Wall clock time and date at job start Sat Apr 11 2020 08:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39872 * 125.90287 * 2 1 4 4 C 1.35316 * 107.92001 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.12272 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47038 * 95.02298 * 5 4 3 7 7 C 1.48646 * 111.00084 * 290.12577 * 6 5 4 8 8 C 1.54642 * 104.63364 * 201.49077 * 7 6 5 9 9 C 1.53250 * 104.67647 * 23.68066 * 8 7 6 10 10 C 1.53615 * 111.05504 * 239.01799 * 9 8 7 11 11 C 1.54706 * 101.50972 * 262.68393 * 10 9 8 12 12 N 1.46881 * 105.51455 * 335.46933 * 11 10 9 13 13 C 1.46507 * 124.37154 * 196.78826 * 12 11 10 14 14 C 1.53004 * 109.46773 * 90.00435 * 13 12 11 15 15 C 1.50695 * 109.46637 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00546 * 0.27598 * 15 14 13 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47093 * 60.00328 * 19 17 15 21 21 H 1.48495 * 109.47002 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47239 * 300.00048 * 19 17 15 23 23 C 1.34756 * 111.25708 * 17.06105 * 12 11 10 24 24 O 1.21278 * 125.13512 * 178.73690 * 23 12 11 25 25 C 1.48798 * 110.99973 * 174.50687 * 6 5 4 26 26 N 1.34947 * 107.74776 * 0.22423 * 4 3 2 27 27 C 1.46498 * 126.03657 * 179.77356 * 26 4 3 28 28 N 1.30842 * 125.89536 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47345 * 89.99770 * 1 2 3 30 30 H 1.08998 * 109.47484 * 210.00387 * 1 2 3 31 31 H 1.08995 * 109.46766 * 329.99977 * 1 2 3 32 32 H 1.07996 * 126.03605 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.47629 * 335.02491 * 5 4 3 34 34 H 1.09000 * 109.46755 * 215.01897 * 5 4 3 35 35 H 1.08996 * 110.40741 * 82.70085 * 7 6 5 36 36 H 1.08995 * 110.40266 * 320.27930 * 7 6 5 37 37 H 1.09003 * 110.39286 * 264.88295 * 8 7 6 38 38 H 1.08998 * 110.39617 * 142.48535 * 8 7 6 39 39 H 1.08997 * 111.02055 * 144.62343 * 10 9 8 40 40 H 1.09003 * 111.01806 * 20.73748 * 10 9 8 41 41 H 1.08997 * 110.23438 * 216.46202 * 11 10 9 42 42 H 1.08995 * 110.31108 * 94.51899 * 11 10 9 43 43 H 1.09000 * 109.46860 * 330.00633 * 13 12 11 44 44 H 1.08997 * 109.47067 * 209.99984 * 13 12 11 45 45 H 1.08992 * 109.47421 * 60.00163 * 14 13 12 46 46 H 1.08997 * 109.46955 * 299.99616 * 14 13 12 47 47 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 48 48 H 1.09001 * 110.46013 * 39.48479 * 25 6 5 49 49 H 1.09008 * 110.46009 * 276.91608 * 25 6 5 50 50 H 1.08994 * 109.47341 * 89.99867 * 27 26 4 51 51 H 1.08995 * 109.47183 * 210.00043 * 27 26 4 52 52 H 1.08999 * 109.47126 * 330.00114 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7152 -0.0006 5 6 4.8351 1.5988 -0.0013 6 7 5.3035 1.7878 1.3781 7 6 4.3560 2.6327 2.1514 8 6 5.1973 3.1918 3.3223 9 6 6.6449 3.1340 2.8227 10 6 7.5121 2.2621 3.7434 11 6 8.1743 3.3300 4.6459 12 7 8.1596 4.5715 3.8611 13 6 8.9813 5.7476 4.1581 14 6 10.3163 5.6368 3.4188 15 6 11.1617 6.8462 3.7249 16 1 10.7864 7.6146 4.3845 17 6 12.4169 6.9687 3.1676 18 7 12.8761 6.0304 2.3686 19 14 13.4646 8.4682 3.5463 20 1 13.7125 8.5422 5.0086 21 1 14.7603 8.3607 2.8289 22 1 12.7536 9.6939 3.1021 23 6 7.2884 4.4913 2.8362 24 8 7.0600 5.3800 2.0431 25 6 6.5835 2.5461 1.4074 26 7 3.6087 -0.6342 -0.0060 27 6 4.7898 -1.5009 -0.0131 28 7 2.2741 -1.0599 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9924 2.1597 0.0004 33 1 4.5831 2.5664 -0.4353 34 1 5.6225 1.1299 -0.5914 35 1 3.5311 2.0295 2.5302 36 1 3.9795 3.4464 1.5315 37 1 5.0761 2.5687 4.2085 38 1 4.9108 4.2210 3.5385 39 1 8.2611 1.7144 3.1716 40 1 6.8962 1.5812 4.3310 41 1 9.1998 3.0433 4.8788 42 1 7.6012 3.4576 5.5641 43 1 9.1637 5.8016 5.2314 44 1 8.4592 6.6472 3.8324 45 1 10.1339 5.5827 2.3456 46 1 10.8384 4.7371 3.7445 47 1 13.7590 6.1169 1.9763 48 1 6.5711 3.3433 0.6641 49 1 7.4268 1.8770 1.2358 50 1 5.0859 -1.7200 1.0127 51 1 4.5546 -2.4313 -0.5299 52 1 5.6076 -0.9963 -0.5274 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272717904.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:09 Heat of formation + Delta-G solvation = 24.066937 kcal Electronic energy + Delta-G solvation = -30698.446630 eV Core-core repulsion = 26698.362133 eV Total energy + Delta-G solvation = -4000.084497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.36425 -41.98458 -39.16353 -37.49436 -35.90709 -35.00243 -34.29251 -32.60563 -31.01704 -30.57849 -30.19842 -29.09685 -27.23218 -26.62994 -26.10207 -24.40479 -23.52096 -22.54875 -21.64499 -21.32402 -20.32524 -19.76333 -18.68482 -17.70676 -17.30422 -17.20323 -16.76642 -16.57887 -16.46966 -16.14468 -15.69585 -15.42719 -15.17086 -14.82860 -14.64323 -14.50163 -14.43347 -14.29788 -14.23467 -13.95540 -13.78178 -13.55913 -13.48099 -13.17110 -13.09985 -12.90649 -12.86942 -12.76888 -12.60665 -12.49129 -12.46808 -12.33423 -11.98803 -11.95420 -11.72690 -11.58388 -11.47969 -11.43032 -10.69245 -10.59296 -10.10245 -9.66445 -9.56052 -9.40003 -8.24616 -6.37299 0.85490 1.38504 1.42478 1.49600 1.53465 1.65813 1.79259 2.12962 2.40555 2.89629 3.08831 3.31813 3.35222 3.42619 3.65592 3.71784 3.90859 4.00958 4.03131 4.24208 4.27893 4.30629 4.36377 4.37884 4.47210 4.47877 4.55180 4.61424 4.64740 4.70123 4.72236 4.73788 4.76618 4.83209 4.84938 4.87129 4.93433 4.97253 5.05033 5.07311 5.10382 5.18850 5.28379 5.32515 5.45744 5.58217 5.61848 5.78857 5.80669 5.81791 6.12672 6.14307 6.28903 6.77648 6.80717 7.19444 7.32412 8.87165 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.001992 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.026272 B =14054.696345 C =14259.358953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.060 3.940 3 C -0.280 4.280 4 C 0.100 3.900 5 C 0.104 3.896 6 N -0.492 5.492 7 C 0.041 3.959 8 C -0.093 4.093 9 C -0.091 4.091 10 C -0.101 4.101 11 C 0.092 3.908 12 N -0.617 5.617 13 C 0.141 3.859 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.066 0.934 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.970 3.030 20 H -0.260 1.260 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.511 3.489 24 O -0.584 6.584 25 C 0.057 3.943 26 N -0.367 5.367 27 C 0.097 3.903 28 N -0.333 5.333 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.110 0.890 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.051 0.949 45 H -0.027 1.027 46 H 0.002 0.998 47 H 0.264 0.736 48 H 0.036 0.964 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.091 0.909 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.232 -16.397 0.277 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.310 4.310 4 C -0.029 4.029 5 C -0.026 4.026 6 N -0.216 5.216 7 C -0.087 4.087 8 C -0.132 4.132 9 C -0.095 4.095 10 C -0.138 4.138 11 C -0.030 4.030 12 N -0.349 5.349 13 C 0.019 3.981 14 C -0.013 4.013 15 C -0.585 4.585 16 H 0.084 0.916 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.299 3.701 24 O -0.465 6.465 25 C -0.071 4.071 26 N -0.149 5.149 27 C -0.043 4.043 28 N -0.157 5.157 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.171 0.829 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.070 0.930 45 H -0.008 1.008 46 H 0.020 0.980 47 H 0.073 0.927 48 H 0.054 0.946 49 H 0.120 0.880 50 H 0.102 0.898 51 H 0.110 0.890 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.904 -17.854 0.035 27.491 hybrid contribution 1.017 2.689 -0.731 2.967 sum -19.887 -15.165 -0.696 25.019 Atomic orbital electron populations 1.20261 0.84813 1.04037 1.03706 1.22798 0.98290 0.90474 0.98891 1.21346 0.91137 1.00255 1.18307 1.20897 0.96517 0.84657 1.00806 1.20820 0.93164 0.97444 0.91146 1.65533 1.02296 1.42657 1.11085 1.23175 0.95693 0.95194 0.94601 1.22191 0.89724 1.01727 0.99511 1.21335 0.98004 0.91928 0.98269 1.22715 0.98540 0.95940 0.96616 1.22470 1.02800 0.82429 0.95291 1.48745 1.39718 1.16711 1.29694 1.21368 0.90565 0.85819 1.00321 1.19190 0.92158 0.96272 0.93641 1.21521 1.01109 1.06599 1.29245 0.91588 1.26012 0.99396 0.99752 0.94603 1.70101 1.18949 1.35652 1.32386 0.85436 0.77350 0.78843 0.79029 1.18423 1.20816 1.19591 1.21149 0.79151 0.90018 0.79789 1.90647 1.66505 1.46298 1.43053 1.22912 0.94032 0.96198 0.93951 1.48604 1.05630 1.04568 1.56054 1.22051 0.83215 0.94613 1.04416 1.77254 0.87267 1.23829 1.27376 0.89690 0.90913 0.88923 0.82926 0.91626 0.88075 0.88814 0.93985 0.87150 0.92155 0.89535 0.85498 0.90320 0.88522 0.89126 0.93031 1.00848 0.97965 0.92683 0.94608 0.88040 0.89824 0.89031 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.45 71.23 0.74 -0.15 16 2 C 0.06 1.22 7.22 43.10 0.31 1.53 16 3 C -0.28 -5.48 10.48 21.99 0.23 -5.25 16 4 C 0.10 1.95 5.98 41.41 0.25 2.20 16 5 C 0.10 1.83 4.99 85.56 0.43 2.25 16 6 N -0.49 -9.21 5.36 -886.63 -4.75 -13.96 16 7 C 0.04 0.77 5.87 86.52 0.51 1.28 16 8 C -0.09 -1.83 6.32 31.24 0.20 -1.63 16 9 C -0.09 -2.21 0.83 -52.66 -0.04 -2.26 16 10 C -0.10 -1.88 6.24 31.38 0.20 -1.68 16 11 C 0.09 2.18 7.36 86.89 0.64 2.82 16 12 N -0.62 -21.83 2.94 -818.15 -2.41 -24.24 16 13 C 0.14 6.01 5.89 86.38 0.51 6.51 16 14 C 0.03 1.37 5.30 29.85 0.16 1.53 16 15 C -0.55 -31.28 9.11 25.60 0.23 -31.05 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 17 C 0.00 0.04 5.46 84.66 0.46 0.50 16 18 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 19 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 20 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.51 18.66 6.64 87.51 0.58 19.24 16 24 O -0.58 -27.16 17.09 -3.02 -0.05 -27.21 16 25 C 0.06 1.33 5.65 86.06 0.49 1.81 16 26 N -0.37 -7.39 4.01 -356.05 -1.43 -8.82 16 27 C 0.10 1.27 11.27 127.77 1.44 2.71 16 28 N -0.33 -7.86 12.58 -47.39 -0.60 -8.46 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.07 1.21 7.88 -2.39 -0.02 1.19 16 34 H 0.10 1.51 7.22 -2.39 -0.02 1.50 16 35 H 0.09 1.63 8.13 -2.39 -0.02 1.61 16 36 H 0.04 0.87 7.81 -2.39 -0.02 0.85 16 37 H 0.11 1.56 7.32 -2.39 -0.02 1.54 16 38 H 0.06 1.37 7.75 -2.39 -0.02 1.36 16 39 H 0.09 1.61 7.51 -2.39 -0.02 1.59 16 40 H 0.13 1.51 7.42 -2.39 -0.02 1.49 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.05 2.37 7.93 -2.39 -0.02 2.35 16 45 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 46 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 47 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 48 H 0.04 1.03 7.39 -2.39 -0.02 1.02 16 49 H 0.10 2.13 7.46 -2.38 -0.02 2.11 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.10 0.97 7.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.78 417.67 1.29 -78.48 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.89 Total: 14.35 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 7.33 Total: 0.37 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -8.90 Total: -112.33 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -79.78 1.29 -78.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272717904.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.551 kcal (2) G-P(sol) polarization free energy of solvation -79.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds