Wall clock time and date at job start Sat Apr 11 2020 08:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12652 * 2 1 4 4 C 1.39873 * 107.92307 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.90023 * 179.97438 * 4 3 2 6 6 N 1.46906 * 109.46945 * 95.00061 * 5 4 3 7 7 C 1.48724 * 110.99745 * 60.85193 * 6 5 4 8 8 C 1.55004 * 103.34962 * 158.81876 * 7 6 5 9 9 C 1.54807 * 102.94355 * 323.04297 * 8 7 6 10 10 C 1.47076 * 110.99659 * 178.00489 * 6 5 4 11 11 C 1.53873 * 110.68694 * 336.03676 * 10 6 5 12 12 C 1.54643 * 101.58479 * 96.22487 * 11 10 6 13 13 N 1.46858 * 105.50231 * 24.75733 * 12 11 10 14 14 C 1.46499 * 124.36644 * 163.39959 * 13 12 11 15 15 C 1.53001 * 109.46936 * 269.72373 * 14 13 12 16 16 C 1.50697 * 109.47382 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99946 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00321 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00129 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99861 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47197 * 89.99873 * 20 18 16 22 22 H 1.48502 * 109.47290 * 209.99986 * 20 18 16 23 23 H 1.48499 * 109.47257 * 329.99930 * 20 18 16 24 24 C 1.34668 * 111.26473 * 343.13010 * 13 12 11 25 25 O 1.21277 * 125.08218 * 180.82799 * 24 13 12 26 26 N 1.30833 * 108.19652 * 0.26120 * 4 3 2 27 27 N 1.34948 * 126.12773 * 179.97438 * 2 1 3 28 28 C 1.46496 * 126.03782 * 0.04403 * 27 2 1 29 29 H 1.09000 * 109.46485 * 90.02988 * 1 2 3 30 30 H 1.08996 * 109.47187 * 210.02239 * 1 2 3 31 31 H 1.09002 * 109.47500 * 330.02873 * 1 2 3 32 32 H 1.08004 * 126.04023 * 359.93875 * 3 2 1 33 33 H 1.09001 * 109.47318 * 335.00384 * 5 4 3 34 34 H 1.09004 * 109.47077 * 214.99846 * 5 4 3 35 35 H 1.09002 * 110.64700 * 40.35495 * 7 6 5 36 36 H 1.08996 * 110.78758 * 277.34546 * 7 6 5 37 37 H 1.09006 * 110.71963 * 204.68159 * 8 7 6 38 38 H 1.08998 * 110.72612 * 81.40729 * 8 7 6 39 39 H 1.09000 * 110.36894 * 263.05570 * 9 8 7 40 40 H 1.09000 * 110.36891 * 140.72572 * 9 8 7 41 41 H 1.08997 * 111.00577 * 214.30310 * 11 10 6 42 42 H 1.09004 * 111.00201 * 338.11282 * 11 10 6 43 43 H 1.08999 * 110.24397 * 265.75227 * 12 11 10 44 44 H 1.09000 * 110.24075 * 143.76011 * 12 11 10 45 45 H 1.09003 * 109.47199 * 29.72024 * 14 13 12 46 46 H 1.08996 * 109.47333 * 149.72189 * 14 13 12 47 47 H 1.09003 * 109.46891 * 299.99839 * 15 14 13 48 48 H 1.08996 * 109.47260 * 59.99771 * 15 14 13 49 49 H 0.96996 * 119.99751 * 180.02562 * 19 18 16 50 50 H 1.09006 * 109.46863 * 89.99820 * 28 27 2 51 51 H 1.09003 * 109.47259 * 209.99368 * 28 27 2 52 52 H 1.08995 * 109.47006 * 329.99979 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6560 0.0006 5 6 4.8543 1.5396 0.0003 6 7 5.3214 1.7298 1.3800 7 6 5.6941 0.4305 2.0004 8 6 6.6380 0.8444 3.1582 9 6 7.4250 2.0337 2.5557 10 6 6.5417 2.5501 1.4149 11 6 7.2897 2.4690 0.0726 12 6 6.7750 3.7375 -0.6468 13 7 6.3668 4.6571 0.4230 14 6 6.1447 6.0934 0.2389 15 6 7.4514 6.8480 0.4919 16 6 7.2229 8.3255 0.3031 17 1 6.2435 8.6900 0.0304 18 6 8.2638 9.2123 0.4796 19 7 8.0643 10.5018 0.3154 20 14 9.9576 8.5820 0.9521 21 1 10.7393 8.2939 -0.2773 22 1 10.6624 9.6121 1.7567 23 1 9.8178 7.3390 1.7524 24 6 6.2173 4.0086 1.5938 25 8 5.8729 4.5233 2.6366 26 7 3.6334 -0.6523 -0.0047 27 7 2.3026 -1.0900 0.0005 28 6 1.8540 -2.4845 0.0002 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 1.9740 2.1211 -0.0009 33 1 4.6026 2.5068 -0.4347 34 1 5.6424 1.0702 -0.5887 35 1 6.2192 -0.2010 1.2837 36 1 4.8126 -0.0804 2.3874 37 1 7.3118 0.0277 3.4171 38 1 6.0642 1.1631 4.0284 39 1 8.3860 1.6953 2.1682 40 1 7.5698 2.8115 3.3054 41 1 8.3682 2.5155 0.2229 42 1 7.0122 1.5686 -0.4755 43 1 5.9219 3.4924 -1.2793 44 1 7.5718 4.1825 -1.2428 45 1 5.8083 6.2812 -0.7808 46 1 5.3851 6.4366 0.9411 47 1 7.7878 6.6601 1.5116 48 1 8.2110 6.5048 -0.2103 49 1 8.7967 11.1255 0.4392 50 1 1.7433 -2.8304 -1.0276 51 1 2.5896 -3.1030 0.5144 52 1 0.8952 -2.5578 0.5134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272882159.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:29 Heat of formation + Delta-G solvation = 67.967308 kcal Electronic energy + Delta-G solvation = -31522.536596 eV Core-core repulsion = 27524.355762 eV Total energy + Delta-G solvation = -3998.180834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.65990 -41.02742 -37.88609 -35.95113 -34.44144 -33.56878 -32.24851 -32.09895 -31.75986 -29.46125 -28.02573 -27.65888 -27.22300 -25.44655 -24.85679 -23.54132 -21.64649 -21.42488 -20.44054 -20.20751 -19.34774 -18.57362 -17.05780 -16.95581 -16.77060 -16.01655 -15.77997 -15.38397 -15.05648 -14.68859 -14.52946 -14.31190 -14.07362 -13.81084 -13.59994 -13.47887 -13.40463 -12.99032 -12.93219 -12.81673 -12.78359 -12.65761 -12.62621 -12.41667 -12.35200 -11.98306 -11.85265 -11.58761 -11.28939 -11.14675 -10.97569 -10.95951 -10.68723 -10.57104 -10.41450 -9.99699 -9.87067 -9.50144 -9.34960 -9.21321 -8.66267 -8.53235 -8.38263 -8.09081 -6.04012 -4.02621 1.61133 2.23369 2.49289 2.97724 3.31331 3.39656 3.44456 3.45858 4.04002 4.16062 4.28095 4.33783 4.43426 4.46713 4.59492 4.67675 4.70740 4.77479 4.84469 4.85441 4.99540 5.01442 5.09541 5.12070 5.16168 5.30374 5.32826 5.44615 5.46986 5.51170 5.57861 5.63703 5.73089 5.76269 5.80294 5.81565 5.89618 5.95665 5.98945 6.07610 6.18846 6.37019 6.45341 6.64222 6.70896 6.77681 6.80167 6.92585 7.20994 7.39733 7.53479 7.69125 7.78698 8.50437 8.69104 8.99495 9.58124 11.09110 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.002611 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.048910 B =10721.044443 C =11596.878664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.077 3.923 3 C -0.251 4.251 4 C 0.087 3.913 5 C 0.115 3.885 6 N -0.482 5.482 7 C 0.045 3.955 8 C -0.121 4.121 9 C -0.112 4.112 10 C 0.066 3.934 11 C -0.168 4.168 12 C 0.100 3.900 13 N -0.615 5.615 14 C 0.138 3.862 15 C -0.024 4.024 16 C -0.520 4.520 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.901 5.901 20 Si 0.879 3.121 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.265 1.265 24 C 0.538 3.462 25 O -0.516 6.516 26 N -0.293 5.293 27 N -0.375 5.375 28 C 0.102 3.898 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.020 0.980 48 H 0.012 0.988 49 H 0.263 0.737 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 -29.797 -2.687 31.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.050 4.050 3 C -0.281 4.281 4 C -0.079 4.079 5 C -0.014 4.014 6 N -0.207 5.207 7 C -0.083 4.083 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.028 4.028 11 C -0.206 4.206 12 C -0.024 4.024 13 N -0.349 5.349 14 C 0.018 3.982 15 C -0.063 4.063 16 C -0.558 4.558 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.540 5.540 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.190 1.190 24 C 0.322 3.678 25 O -0.390 6.390 26 N -0.116 5.116 27 N -0.159 5.159 28 C -0.039 4.039 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.095 0.905 47 H 0.039 0.961 48 H 0.030 0.970 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.106 0.894 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.622 -30.186 -1.865 32.055 hybrid contribution 1.046 0.141 -0.421 1.136 sum -9.577 -30.045 -2.286 31.617 Atomic orbital electron populations 1.20441 0.87384 1.03836 1.03229 1.21062 0.94617 0.87265 1.02051 1.21153 0.91595 0.99188 1.16120 1.21957 0.95465 0.91168 0.99295 1.20954 0.91792 0.98001 0.90616 1.64570 1.27315 1.12415 1.16412 1.23230 0.98757 0.90430 0.95837 1.22539 0.97762 0.97258 0.98394 1.22306 0.97249 0.98723 0.96769 1.21953 0.90584 0.93999 0.96248 1.23376 1.01660 0.99002 0.96589 1.22119 0.99945 0.89509 0.90811 1.48596 1.67734 1.09353 1.09202 1.21567 1.00117 0.75056 1.01441 1.19895 0.93210 0.96241 0.96913 1.20967 0.98350 0.88874 1.47617 0.90784 1.24976 0.98912 0.94712 0.94626 1.69907 1.32505 1.01628 1.49953 0.86777 0.84510 0.79086 0.78952 1.20339 1.21299 1.19011 1.20012 0.76829 0.87395 0.83530 1.90680 1.46528 1.72820 1.28978 1.77284 0.96343 1.12335 1.25620 1.48365 1.03816 1.05825 1.57853 1.21793 1.00901 0.78087 1.03143 0.90262 0.91333 0.89480 0.83481 0.88219 0.91787 0.93184 0.90129 0.90880 0.90450 0.90578 0.89697 0.89176 0.88512 0.91306 0.90003 0.91033 0.90462 0.96140 0.96990 0.92684 0.90950 0.89394 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.12 36.01 0.36 -0.14 16 2 C 0.08 0.73 6.93 -82.26 -0.57 0.16 16 3 C -0.25 -2.91 10.65 -40.01 -0.43 -3.34 16 4 C 0.09 1.07 5.96 -82.41 -0.49 0.58 16 5 C 0.12 1.35 4.25 -4.97 -0.02 1.33 16 6 N -0.48 -6.41 5.01 -218.19 -1.09 -7.50 16 7 C 0.04 0.52 5.53 -1.75 -0.01 0.51 16 8 C -0.12 -1.34 7.07 -24.72 -0.17 -1.52 16 9 C -0.11 -1.42 6.19 -25.65 -0.16 -1.58 16 10 C 0.07 0.91 0.81 -132.18 -0.11 0.81 16 11 C -0.17 -1.87 5.67 -25.41 -0.14 -2.01 16 12 C 0.10 1.29 6.66 -2.98 -0.02 1.27 16 13 N -0.61 -10.87 2.94 -172.50 -0.51 -11.37 16 14 C 0.14 2.86 5.88 -4.04 -0.02 2.84 16 15 C -0.02 -0.60 4.36 -27.88 -0.12 -0.72 16 16 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 17 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 18 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 20 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 24 C 0.54 10.05 7.05 -11.13 -0.08 9.97 16 25 O -0.52 -11.86 17.13 5.56 0.10 -11.77 16 26 N -0.29 -3.55 12.15 33.67 0.41 -3.14 16 27 N -0.38 -3.68 4.01 -63.89 -0.26 -3.94 16 28 C 0.10 0.54 11.27 59.84 0.67 1.22 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.27 7.08 -51.93 -0.37 -0.10 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.10 1.20 6.19 -51.93 -0.32 0.87 16 34 H 0.06 0.66 5.44 -51.93 -0.28 0.38 16 35 H 0.05 0.54 7.97 -51.93 -0.41 0.12 16 36 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.80 7.38 -51.93 -0.38 0.42 16 40 H 0.08 1.27 7.43 -51.93 -0.39 0.88 16 41 H 0.09 0.94 7.55 -51.93 -0.39 0.55 16 42 H 0.10 0.88 5.30 -51.93 -0.27 0.61 16 43 H 0.07 0.75 6.42 -51.93 -0.33 0.42 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.08 1.73 7.93 -51.93 -0.41 1.31 16 47 H 0.02 0.54 7.20 -51.93 -0.37 0.17 16 48 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 50 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 51 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.08 0.26 7.05 -51.93 -0.37 -0.11 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -36.90 404.91 -9.39 -46.29 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.50 Total: -0.97 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.74 Total: -4.01 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.67 Total: -53.25 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.10 Total: -11.77 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.90 -9.39 -46.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272882159.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.253 kcal (2) G-P(sol) polarization free energy of solvation -36.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds