Wall clock time and date at job start Sat Apr 11 2020 08:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39870 * 125.89830 * 2 1 4 4 C 1.35312 * 107.91940 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.12751 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47463 * 264.57786 * 5 4 3 7 7 C 1.47911 * 110.99586 * 58.80529 * 6 5 4 8 8 C 1.54087 * 107.02506 * 145.70981 * 7 6 5 9 9 C 1.54159 * 105.00424 * 358.27890 * 8 7 6 10 10 H 1.09001 * 110.03805 * 96.17683 * 9 8 7 11 11 C 1.48755 * 111.00391 * 176.32704 * 6 5 4 12 12 H 1.09008 * 112.55584 * 80.39537 * 11 6 5 13 13 C 1.53121 * 107.93636 * 316.84480 * 11 6 5 14 14 C 1.52904 * 109.29106 * 184.02978 * 13 11 6 15 15 C 1.50330 * 109.35053 * 52.63829 * 14 13 11 16 16 O 1.21290 * 118.76746 * 158.46285 * 15 14 13 17 17 N 1.33351 * 122.46683 * 338.44430 * 15 14 13 18 18 C 1.46506 * 117.33817 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47373 * 89.99654 * 18 17 15 20 20 C 1.50693 * 109.47250 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.37884 * 120.00233 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99611 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00399 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46826 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46897 * 120.00085 * 24 22 20 27 27 H 1.48497 * 109.47225 * 240.00650 * 24 22 20 28 28 N 1.34944 * 107.74862 * 0.23219 * 4 3 2 29 29 C 1.46500 * 126.03924 * 179.76662 * 28 4 3 30 30 N 1.30838 * 125.89763 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47465 * 89.99356 * 1 2 3 32 32 H 1.09007 * 109.47118 * 209.99107 * 1 2 3 33 33 H 1.08997 * 109.47186 * 329.99294 * 1 2 3 34 34 H 1.08004 * 126.03706 * 359.95611 * 3 2 1 35 35 H 1.08997 * 109.47528 * 144.57770 * 5 4 3 36 36 H 1.09005 * 109.47472 * 24.57650 * 5 4 3 37 37 H 1.08996 * 109.92648 * 26.36862 * 7 6 5 38 38 H 1.09000 * 110.09034 * 265.14086 * 7 6 5 39 39 H 1.09001 * 110.33458 * 239.39839 * 8 7 6 40 40 H 1.08997 * 110.42843 * 117.20688 * 8 7 6 41 41 H 1.08993 * 109.50151 * 303.97472 * 13 11 6 42 42 H 1.09004 * 109.50096 * 64.08843 * 13 11 6 43 43 H 1.08997 * 109.49056 * 172.60272 * 14 13 11 44 44 H 1.08998 * 109.49292 * 292.65589 * 14 13 11 45 45 H 1.08999 * 109.46695 * 209.99799 * 18 17 15 46 46 H 1.08994 * 109.47146 * 329.99512 * 18 17 15 47 47 H 1.09004 * 109.47334 * 300.00227 * 19 18 17 48 48 H 1.09002 * 109.47321 * 60.00094 * 19 18 17 49 49 H 0.97004 * 120.00081 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.46894 * 84.80322 * 29 28 4 51 51 H 1.09003 * 109.47448 * 204.79797 * 29 28 4 52 52 H 1.09001 * 109.47386 * 324.79874 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0002 6 7 5.3088 1.7790 -1.3786 7 6 4.2573 2.3829 -2.2256 8 6 4.9674 3.2937 -3.2456 9 6 6.4647 3.1979 -2.8916 10 1 6.9511 2.4547 -3.5235 11 6 6.4616 2.7179 -1.4278 12 1 7.4031 2.2384 -1.1596 13 6 6.1482 3.8983 -0.5043 14 6 7.2695 4.9326 -0.6083 15 6 7.4925 5.2820 -2.0533 16 8 8.0338 6.3334 -2.3228 17 7 7.1178 4.4791 -3.0499 18 6 7.3897 4.9313 -4.4167 19 6 8.7711 4.4380 -4.8519 20 6 9.0505 4.9026 -6.2579 21 1 8.3164 5.4913 -6.7880 22 6 10.2437 4.5770 -6.8673 23 7 11.1378 3.8605 -6.2216 24 14 10.5898 5.1523 -8.6104 25 1 9.4324 5.9360 -9.1120 26 1 11.8052 6.0053 -8.6180 27 1 10.8069 3.9734 -9.4869 28 7 3.6087 -0.6341 -0.0043 29 6 4.7899 -1.5007 -0.0103 30 7 2.2741 -1.0599 0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8901 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.9922 2.1598 -0.0007 35 1 5.6202 1.1339 0.5963 36 1 4.5813 2.5693 0.4269 37 1 3.5781 2.9730 -1.6105 38 1 3.7028 1.6027 -2.7473 39 1 4.6188 4.3213 -3.1428 40 1 4.7945 2.9356 -4.2605 41 1 5.2042 4.3538 -0.8035 42 1 6.0728 3.5456 0.5243 43 1 6.9891 5.8297 -0.0563 44 1 8.1862 4.5187 -0.1882 45 1 6.6319 4.5301 -5.0896 46 1 7.3657 6.0205 -4.4506 47 1 9.5289 4.8392 -4.1789 48 1 8.7951 3.3487 -4.8180 49 1 11.9774 3.6317 -6.6501 50 1 5.1404 -1.6443 1.0118 51 1 4.5299 -2.4663 -0.4442 52 1 5.5782 -1.0365 -0.6030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272718660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:14 Heat of formation + Delta-G solvation = 51.576864 kcal Electronic energy + Delta-G solvation = -31420.110371 eV Core-core repulsion = 27421.218793 eV Total energy + Delta-G solvation = -3998.891577 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67664 -40.88001 -38.57525 -35.50823 -34.29205 -33.71283 -32.93921 -32.15852 -30.30003 -29.62121 -29.10070 -28.07116 -25.96043 -25.44010 -25.11985 -23.81301 -21.77201 -21.56984 -20.71480 -20.29702 -19.23481 -18.06089 -16.96580 -16.77147 -16.40723 -16.37497 -15.85284 -15.50345 -15.14726 -14.67018 -14.61633 -14.38687 -14.31411 -13.93193 -13.76347 -13.53006 -13.39820 -13.20182 -12.85126 -12.81654 -12.54955 -12.51587 -12.36255 -12.28715 -12.04004 -11.96728 -11.81166 -11.54705 -11.45296 -11.20318 -11.05310 -10.93329 -10.74813 -10.71949 -10.61330 -9.86857 -9.84784 -9.35698 -9.33214 -9.03148 -8.76286 -8.63435 -8.35006 -8.07188 -6.00397 -4.02866 1.59135 2.30918 2.51903 3.05966 3.30768 3.31866 3.39483 3.43829 3.80262 4.15157 4.27431 4.29741 4.47054 4.53790 4.57923 4.66731 4.79822 4.90766 4.95776 4.98166 5.01478 5.06277 5.10607 5.15323 5.25049 5.29596 5.34607 5.35208 5.36454 5.42365 5.57398 5.59765 5.63432 5.65547 5.73625 5.77064 5.88532 5.94193 6.02863 6.08730 6.18354 6.47140 6.47391 6.54535 6.59517 6.80728 6.85402 6.90426 7.54737 7.63399 7.74515 8.00224 8.04275 8.37564 8.64810 9.03838 9.60816 11.11176 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002426 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.058181 B =11539.134248 C =12151.400265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.069 3.931 3 C -0.268 4.268 4 C 0.098 3.902 5 C 0.102 3.898 6 N -0.506 5.506 7 C 0.045 3.955 8 C -0.144 4.144 9 C 0.150 3.850 10 H 0.098 0.902 11 C 0.062 3.938 12 H 0.110 0.890 13 C -0.151 4.151 14 C -0.132 4.132 15 C 0.510 3.490 16 O -0.546 6.546 17 N -0.589 5.589 18 C 0.109 3.891 19 C 0.016 3.984 20 C -0.518 4.518 21 H 0.056 0.944 22 C 0.058 3.942 23 N -0.894 5.894 24 Si 0.893 3.107 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 N -0.360 5.360 29 C 0.099 3.901 30 N -0.298 5.298 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.021 0.979 48 H 0.015 0.985 49 H 0.260 0.740 50 H 0.071 0.929 51 H 0.088 0.912 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.437 -8.592 17.127 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 C -0.298 4.298 4 C -0.031 4.031 5 C -0.028 4.028 6 N -0.230 5.230 7 C -0.083 4.083 8 C -0.184 4.184 9 C 0.044 3.956 10 H 0.116 0.884 11 C -0.046 4.046 12 H 0.128 0.872 13 C -0.189 4.189 14 C -0.172 4.172 15 C 0.297 3.703 16 O -0.424 6.424 17 N -0.320 5.320 18 C -0.012 4.012 19 C -0.022 4.022 20 C -0.557 4.557 21 H 0.075 0.925 22 C -0.143 4.143 23 N -0.533 5.533 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 N -0.141 5.141 29 C -0.043 4.043 30 N -0.122 5.122 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.040 0.960 48 H 0.033 0.967 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.107 0.893 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.679 -10.032 16.801 26.372 hybrid contribution 0.144 1.725 -0.646 1.848 sum -17.535 -8.307 16.154 25.248 Atomic orbital electron populations 1.20158 0.86836 1.03093 1.02919 1.22257 0.96848 0.90765 0.99768 1.21092 0.90958 0.99643 1.18110 1.20829 0.96314 0.84617 1.01294 1.20922 0.92856 0.97411 0.91579 1.64836 1.06069 1.44065 1.07984 1.22813 0.93687 0.97032 0.94777 1.22854 0.95177 1.00182 1.00158 1.21205 0.92606 0.86114 0.95697 0.88415 1.22995 0.95463 0.91280 0.94895 0.87170 1.22247 0.99433 0.96517 1.00750 1.21580 1.00395 1.00693 0.94554 1.19956 0.78823 0.84018 0.87479 1.90744 1.42701 1.24457 1.84463 1.47153 1.57976 1.18425 1.08486 1.21932 1.00114 1.00446 0.78688 1.19335 0.90341 0.96252 0.96301 1.21127 1.02102 1.33526 0.98919 0.92533 1.24999 0.96166 0.95153 0.98026 1.69983 1.07859 1.38214 1.37224 0.86513 0.78314 0.78456 0.84585 1.19687 1.20990 1.21032 1.48356 1.05403 1.04177 1.56179 1.21910 0.84189 0.95078 1.03078 1.77321 0.86390 1.22725 1.25724 0.90588 0.91105 0.90552 0.83946 0.89206 0.90917 0.93149 0.90179 0.90756 0.90071 0.90970 0.90358 0.88499 0.88422 0.91975 0.90623 0.96036 0.96714 0.93061 0.91063 0.89322 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.01 0.38 -0.12 16 2 C 0.07 0.71 7.22 -82.41 -0.59 0.12 16 3 C -0.27 -2.56 9.85 -40.01 -0.39 -2.95 16 4 C 0.10 0.93 5.69 -82.27 -0.47 0.46 16 5 C 0.10 0.79 4.07 -4.98 -0.02 0.76 16 6 N -0.51 -4.68 5.33 -224.29 -1.20 -5.88 16 7 C 0.04 0.43 4.93 -2.70 -0.01 0.42 16 8 C -0.14 -1.64 5.74 -25.56 -0.15 -1.78 16 9 C 0.15 2.01 3.12 -67.75 -0.21 1.80 16 10 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 11 C 0.06 0.64 3.45 -66.07 -0.23 0.41 16 12 H 0.11 1.13 8.14 -51.92 -0.42 0.70 16 13 C -0.15 -1.37 3.92 -26.72 -0.10 -1.47 16 14 C -0.13 -1.56 6.07 -28.11 -0.17 -1.73 16 15 C 0.51 8.96 7.47 -11.80 -0.09 8.88 16 16 O -0.55 -12.30 16.21 5.55 0.09 -12.21 16 17 N -0.59 -10.08 2.45 -166.67 -0.41 -10.49 16 18 C 0.11 2.29 5.01 -4.04 -0.02 2.27 16 19 C 0.02 0.41 5.28 -27.89 -0.15 0.26 16 20 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 21 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 24 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 N -0.36 -3.72 4.01 -63.89 -0.26 -3.98 16 29 C 0.10 0.72 11.11 59.85 0.67 1.38 16 30 N -0.30 -3.58 12.58 33.67 0.42 -3.16 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.09 0.60 8.01 -51.93 -0.42 0.18 16 36 H 0.07 0.50 5.94 -51.93 -0.31 0.19 16 37 H 0.05 0.44 7.04 -51.93 -0.37 0.08 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.68 6.91 -51.93 -0.36 0.32 16 42 H 0.08 0.53 6.46 -51.93 -0.34 0.20 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 46 H 0.08 1.73 7.14 -51.93 -0.37 1.35 16 47 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.10 0.65 7.94 -51.93 -0.41 0.24 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -35.54 407.84 -10.31 -45.85 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.85 Total: -1.95 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.98 Total: -4.81 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.70 Total: -49.89 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.54 -10.31 -45.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272718660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.427 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds