123 0.98192 1.20591 1.04291 0.96000 0.89225 1.21686 0.96716 1.00061 0.97479 1.21990 0.98833 0.97160 0.99131 1.22071 0.95875 0.97816 0.83856 1.22486 0.99693 0.91952 1.00228 0.94100 0.79577 0.96108 0.95731 0.93204 0.92828 0.90332 0.92737 0.74513 0.85803 0.85400 0.78628 0.87175 0.90518 0.90369 0.88430 0.86265 0.92150 0.88517 0.89465 0.89988 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.26 13.06 21.65 0.28 -59.97 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 3 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.75 -38.11 5.39 -343.45 -1.85 -39.96 16 10 C 0.16 6.20 5.27 86.38 0.46 6.65 16 11 C -0.09 -2.80 2.96 -10.07 -0.03 -2.83 16 12 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 13 C -0.11 -3.55 6.19 31.39 0.19 -3.35 16 14 C -0.12 -3.03 6.53 31.74 0.21 -2.83 16 15 C 0.15 3.35 3.21 46.28 0.15 3.49 16 16 H 0.07 1.97 7.63 -2.39 -0.02 1.96 16 17 N -0.71 -11.70 5.19 -436.43 -2.27 -13.96 16 18 C 0.51 10.28 7.82 87.66 0.69 10.97 16 19 O -0.58 -18.11 15.72 -3.04 -0.05 -18.16 16 20 C -0.05 -0.64 5.98 29.10 0.17 -0.46 16 21 C -0.24 -4.62 4.59 -20.22 -0.09 -4.71 16 22 C 0.05 1.02 11.97 85.25 1.02 2.04 16 23 N -0.34 -8.60 12.62 -56.80 -0.72 -9.32 16 24 N -0.38 -8.00 4.04 -334.04 -1.35 -9.35 16 25 C 0.10 1.85 6.59 41.28 0.27 2.12 16 26 C -0.06 -0.80 6.02 30.05 0.18 -0.62 16 27 C -0.12 -0.98 5.97 30.79 0.18 -0.80 16 28 C -0.13 -1.19 5.93 30.74 0.18 -1.01 16 29 C 0.12 1.65 7.28 86.46 0.63 2.28 16 30 C -0.11 -2.30 5.98 31.67 0.19 -2.11 16 31 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.37 20.46 7.55 -92.71 -0.70 19.76 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.05 1.95 7.61 -2.39 -0.02 1.93 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.42 3.89 8.54 -92.71 -0.79 3.10 16 40 H 0.12 0.88 7.89 -2.39 -0.02 0.86 16 41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 43 H 0.11 0.93 7.94 -2.38 -0.02 0.91 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 0.53 8.12 -2.39 -0.02 0.51 16 46 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 47 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.06 0.76 8.12 -2.38 -0.02 0.75 16 49 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 52 H 0.09 1.70 7.73 -2.39 -0.02 1.68 16 Total: -1.00 -80.93 415.84 1.21 -79.72 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.57 Total: 30.91 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 5.71 Total: -8.18 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -5.90 Total: -132.57 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.16 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -80.93 1.21 -79.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717873447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.212 kcal (2) G-P(sol) polarization free energy of solvation -80.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds