Wall clock time and date at job start Sat Apr 11 2020 08:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30844 * 125.89928 * 2 1 4 4 N 1.40088 * 108.20137 * 180.25706 * 3 2 1 5 5 C 1.46504 * 126.03461 * 179.69969 * 4 3 2 6 6 C 1.34946 * 107.92574 * 359.71441 * 4 3 2 7 7 C 1.35308 * 107.74877 * 0.02562 * 6 4 3 8 8 C 1.50701 * 126.04063 * 180.02562 * 7 6 4 9 9 N 1.46905 * 109.47089 * 260.02019 * 8 7 6 10 10 C 1.47657 * 110.99559 * 49.43721 * 9 8 7 11 11 C 1.54523 * 107.05715 * 123.12161 * 10 9 8 12 12 C 1.54838 * 102.59520 * 22.98691 * 11 10 9 13 13 H 1.09000 * 111.04928 * 80.45181 * 12 11 10 14 14 C 1.48268 * 110.99817 * 169.99849 * 9 8 7 15 15 H 1.09004 * 111.35495 * 91.92825 * 14 9 8 16 16 C 1.53121 * 108.11533 * 329.41693 * 14 9 8 17 17 C 1.52889 * 109.32988 * 182.70162 * 16 14 9 18 18 C 1.50341 * 109.31071 * 52.85314 * 17 16 14 19 19 O 1.21283 * 118.80380 * 158.34063 * 18 17 16 20 20 N 1.33354 * 122.39753 * 338.35594 * 18 17 16 21 21 C 1.46497 * 117.28978 * 179.47632 * 20 18 17 22 22 C 1.53002 * 109.47013 * 90.00371 * 21 20 18 23 23 C 1.50696 * 109.47119 * 180.02562 * 22 21 20 24 24 H 1.07997 * 120.00485 * 359.97438 * 23 22 21 25 25 C 1.37877 * 119.99994 * 180.02562 * 23 22 21 26 26 N 1.31519 * 120.00199 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00065 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47352 * 90.00525 * 27 25 23 29 29 H 1.48504 * 109.47466 * 210.00724 * 27 25 23 30 30 H 1.48506 * 109.47031 * 330.00357 * 27 25 23 31 31 H 1.08999 * 109.47382 * 270.21884 * 1 2 3 32 32 H 1.09002 * 109.47306 * 30.21492 * 1 2 3 33 33 H 1.08994 * 109.47543 * 150.21382 * 1 2 3 34 34 H 1.09006 * 109.46442 * 270.02261 * 5 4 3 35 35 H 1.08997 * 109.47407 * 30.01705 * 5 4 3 36 36 H 1.08995 * 109.47164 * 150.02827 * 5 4 3 37 37 H 1.08004 * 126.12333 * 180.02562 * 6 4 3 38 38 H 1.09003 * 109.46942 * 140.02302 * 8 7 6 39 39 H 1.09001 * 109.47398 * 20.02528 * 8 7 6 40 40 H 1.09006 * 109.91588 * 242.47336 * 10 9 8 41 41 H 1.09000 * 109.92302 * 3.56842 * 10 9 8 42 42 H 1.09000 * 110.78381 * 141.26636 * 11 10 9 43 43 H 1.08991 * 110.78442 * 264.72062 * 11 10 9 44 44 H 1.08997 * 109.49822 * 62.74859 * 16 14 9 45 45 H 1.08995 * 109.51838 * 302.67136 * 16 14 9 46 46 H 1.09000 * 109.50242 * 292.89687 * 17 16 14 47 47 H 1.09007 * 109.52612 * 172.81614 * 17 16 14 48 48 H 1.08993 * 109.47200 * 210.00339 * 21 20 18 49 49 H 1.09004 * 109.47469 * 330.00329 * 21 20 18 50 50 H 1.09002 * 109.46867 * 299.99976 * 22 21 20 51 51 H 1.08998 * 109.47325 * 59.99977 * 22 21 20 52 52 H 0.96999 * 119.99798 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6340 -0.0060 5 6 4.7899 1.5007 -0.0142 6 6 3.6141 -0.7154 -0.0031 7 6 2.3271 -1.1330 0.0038 8 6 1.8598 -2.5657 0.0096 9 7 1.4736 -2.9603 -1.3518 10 6 2.5257 -2.6039 -2.3245 11 6 2.9316 -3.9060 -3.0507 12 6 1.6828 -4.8016 -2.8612 13 1 0.9057 -4.5476 -3.5821 14 6 1.2372 -4.4217 -1.4345 15 1 0.1900 -4.6652 -1.2547 16 6 2.1500 -5.1100 -0.4158 17 6 1.9776 -6.6253 -0.5245 18 6 2.1749 -7.0468 -1.9541 19 8 2.4716 -8.1993 -2.1878 20 7 2.0359 -6.1996 -2.9745 21 6 2.2659 -6.7272 -4.3217 22 6 0.9503 -7.2614 -4.8916 23 6 1.1869 -7.8047 -6.2772 24 1 2.1765 -7.7719 -6.7084 25 6 0.1398 -8.3427 -6.9948 26 7 0.3464 -8.8173 -8.2039 27 14 -1.5721 -8.3988 -6.2494 28 1 -2.3028 -7.1526 -6.5932 29 1 -2.3090 -9.5696 -6.7892 30 1 -1.4654 -8.5188 -4.7731 31 1 -0.3634 0.0039 1.0276 32 1 -0.3634 0.8881 -0.5172 33 1 -0.3634 -0.8918 -0.5105 34 1 5.0771 1.7135 -1.0440 35 1 4.5592 2.4343 0.4989 36 1 5.6121 0.9991 0.4961 37 1 4.4890 -1.3486 -0.0059 38 1 1.0015 -2.6653 0.6740 39 1 2.6667 -3.2097 0.3594 40 1 2.1374 -1.8830 -3.0440 41 1 3.3855 -2.1822 -1.8039 42 1 3.1156 -3.7178 -4.1084 43 1 3.8051 -4.3558 -2.5790 44 1 1.8833 -4.7849 0.5898 45 1 3.1877 -4.8464 -0.6201 46 1 0.9749 -6.9017 -0.1987 47 1 2.7149 -7.1220 0.1063 48 1 2.6436 -5.9317 -4.9638 49 1 2.9965 -7.5348 -4.2758 50 1 0.5726 -8.0570 -4.2494 51 1 0.2197 -6.4538 -4.9375 52 1 -0.3902 -9.1962 -8.7086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273019436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:59 Heat of formation + Delta-G solvation = 61.260284 kcal Electronic energy + Delta-G solvation = -31575.597942 eV Core-core repulsion = 27577.126270 eV Total energy + Delta-G solvation = -3998.471673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74048 -40.89526 -38.59466 -35.56405 -34.42210 -33.67396 -32.89585 -32.04457 -30.49815 -29.83264 -29.21402 -28.04799 -26.43226 -25.34393 -24.51269 -23.66200 -21.69383 -21.40668 -20.98698 -20.24929 -19.36604 -18.09723 -17.14055 -16.90178 -16.61186 -16.12867 -16.00917 -15.60928 -15.18198 -14.68944 -14.59338 -14.36999 -14.28563 -13.78830 -13.73847 -13.53339 -13.45301 -13.28055 -12.97702 -12.75740 -12.62368 -12.55977 -12.40021 -12.27286 -12.14915 -12.00371 -11.80118 -11.53577 -11.39882 -11.32597 -10.98104 -10.91772 -10.78318 -10.68112 -10.32048 -9.97850 -9.78924 -9.46172 -9.33771 -9.10768 -8.69769 -8.50888 -8.38583 -8.17615 -6.01996 -4.00122 1.56622 2.19991 2.42342 2.99814 3.32364 3.33434 3.41205 3.47339 3.91284 4.14219 4.37074 4.42967 4.44121 4.48712 4.65008 4.69409 4.71653 4.74648 4.92926 4.97529 4.98291 5.02331 5.11637 5.15804 5.20261 5.27376 5.32575 5.40655 5.46862 5.50938 5.59838 5.66041 5.70968 5.75359 5.77880 5.80278 5.84922 5.86587 6.05318 6.10424 6.14543 6.41257 6.43668 6.67281 6.68684 6.71869 6.77488 6.88473 7.27878 7.42260 7.47162 7.79587 7.95285 8.52378 8.58898 9.01513 9.60376 11.11259 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002583 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.028719 B =10835.583570 C =11225.243685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.097 3.903 3 N -0.302 5.302 4 N -0.378 5.378 5 C 0.103 3.897 6 C 0.059 3.941 7 C -0.230 4.230 8 C 0.121 3.879 9 N -0.513 5.513 10 C 0.047 3.953 11 C -0.155 4.155 12 C 0.143 3.857 13 H 0.100 0.900 14 C 0.066 3.934 15 H 0.105 0.895 16 C -0.147 4.147 17 C -0.133 4.133 18 C 0.509 3.491 19 O -0.545 6.545 20 N -0.592 5.592 21 C 0.118 3.882 22 C -0.020 4.020 23 C -0.517 4.517 24 H 0.073 0.927 25 C 0.069 3.931 26 N -0.903 5.903 27 Si 0.880 3.120 28 H -0.277 1.277 29 H -0.288 1.288 30 H -0.266 1.266 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.169 0.831 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.081 0.919 50 H 0.021 0.979 51 H 0.010 0.990 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.559 20.982 21.928 31.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 N -0.125 5.125 4 N -0.159 5.159 5 C -0.038 4.038 6 C -0.088 4.088 7 C -0.242 4.242 8 C -0.007 4.007 9 N -0.237 5.237 10 C -0.081 4.081 11 C -0.195 4.195 12 C 0.038 3.962 13 H 0.118 0.882 14 C -0.043 4.043 15 H 0.123 0.877 16 C -0.186 4.186 17 C -0.174 4.174 18 C 0.297 3.703 19 O -0.423 6.423 20 N -0.323 5.323 21 C -0.003 4.003 22 C -0.059 4.059 23 C -0.556 4.556 24 H 0.091 0.909 25 C -0.133 4.133 26 N -0.542 5.542 27 Si 0.707 3.293 28 H -0.203 1.203 29 H -0.214 1.214 30 H -0.190 1.190 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.186 0.814 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.039 0.961 51 H 0.028 0.972 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.359 21.968 21.568 31.436 hybrid contribution 0.019 -1.223 0.354 1.274 sum 6.378 20.745 21.922 30.848 Atomic orbital electron populations 1.20222 0.86499 1.03999 1.02658 1.22244 0.96983 0.89887 0.97857 1.77349 0.86261 1.22854 1.26029 1.48333 1.05660 1.04599 1.57344 1.21836 0.83597 0.94994 1.03407 1.22322 0.99110 0.85076 1.02294 1.19830 0.91523 0.96046 1.16806 1.20663 0.99689 0.89734 0.90642 1.64027 1.41664 1.12908 1.05104 1.22836 0.93634 0.96786 0.94833 1.23264 0.98275 0.95810 1.02143 1.21576 0.96791 0.80810 0.97073 0.88192 1.22876 1.00276 0.87152 0.93948 0.87665 1.22268 1.00736 0.94904 1.00655 1.21611 1.04824 0.96455 0.94501 1.20025 0.77439 0.85599 0.87246 1.90748 1.47986 1.18314 1.85285 1.47145 1.67739 1.08899 1.08508 1.21706 1.00602 0.98698 0.79311 1.19820 0.93016 0.96045 0.96990 1.20966 0.97282 1.39436 0.97885 0.90932 1.24978 0.98990 0.94678 0.94629 1.69911 1.32237 1.41009 1.10999 0.86773 0.84636 0.77663 0.80216 1.20291 1.21358 1.19037 0.90906 0.91223 0.89191 0.90743 0.89369 0.89599 0.81372 0.89856 0.93046 0.90483 0.92336 0.89998 0.91149 0.90055 0.91219 0.88460 0.88525 0.91430 0.90104 0.96060 0.97175 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.26 36.00 0.37 -0.23 16 2 C 0.10 0.98 7.22 -82.41 -0.59 0.38 16 3 N -0.30 -3.37 12.58 33.67 0.42 -2.95 16 4 N -0.38 -3.25 4.01 -68.16 -0.27 -3.53 16 5 C 0.10 0.47 11.47 59.85 0.69 1.15 16 6 C 0.06 0.46 9.82 -17.23 -0.17 0.29 16 7 C -0.23 -2.03 4.46 -105.05 -0.47 -2.50 16 8 C 0.12 0.95 4.20 -4.97 -0.02 0.93 16 9 N -0.51 -4.80 5.30 -224.51 -1.19 -5.99 16 10 C 0.05 0.45 6.18 -2.61 -0.02 0.44 16 11 C -0.16 -1.72 5.79 -24.96 -0.14 -1.86 16 12 C 0.14 1.87 3.16 -67.32 -0.21 1.66 16 13 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.07 0.68 3.53 -66.26 -0.23 0.44 16 15 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 16 C -0.15 -1.33 3.73 -26.73 -0.10 -1.42 16 17 C -0.13 -1.54 6.08 -28.11 -0.17 -1.71 16 18 C 0.51 8.73 7.47 -11.79 -0.09 8.64 16 19 O -0.55 -12.02 16.21 5.56 0.09 -11.93 16 20 N -0.59 -9.86 2.48 -166.18 -0.41 -10.27 16 21 C 0.12 2.42 5.02 -4.04 -0.02 2.40 16 22 C -0.02 -0.51 4.35 -27.88 -0.12 -0.63 16 23 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 24 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 25 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 26 N -0.90 -28.28 13.96 55.43 0.77 -27.50 16 27 Si 0.88 22.40 27.47 -169.99 -4.67 17.74 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.27 -6.67 6.54 56.52 0.37 -6.30 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.71 7.96 -51.93 -0.41 0.30 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.17 0.85 8.04 -52.48 -0.42 0.43 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.37 5.48 -51.93 -0.28 0.08 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.51 5.39 -51.93 -0.28 0.23 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.78 7.38 -51.93 -0.38 0.40 16 44 H 0.08 0.57 6.54 -51.93 -0.34 0.23 16 45 H 0.07 0.64 6.52 -51.93 -0.34 0.30 16 46 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 49 H 0.08 1.83 7.15 -51.93 -0.37 1.46 16 50 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 51 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 52 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 401.64 15.07 6.05 6.05 Total: -1.00 -36.48 401.64 -9.60 -46.09 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -8.66 Total: -2.27 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.73 Total: -5.44 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.68 Total: -50.24 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.48 -9.60 -46.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273019436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.347 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds