Wall clock time and date at job start Sat Apr 11 2020 08:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39870 * 125.89830 * 2 1 4 4 C 1.35312 * 107.91940 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.12751 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47463 * 264.57786 * 5 4 3 7 7 C 1.47911 * 110.99586 * 58.80529 * 6 5 4 8 8 C 1.54087 * 107.02506 * 145.70981 * 7 6 5 9 9 C 1.54159 * 105.00424 * 358.27890 * 8 7 6 10 10 H 1.09001 * 110.03805 * 96.17683 * 9 8 7 11 11 C 1.48755 * 111.00391 * 176.32704 * 6 5 4 12 12 H 1.09008 * 112.55584 * 80.39537 * 11 6 5 13 13 C 1.53121 * 107.93636 * 316.84480 * 11 6 5 14 14 C 1.52904 * 109.29106 * 184.02978 * 13 11 6 15 15 C 1.50330 * 109.35053 * 52.63829 * 14 13 11 16 16 O 1.21290 * 118.76746 * 158.46285 * 15 14 13 17 17 N 1.33351 * 122.46683 * 338.44430 * 15 14 13 18 18 C 1.46506 * 117.33817 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47373 * 89.99654 * 18 17 15 20 20 C 1.50693 * 109.47250 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00027 * 0.02562 * 20 19 18 22 22 C 1.37884 * 120.00233 * 179.97438 * 20 19 18 23 23 N 1.31518 * 119.99611 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00399 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46826 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46897 * 120.00085 * 24 22 20 27 27 H 1.48497 * 109.47225 * 240.00650 * 24 22 20 28 28 N 1.34944 * 107.74862 * 0.23219 * 4 3 2 29 29 C 1.46500 * 126.03924 * 179.76662 * 28 4 3 30 30 N 1.30838 * 125.89763 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.47465 * 89.99356 * 1 2 3 32 32 H 1.09007 * 109.47118 * 209.99107 * 1 2 3 33 33 H 1.08997 * 109.47186 * 329.99294 * 1 2 3 34 34 H 1.08004 * 126.03706 * 359.95611 * 3 2 1 35 35 H 1.08997 * 109.47528 * 144.57770 * 5 4 3 36 36 H 1.09005 * 109.47472 * 24.57650 * 5 4 3 37 37 H 1.08996 * 109.92648 * 26.36862 * 7 6 5 38 38 H 1.09000 * 110.09034 * 265.14086 * 7 6 5 39 39 H 1.09001 * 110.33458 * 239.39839 * 8 7 6 40 40 H 1.08997 * 110.42843 * 117.20688 * 8 7 6 41 41 H 1.08993 * 109.50151 * 303.97472 * 13 11 6 42 42 H 1.09004 * 109.50096 * 64.08843 * 13 11 6 43 43 H 1.08997 * 109.49056 * 172.60272 * 14 13 11 44 44 H 1.08998 * 109.49292 * 292.65589 * 14 13 11 45 45 H 1.08999 * 109.46695 * 209.99799 * 18 17 15 46 46 H 1.08994 * 109.47146 * 329.99512 * 18 17 15 47 47 H 1.09004 * 109.47334 * 300.00227 * 19 18 17 48 48 H 1.09002 * 109.47321 * 60.00094 * 19 18 17 49 49 H 0.97004 * 120.00081 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.46894 * 84.80322 * 29 28 4 51 51 H 1.09003 * 109.47448 * 204.79797 * 29 28 4 52 52 H 1.09001 * 109.47386 * 324.79874 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0006 5 6 4.8350 1.5989 0.0002 6 7 5.3088 1.7790 -1.3786 7 6 4.2573 2.3829 -2.2256 8 6 4.9674 3.2937 -3.2456 9 6 6.4647 3.1979 -2.8916 10 1 6.9511 2.4547 -3.5235 11 6 6.4616 2.7179 -1.4278 12 1 7.4031 2.2384 -1.1596 13 6 6.1482 3.8983 -0.5043 14 6 7.2695 4.9326 -0.6083 15 6 7.4925 5.2820 -2.0533 16 8 8.0338 6.3334 -2.3228 17 7 7.1178 4.4791 -3.0499 18 6 7.3897 4.9313 -4.4167 19 6 8.7711 4.4380 -4.8519 20 6 9.0505 4.9026 -6.2579 21 1 8.3164 5.4913 -6.7880 22 6 10.2437 4.5770 -6.8673 23 7 11.1378 3.8605 -6.2216 24 14 10.5898 5.1523 -8.6104 25 1 9.4324 5.9360 -9.1120 26 1 11.8052 6.0053 -8.6180 27 1 10.8069 3.9734 -9.4869 28 7 3.6087 -0.6341 -0.0043 29 6 4.7899 -1.5007 -0.0103 30 7 2.2741 -1.0599 0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8901 0.5137 33 1 -0.3633 0.8899 0.5139 34 1 1.9922 2.1598 -0.0007 35 1 5.6202 1.1339 0.5963 36 1 4.5813 2.5693 0.4269 37 1 3.5781 2.9730 -1.6105 38 1 3.7028 1.6027 -2.7473 39 1 4.6188 4.3213 -3.1428 40 1 4.7945 2.9356 -4.2605 41 1 5.2042 4.3538 -0.8035 42 1 6.0728 3.5456 0.5243 43 1 6.9891 5.8297 -0.0563 44 1 8.1862 4.5187 -0.1882 45 1 6.6319 4.5301 -5.0896 46 1 7.3657 6.0205 -4.4506 47 1 9.5289 4.8392 -4.1789 48 1 8.7951 3.3487 -4.8180 49 1 11.9774 3.6317 -6.6501 50 1 5.1404 -1.6443 1.0118 51 1 4.5299 -2.4663 -0.4442 52 1 5.5782 -1.0365 -0.6030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272718660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:13 Heat of formation + Delta-G solvation = 27.379406 kcal Electronic energy + Delta-G solvation = -31421.159651 eV Core-core repulsion = 27421.218793 eV Total energy + Delta-G solvation = -3999.940858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.45941 -41.89900 -39.76385 -36.93961 -35.45657 -34.79447 -34.35423 -33.23412 -31.54566 -30.59962 -30.08164 -29.06812 -26.96104 -26.66381 -26.05138 -25.01006 -23.34957 -22.67144 -21.71225 -21.16625 -19.93096 -19.23693 -18.63801 -17.93156 -17.58969 -17.19082 -17.16155 -16.64189 -16.28097 -16.15194 -15.59265 -15.47945 -15.15537 -14.95532 -14.67562 -14.53474 -14.28678 -14.25562 -14.14440 -13.85478 -13.62420 -13.48802 -13.45312 -13.09952 -13.05925 -12.89551 -12.84116 -12.72212 -12.68777 -12.56422 -12.45554 -12.25628 -11.95088 -11.87907 -11.75040 -11.64938 -11.43323 -11.38338 -10.60573 -10.56040 -10.06091 -9.61783 -9.44453 -9.33114 -8.24123 -6.35984 0.89794 1.37505 1.39017 1.52049 1.68106 1.70207 1.82476 2.06980 2.39988 2.95943 3.09366 3.35603 3.42829 3.63770 3.70861 3.75811 3.80379 4.07225 4.11398 4.14728 4.22568 4.33888 4.37634 4.44182 4.44697 4.47410 4.52845 4.61443 4.65979 4.73383 4.75148 4.79525 4.84762 4.85409 4.86334 4.89980 4.92544 4.97711 5.02360 5.07081 5.11949 5.24126 5.28071 5.33826 5.47264 5.57570 5.70785 5.80383 5.83239 5.91538 6.16636 6.18390 6.63331 6.79346 6.85317 7.25276 7.33302 8.88278 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.002426 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.058181 B =11539.134248 C =12151.400265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.057 3.943 3 C -0.277 4.277 4 C 0.095 3.905 5 C 0.104 3.896 6 N -0.508 5.508 7 C 0.056 3.944 8 C -0.137 4.137 9 C 0.139 3.861 10 H 0.074 0.926 11 C 0.072 3.928 12 H 0.114 0.886 13 C -0.140 4.140 14 C -0.120 4.120 15 C 0.497 3.503 16 O -0.606 6.606 17 N -0.587 5.587 18 C 0.126 3.874 19 C 0.029 3.971 20 C -0.542 4.542 21 H 0.062 0.938 22 C 0.000 4.000 23 N -0.932 5.932 24 Si 0.969 3.031 25 H -0.260 1.260 26 H -0.280 1.280 27 H -0.273 1.273 28 N -0.369 5.369 29 C 0.094 3.906 30 N -0.339 5.339 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.160 0.840 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.054 0.946 47 H -0.024 1.024 48 H -0.003 1.003 49 H 0.264 0.736 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.963 -8.663 18.267 28.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C -0.307 4.307 4 C -0.034 4.034 5 C -0.025 4.025 6 N -0.232 5.232 7 C -0.072 4.072 8 C -0.176 4.176 9 C 0.034 3.966 10 H 0.092 0.908 11 C -0.037 4.037 12 H 0.132 0.868 13 C -0.179 4.179 14 C -0.160 4.160 15 C 0.288 3.712 16 O -0.488 6.488 17 N -0.316 5.316 18 C 0.003 3.997 19 C -0.009 4.009 20 C -0.581 4.581 21 H 0.081 0.919 22 C -0.198 4.198 23 N -0.572 5.572 24 Si 0.793 3.207 25 H -0.184 1.184 26 H -0.206 1.206 27 H -0.199 1.199 28 N -0.151 5.151 29 C -0.046 4.046 30 N -0.163 5.163 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.177 0.823 35 H 0.125 0.875 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.098 0.902 46 H 0.073 0.927 47 H -0.006 1.006 48 H 0.016 0.984 49 H 0.073 0.927 50 H 0.106 0.894 51 H 0.105 0.895 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -19.243 -10.148 17.963 28.213 hybrid contribution 0.642 1.700 -1.005 2.076 sum -18.601 -8.448 16.959 26.551 Atomic orbital electron populations 1.20257 0.85091 1.03992 1.03542 1.22811 0.98214 0.90786 0.99014 1.21381 0.90971 1.00269 1.18065 1.21130 0.96977 0.84510 1.00762 1.21039 0.92732 0.98116 0.90564 1.64808 1.05630 1.43568 1.09228 1.22698 0.93617 0.96465 0.94456 1.22765 0.93570 1.00679 1.00631 1.21404 0.93320 0.83622 0.98259 0.90802 1.22888 0.96201 0.92054 0.92527 0.86813 1.22251 0.98218 0.94863 1.02546 1.21590 1.02289 1.02443 0.89703 1.21152 0.77236 0.82992 0.89836 1.90711 1.45315 1.27098 1.85678 1.47160 1.57879 1.19726 1.06833 1.21422 0.97580 0.99052 0.81663 1.19114 0.92098 0.94736 0.94905 1.21567 1.02701 1.33773 1.00013 0.91941 1.26001 0.95850 0.95048 1.02894 1.70116 1.08425 1.39280 1.39365 0.85346 0.78358 0.78289 0.78741 1.18423 1.20631 1.19859 1.48617 1.05441 1.04918 1.56115 1.22073 0.83514 0.94774 1.04273 1.77269 0.87488 1.24120 1.27420 0.90013 0.91180 0.88683 0.82272 0.87498 0.89006 0.91428 0.91001 0.90763 0.90694 0.90503 0.86447 0.86906 0.87044 0.90214 0.92718 1.00570 0.98449 0.92716 0.89358 0.89548 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.45 71.24 0.74 -0.12 16 2 C 0.06 1.08 7.22 43.10 0.31 1.39 16 3 C -0.28 -4.57 9.85 21.99 0.22 -4.36 16 4 C 0.10 1.54 5.69 41.40 0.24 1.78 16 5 C 0.10 1.20 4.07 85.56 0.35 1.54 16 6 N -0.51 -7.96 5.33 -863.52 -4.60 -12.56 16 7 C 0.06 0.93 4.93 86.48 0.43 1.36 16 8 C -0.14 -2.95 5.74 31.35 0.18 -2.77 16 9 C 0.14 3.67 3.12 46.08 0.14 3.81 16 10 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 11 C 0.07 1.30 3.45 44.95 0.15 1.45 16 12 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 13 C -0.14 -2.00 3.92 30.60 0.12 -1.88 16 14 C -0.12 -2.56 6.07 29.70 0.18 -2.38 16 15 C 0.50 17.64 7.47 87.76 0.66 18.30 16 16 O -0.61 -28.42 16.21 -3.06 -0.05 -28.47 16 17 N -0.59 -20.47 2.45 -800.40 -1.96 -22.43 16 18 C 0.13 5.51 5.01 86.38 0.43 5.94 16 19 C 0.03 1.63 5.28 29.85 0.16 1.78 16 20 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 21 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 22 C 0.00 0.00 5.46 84.66 0.46 0.46 16 23 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 24 Si 0.97 45.30 29.54 68.60 2.03 47.32 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 N -0.37 -7.02 4.01 -356.03 -1.43 -8.45 16 29 C 0.09 1.22 11.11 127.77 1.42 2.64 16 30 N -0.34 -7.83 12.58 -47.38 -0.60 -8.42 16 31 H 0.08 0.89 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.11 0.93 8.01 -2.39 -0.02 0.91 16 36 H 0.09 0.76 5.94 -2.38 -0.01 0.75 16 37 H 0.07 0.94 7.04 -2.39 -0.02 0.92 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 40 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.08 1.10 6.91 -2.39 -0.02 1.08 16 42 H 0.12 0.90 6.46 -2.38 -0.02 0.88 16 43 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.08 3.16 7.72 -2.39 -0.02 3.14 16 46 H 0.05 2.62 7.14 -2.39 -0.02 2.61 16 47 H -0.02 -1.54 8.14 -2.38 -0.02 -1.56 16 48 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 49 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 50 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.10 1.18 7.94 -2.39 -0.02 1.17 16 Total: -1.00 -81.85 407.84 0.99 -80.85 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.90 Total: 12.64 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 6.42 Total: -2.66 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -8.30 Total: -109.68 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.47 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -81.85 0.99 -80.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272718660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.233 kcal (2) G-P(sol) polarization free energy of solvation -81.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds