Wall clock time and date at job start Sat Apr 11 2020 08:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39872 * 125.90287 * 2 1 4 4 C 1.35316 * 107.92001 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.12272 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47038 * 95.02298 * 5 4 3 7 7 C 1.48646 * 111.00084 * 290.12577 * 6 5 4 8 8 C 1.54642 * 104.63364 * 201.49077 * 7 6 5 9 9 C 1.53250 * 104.67647 * 23.68066 * 8 7 6 10 10 C 1.53615 * 111.05504 * 239.01799 * 9 8 7 11 11 C 1.54706 * 101.50972 * 262.68393 * 10 9 8 12 12 N 1.46881 * 105.51455 * 335.46933 * 11 10 9 13 13 C 1.46507 * 124.37154 * 196.78826 * 12 11 10 14 14 C 1.53004 * 109.46773 * 90.00435 * 13 12 11 15 15 C 1.50695 * 109.46637 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 13 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47093 * 60.00328 * 19 17 15 21 21 H 1.48495 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47239 * 300.00048 * 19 17 15 23 23 C 1.34756 * 111.25708 * 17.06105 * 12 11 10 24 24 O 1.21278 * 125.13512 * 178.73690 * 23 12 11 25 25 C 1.48798 * 110.99973 * 174.50687 * 6 5 4 26 26 N 1.34947 * 107.74776 * 0.22423 * 4 3 2 27 27 C 1.46498 * 126.03657 * 179.77356 * 26 4 3 28 28 N 1.30842 * 125.89536 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47345 * 89.99770 * 1 2 3 30 30 H 1.08998 * 109.47484 * 210.00387 * 1 2 3 31 31 H 1.08995 * 109.46766 * 329.99977 * 1 2 3 32 32 H 1.07996 * 126.03605 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47629 * 335.02491 * 5 4 3 34 34 H 1.09000 * 109.46755 * 215.01897 * 5 4 3 35 35 H 1.08996 * 110.40741 * 82.70085 * 7 6 5 36 36 H 1.08995 * 110.40266 * 320.27930 * 7 6 5 37 37 H 1.09003 * 110.39286 * 264.88295 * 8 7 6 38 38 H 1.08998 * 110.39617 * 142.48535 * 8 7 6 39 39 H 1.08997 * 111.02055 * 144.62343 * 10 9 8 40 40 H 1.09003 * 111.01806 * 20.73748 * 10 9 8 41 41 H 1.08997 * 110.23438 * 216.46202 * 11 10 9 42 42 H 1.08995 * 110.31108 * 94.51899 * 11 10 9 43 43 H 1.09000 * 109.46860 * 330.00633 * 13 12 11 44 44 H 1.08997 * 109.47067 * 209.99984 * 13 12 11 45 45 H 1.08992 * 109.47421 * 60.00163 * 14 13 12 46 46 H 1.08997 * 109.46955 * 299.99616 * 14 13 12 47 47 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 48 48 H 1.09001 * 110.46013 * 39.48479 * 25 6 5 49 49 H 1.09008 * 110.46009 * 276.91608 * 25 6 5 50 50 H 1.08994 * 109.47341 * 89.99867 * 27 26 4 51 51 H 1.08995 * 109.47183 * 210.00043 * 27 26 4 52 52 H 1.08999 * 109.47126 * 330.00114 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7152 -0.0006 5 6 4.8351 1.5988 -0.0013 6 7 5.3035 1.7878 1.3781 7 6 4.3560 2.6327 2.1514 8 6 5.1973 3.1918 3.3223 9 6 6.6449 3.1340 2.8227 10 6 7.5121 2.2621 3.7434 11 6 8.1743 3.3300 4.6459 12 7 8.1596 4.5715 3.8611 13 6 8.9813 5.7476 4.1581 14 6 10.3163 5.6368 3.4188 15 6 11.1617 6.8462 3.7249 16 1 10.7864 7.6146 4.3845 17 6 12.4169 6.9687 3.1676 18 7 12.8761 6.0304 2.3686 19 14 13.4646 8.4682 3.5463 20 1 13.7125 8.5422 5.0086 21 1 14.7603 8.3607 2.8289 22 1 12.7536 9.6939 3.1021 23 6 7.2884 4.4913 2.8362 24 8 7.0600 5.3800 2.0431 25 6 6.5835 2.5461 1.4074 26 7 3.6087 -0.6342 -0.0060 27 6 4.7898 -1.5009 -0.0131 28 7 2.2741 -1.0599 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9924 2.1597 0.0004 33 1 4.5831 2.5664 -0.4353 34 1 5.6225 1.1299 -0.5914 35 1 3.5311 2.0295 2.5302 36 1 3.9795 3.4464 1.5315 37 1 5.0761 2.5687 4.2085 38 1 4.9108 4.2210 3.5385 39 1 8.2611 1.7144 3.1716 40 1 6.8962 1.5812 4.3310 41 1 9.1998 3.0433 4.8788 42 1 7.6012 3.4576 5.5641 43 1 9.1637 5.8016 5.2314 44 1 8.4592 6.6472 3.8324 45 1 10.1339 5.5827 2.3456 46 1 10.8384 4.7371 3.7445 47 1 13.7590 6.1169 1.9763 48 1 6.5711 3.3433 0.6641 49 1 7.4268 1.8770 1.2358 50 1 5.0859 -1.7200 1.0127 51 1 4.5546 -2.4313 -0.5299 52 1 5.6076 -0.9963 -0.5274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272717904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:11 Heat of formation + Delta-G solvation = 47.605888 kcal Electronic energy + Delta-G solvation = -30697.425905 eV Core-core repulsion = 26698.362133 eV Total energy + Delta-G solvation = -3999.063772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.54148 -40.87645 -38.07590 -36.04809 -34.53532 -33.92270 -32.84492 -31.31321 -30.15425 -29.52566 -29.16662 -27.98163 -26.13829 -25.50294 -24.92419 -23.31541 -21.84709 -21.66682 -20.59053 -20.28436 -19.46939 -18.56885 -16.84059 -16.64480 -16.46695 -15.73971 -15.66427 -15.62516 -15.12542 -14.77954 -14.46780 -14.36415 -14.20755 -13.94975 -13.74710 -13.48270 -13.37469 -13.18069 -12.87847 -12.76383 -12.64744 -12.54138 -12.43011 -12.28396 -12.12187 -12.01095 -11.66822 -11.61851 -11.48113 -11.28963 -10.95081 -10.88583 -10.75073 -10.71336 -10.63396 -10.01932 -9.89893 -9.41751 -9.32100 -9.14281 -8.81547 -8.62776 -8.39973 -8.05159 -6.05265 -4.08855 1.63092 2.32269 2.54854 2.91885 3.30827 3.35100 3.36907 3.47362 3.82505 4.23189 4.28428 4.30030 4.37386 4.43031 4.58427 4.72745 4.84868 4.87146 4.96986 5.02523 5.08063 5.14086 5.18124 5.28133 5.30806 5.31821 5.35118 5.40662 5.43942 5.54367 5.61401 5.63654 5.66856 5.69217 5.75922 5.84175 5.87386 5.91029 5.97850 6.03509 6.08321 6.43153 6.49703 6.50198 6.64160 6.77361 6.83130 6.96581 7.46606 7.56807 7.63088 7.81277 7.94092 8.30253 8.62036 8.97518 9.55243 11.06049 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.001992 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.026272 B =14054.696345 C =14259.358953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.069 3.931 3 C -0.269 4.269 4 C 0.104 3.896 5 C 0.101 3.899 6 N -0.503 5.503 7 C 0.038 3.962 8 C -0.099 4.099 9 C -0.099 4.099 10 C -0.114 4.114 11 C 0.099 3.901 12 N -0.609 5.609 13 C 0.127 3.873 14 C 0.013 3.987 15 C -0.523 4.523 16 H 0.057 0.943 17 C 0.059 3.941 18 N -0.893 5.893 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.525 3.475 24 O -0.530 6.530 25 C 0.054 3.946 26 N -0.361 5.361 27 C 0.104 3.896 28 N -0.300 5.300 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.262 0.738 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.078 0.922 51 H 0.084 0.916 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.605 -15.474 -1.386 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.299 4.299 4 C -0.025 4.025 5 C -0.028 4.028 6 N -0.228 5.228 7 C -0.090 4.090 8 C -0.137 4.137 9 C -0.103 4.103 10 C -0.151 4.151 11 C -0.025 4.025 12 N -0.342 5.342 13 C 0.007 3.993 14 C -0.025 4.025 15 C -0.562 4.562 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.310 3.690 24 O -0.407 6.407 25 C -0.074 4.074 26 N -0.143 5.143 27 C -0.037 4.037 28 N -0.123 5.123 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.038 0.962 46 H 0.035 0.965 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.096 0.904 51 H 0.103 0.897 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.263 -16.885 -1.660 26.428 hybrid contribution 0.827 2.414 -0.170 2.558 sum -19.437 -14.471 -1.830 24.301 Atomic orbital electron populations 1.20150 0.86834 1.03176 1.02796 1.22254 0.96826 0.90773 0.99755 1.21102 0.90962 0.99704 1.18119 1.20792 0.96312 0.84508 1.00886 1.20811 0.92968 0.97534 0.91505 1.65507 1.03101 1.43610 1.10558 1.23189 0.95605 0.95328 0.94891 1.22158 0.91400 1.01826 0.98322 1.21359 0.96859 0.95038 0.97052 1.22649 0.98660 0.96554 0.97272 1.22118 1.01962 0.84071 0.94310 1.48632 1.40568 1.16037 1.28926 1.21817 0.92878 0.84706 0.99896 1.19389 0.89637 0.97375 0.96071 1.21049 1.00442 1.05727 1.29006 0.92526 1.25004 0.97857 0.96423 0.94984 1.69960 1.18394 1.33450 1.31341 0.86604 0.79466 0.83194 0.78422 1.20178 1.21249 1.20139 1.20177 0.79388 0.88550 0.80865 1.90693 1.64777 1.43993 1.41258 1.22973 0.92623 0.96659 0.95100 1.48335 1.05387 1.04182 1.56351 1.21818 0.83743 0.94411 1.03719 1.77302 0.86335 1.22715 1.25981 0.90696 0.91089 0.90497 0.83885 0.91369 0.89341 0.89800 0.93110 0.90018 0.90775 0.89782 0.89239 0.90063 0.91610 0.91604 0.91154 0.96158 0.96456 0.92865 0.91897 0.89106 0.90362 0.89702 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.45 36.00 0.38 -0.13 16 2 C 0.07 0.74 7.22 -82.41 -0.59 0.14 16 3 C -0.27 -2.77 10.48 -40.01 -0.42 -3.19 16 4 C 0.10 1.07 5.98 -82.26 -0.49 0.58 16 5 C 0.10 0.95 4.99 -4.97 -0.02 0.92 16 6 N -0.50 -5.13 5.36 -231.60 -1.24 -6.38 16 7 C 0.04 0.38 5.87 -1.99 -0.01 0.37 16 8 C -0.10 -1.07 6.32 -25.74 -0.16 -1.23 16 9 C -0.10 -1.26 0.83 -155.25 -0.13 -1.39 16 10 C -0.11 -1.23 6.24 -25.51 -0.16 -1.39 16 11 C 0.10 1.28 7.36 -2.94 -0.02 1.26 16 12 N -0.61 -10.77 2.94 -172.52 -0.51 -11.27 16 13 C 0.13 2.65 5.89 -4.04 -0.02 2.63 16 14 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 16 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 19 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.52 9.38 6.64 -11.22 -0.07 9.31 16 24 O -0.53 -11.67 17.09 5.56 0.09 -11.57 16 25 C 0.05 0.65 5.65 -2.57 -0.01 0.63 16 26 N -0.36 -3.86 4.01 -63.89 -0.26 -4.12 16 27 C 0.10 0.76 11.27 59.85 0.67 1.44 16 28 N -0.30 -3.67 12.58 33.67 0.42 -3.24 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.07 0.64 7.88 -51.93 -0.41 0.23 16 34 H 0.09 0.72 7.22 -51.93 -0.37 0.35 16 35 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 36 H 0.05 0.54 7.81 -51.93 -0.41 0.13 16 37 H 0.08 0.75 7.32 -51.93 -0.38 0.37 16 38 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 39 H 0.08 0.90 7.51 -51.93 -0.39 0.51 16 40 H 0.09 0.77 7.42 -51.93 -0.39 0.38 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.55 7.93 -51.93 -0.41 1.14 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.06 0.88 7.39 -51.93 -0.38 0.49 16 49 H 0.09 1.01 7.46 -51.92 -0.39 0.62 16 50 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 52 H 0.09 0.49 7.14 -51.93 -0.37 0.12 16 LS Contribution 417.67 15.07 6.29 6.29 Total: -1.00 -35.15 417.67 -10.03 -45.17 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.92 Total: -2.11 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.64 Total: -3.29 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.85 Total: -51.05 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.15 -10.03 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272717904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.781 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds