Wall clock time and date at job start Sat Apr 11 2020 08:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30844 * 125.89928 * 2 1 4 4 N 1.40088 * 108.20137 * 180.25706 * 3 2 1 5 5 C 1.46504 * 126.03461 * 179.69969 * 4 3 2 6 6 C 1.34946 * 107.92574 * 359.71441 * 4 3 2 7 7 C 1.35308 * 107.74877 * 0.02562 * 6 4 3 8 8 C 1.50701 * 126.04063 * 180.02562 * 7 6 4 9 9 N 1.46905 * 109.47089 * 260.02019 * 8 7 6 10 10 C 1.47657 * 110.99559 * 49.43721 * 9 8 7 11 11 C 1.54523 * 107.05715 * 123.12161 * 10 9 8 12 12 C 1.54838 * 102.59520 * 22.98691 * 11 10 9 13 13 H 1.09000 * 111.04928 * 80.45181 * 12 11 10 14 14 C 1.48268 * 110.99817 * 169.99849 * 9 8 7 15 15 H 1.09004 * 111.35495 * 91.92825 * 14 9 8 16 16 C 1.53121 * 108.11533 * 329.41693 * 14 9 8 17 17 C 1.52889 * 109.32988 * 182.70162 * 16 14 9 18 18 C 1.50341 * 109.31071 * 52.85314 * 17 16 14 19 19 O 1.21283 * 118.80380 * 158.34063 * 18 17 16 20 20 N 1.33354 * 122.39753 * 338.35594 * 18 17 16 21 21 C 1.46497 * 117.28978 * 179.47632 * 20 18 17 22 22 C 1.53002 * 109.47013 * 90.00371 * 21 20 18 23 23 C 1.50696 * 109.47119 * 180.02562 * 22 21 20 24 24 H 1.07997 * 120.00485 * 359.97438 * 23 22 21 25 25 C 1.37877 * 119.99994 * 180.02562 * 23 22 21 26 26 N 1.31519 * 120.00199 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 120.00065 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47352 * 90.00525 * 27 25 23 29 29 H 1.48504 * 109.47466 * 210.00724 * 27 25 23 30 30 H 1.48506 * 109.47031 * 330.00357 * 27 25 23 31 31 H 1.08999 * 109.47382 * 270.21884 * 1 2 3 32 32 H 1.09002 * 109.47306 * 30.21492 * 1 2 3 33 33 H 1.08994 * 109.47543 * 150.21382 * 1 2 3 34 34 H 1.09006 * 109.46442 * 270.02261 * 5 4 3 35 35 H 1.08997 * 109.47407 * 30.01705 * 5 4 3 36 36 H 1.08995 * 109.47164 * 150.02827 * 5 4 3 37 37 H 1.08004 * 126.12333 * 180.02562 * 6 4 3 38 38 H 1.09003 * 109.46942 * 140.02302 * 8 7 6 39 39 H 1.09001 * 109.47398 * 20.02528 * 8 7 6 40 40 H 1.09006 * 109.91588 * 242.47336 * 10 9 8 41 41 H 1.09000 * 109.92302 * 3.56842 * 10 9 8 42 42 H 1.09000 * 110.78381 * 141.26636 * 11 10 9 43 43 H 1.08991 * 110.78442 * 264.72062 * 11 10 9 44 44 H 1.08997 * 109.49822 * 62.74859 * 16 14 9 45 45 H 1.08995 * 109.51838 * 302.67136 * 16 14 9 46 46 H 1.09000 * 109.50242 * 292.89687 * 17 16 14 47 47 H 1.09007 * 109.52612 * 172.81614 * 17 16 14 48 48 H 1.08993 * 109.47200 * 210.00339 * 21 20 18 49 49 H 1.09004 * 109.47469 * 330.00329 * 21 20 18 50 50 H 1.09002 * 109.46867 * 299.99976 * 22 21 20 51 51 H 1.08998 * 109.47325 * 59.99977 * 22 21 20 52 52 H 0.96999 * 119.99798 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6340 -0.0060 5 6 4.7899 1.5007 -0.0142 6 6 3.6141 -0.7154 -0.0031 7 6 2.3271 -1.1330 0.0038 8 6 1.8598 -2.5657 0.0096 9 7 1.4736 -2.9603 -1.3518 10 6 2.5257 -2.6039 -2.3245 11 6 2.9316 -3.9060 -3.0507 12 6 1.6828 -4.8016 -2.8612 13 1 0.9057 -4.5476 -3.5821 14 6 1.2372 -4.4217 -1.4345 15 1 0.1900 -4.6652 -1.2547 16 6 2.1500 -5.1100 -0.4158 17 6 1.9776 -6.6253 -0.5245 18 6 2.1749 -7.0468 -1.9541 19 8 2.4716 -8.1993 -2.1878 20 7 2.0359 -6.1996 -2.9745 21 6 2.2659 -6.7272 -4.3217 22 6 0.9503 -7.2614 -4.8916 23 6 1.1869 -7.8047 -6.2772 24 1 2.1765 -7.7719 -6.7084 25 6 0.1398 -8.3427 -6.9948 26 7 0.3464 -8.8173 -8.2039 27 14 -1.5721 -8.3988 -6.2494 28 1 -2.3028 -7.1526 -6.5932 29 1 -2.3090 -9.5696 -6.7892 30 1 -1.4654 -8.5188 -4.7731 31 1 -0.3634 0.0039 1.0276 32 1 -0.3634 0.8881 -0.5172 33 1 -0.3634 -0.8918 -0.5105 34 1 5.0771 1.7135 -1.0440 35 1 4.5592 2.4343 0.4989 36 1 5.6121 0.9991 0.4961 37 1 4.4890 -1.3486 -0.0059 38 1 1.0015 -2.6653 0.6740 39 1 2.6667 -3.2097 0.3594 40 1 2.1374 -1.8830 -3.0440 41 1 3.3855 -2.1822 -1.8039 42 1 3.1156 -3.7178 -4.1084 43 1 3.8051 -4.3558 -2.5790 44 1 1.8833 -4.7849 0.5898 45 1 3.1877 -4.8464 -0.6201 46 1 0.9749 -6.9017 -0.1987 47 1 2.7149 -7.1220 0.1063 48 1 2.6436 -5.9317 -4.9638 49 1 2.9965 -7.5348 -4.2758 50 1 0.5726 -8.0570 -4.2494 51 1 0.2197 -6.4538 -4.9375 52 1 -0.3902 -9.1962 -8.7086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273019436.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:06:58 Heat of formation + Delta-G solvation = 35.731045 kcal Electronic energy + Delta-G solvation = -31576.704973 eV Core-core repulsion = 27577.126270 eV Total energy + Delta-G solvation = -3999.578704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.44313 -41.87405 -39.72689 -36.94032 -35.45584 -34.76472 -34.36087 -33.13866 -31.81309 -30.73635 -30.02149 -28.97393 -27.08118 -27.01847 -25.20224 -24.73384 -23.05307 -22.57923 -21.80309 -21.25588 -20.03543 -19.39233 -18.82946 -17.89862 -17.69029 -17.18745 -16.84019 -16.54524 -16.34225 -16.08135 -15.71160 -15.27134 -15.12551 -14.90659 -14.81762 -14.75883 -14.46990 -14.23119 -14.11143 -13.83005 -13.65427 -13.58261 -13.24049 -13.02418 -12.93025 -12.84649 -12.79474 -12.77026 -12.64528 -12.54182 -12.21226 -12.06127 -11.95368 -11.83172 -11.74985 -11.53083 -11.51359 -11.32252 -10.80105 -10.55074 -10.09109 -9.63784 -9.30245 -9.05398 -8.33371 -6.37790 0.99265 1.30463 1.34223 1.46166 1.67970 1.73253 1.76719 2.08879 2.32676 3.01519 3.12190 3.44638 3.58084 3.66038 3.73856 3.88012 3.96087 4.13642 4.20086 4.26192 4.28680 4.33479 4.37970 4.42629 4.44850 4.45452 4.54118 4.58553 4.62939 4.70837 4.79977 4.83067 4.84007 4.87329 4.91548 4.92745 4.96498 5.03828 5.09934 5.17510 5.21650 5.23912 5.27995 5.34763 5.35604 5.48778 5.66042 5.82572 6.02706 6.15400 6.21025 6.24251 6.62445 6.68368 6.85853 7.23623 7.27706 8.83138 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002583 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.028719 B =10835.583570 C =11225.243685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.081 3.919 3 N -0.344 5.344 4 N -0.383 5.383 5 C 0.095 3.905 6 C 0.063 3.937 7 C -0.244 4.244 8 C 0.124 3.876 9 N -0.516 5.516 10 C 0.058 3.942 11 C -0.148 4.148 12 C 0.131 3.869 13 H 0.085 0.915 14 C 0.074 3.926 15 H 0.110 0.890 16 C -0.137 4.137 17 C -0.122 4.122 18 C 0.499 3.501 19 O -0.605 6.605 20 N -0.587 5.587 21 C 0.130 3.870 22 C -0.009 4.009 23 C -0.531 4.531 24 H 0.036 0.964 25 C 0.008 3.992 26 N -0.946 5.946 27 Si 0.950 3.050 28 H -0.257 1.257 29 H -0.281 1.281 30 H -0.260 1.260 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.199 0.801 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.001 0.999 51 H 0.023 0.977 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.123 22.540 24.993 34.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 N -0.168 5.168 4 N -0.164 5.164 5 C -0.045 4.045 6 C -0.084 4.084 7 C -0.256 4.256 8 C -0.003 4.003 9 N -0.239 5.239 10 C -0.070 4.070 11 C -0.187 4.187 12 C 0.026 3.974 13 H 0.103 0.897 14 C -0.034 4.034 15 H 0.128 0.872 16 C -0.175 4.175 17 C -0.162 4.162 18 C 0.289 3.711 19 O -0.487 6.487 20 N -0.316 5.316 21 C 0.007 3.993 22 C -0.047 4.047 23 C -0.569 4.569 24 H 0.055 0.945 25 C -0.189 4.189 26 N -0.587 5.587 27 Si 0.773 3.227 28 H -0.181 1.181 29 H -0.207 1.207 30 H -0.185 1.185 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.216 0.784 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.134 0.866 45 H 0.092 0.908 46 H 0.132 0.868 47 H 0.129 0.871 48 H 0.097 0.903 49 H 0.071 0.929 50 H 0.019 0.981 51 H 0.041 0.959 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.925 23.594 24.654 34.636 hybrid contribution 0.275 -1.672 -0.673 1.824 sum 6.201 21.922 23.981 33.077 Atomic orbital electron populations 1.20226 0.85840 1.03689 1.03301 1.22590 0.97748 0.90335 0.97768 1.77281 0.87781 1.24094 1.27673 1.48660 1.05616 1.05474 1.56657 1.22126 0.83125 0.95034 1.04248 1.22825 0.99855 0.85057 1.00689 1.19969 0.91780 0.96129 1.17704 1.20713 1.00632 0.89402 0.89586 1.64033 1.41772 1.12032 1.06104 1.22709 0.94156 0.95459 0.94686 1.23186 0.97421 0.96131 1.02008 1.21819 0.97557 0.78750 0.99247 0.89665 1.22804 1.00818 0.87814 0.91994 0.87208 1.22272 1.00681 0.92578 1.02016 1.21627 1.06158 0.98430 0.89949 1.21171 0.75820 0.84670 0.89425 1.90722 1.50617 1.20916 1.86413 1.47134 1.67326 1.10454 1.06704 1.21232 0.97748 0.98286 0.81996 1.19645 0.95311 0.95544 0.94191 1.21279 0.95921 1.39775 0.99949 0.94539 1.25945 1.03773 0.94170 0.95002 1.70051 1.33903 1.42114 1.12596 0.85663 0.78992 0.78639 0.79368 1.18138 1.20687 1.18477 0.89765 0.91839 0.89100 0.90145 0.89467 0.86785 0.78433 0.88932 0.91417 0.91676 0.90907 0.90912 0.90766 0.86585 0.90836 0.86836 0.87116 0.90325 0.92918 0.98050 0.95855 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.26 71.23 0.73 -0.32 16 2 C 0.08 1.50 7.22 43.10 0.31 1.81 16 3 N -0.34 -7.29 12.58 -47.39 -0.60 -7.88 16 4 N -0.38 -5.75 4.01 -369.56 -1.48 -7.23 16 5 C 0.09 0.65 11.47 127.77 1.47 2.12 16 6 C 0.06 0.78 9.82 83.54 0.82 1.60 16 7 C -0.24 -3.57 4.46 -20.14 -0.09 -3.66 16 8 C 0.12 1.45 4.20 85.56 0.36 1.81 16 9 N -0.52 -7.97 5.30 -864.20 -4.58 -12.55 16 10 C 0.06 0.97 6.18 86.68 0.54 1.51 16 11 C -0.15 -3.02 5.79 31.74 0.18 -2.84 16 12 C 0.13 3.22 3.16 46.38 0.15 3.36 16 13 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.07 1.28 3.53 45.10 0.16 1.44 16 15 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 16 C -0.14 -1.87 3.73 30.60 0.11 -1.76 16 17 C -0.12 -2.43 6.08 29.70 0.18 -2.25 16 18 C 0.50 16.69 7.47 87.76 0.66 17.35 16 19 O -0.60 -27.14 16.21 -3.04 -0.05 -27.19 16 20 N -0.59 -19.25 2.48 -798.86 -1.98 -21.23 16 21 C 0.13 5.51 5.02 86.38 0.43 5.95 16 22 C -0.01 -0.43 4.35 29.85 0.13 -0.30 16 23 C -0.53 -31.98 9.66 25.60 0.25 -31.74 16 24 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 25 C 0.01 0.51 5.47 84.65 0.46 0.97 16 26 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 27 Si 0.95 46.39 27.47 68.60 1.88 48.27 16 28 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 29 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 30 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.28 7.96 -2.39 -0.02 1.26 16 34 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.20 1.08 8.04 -2.91 -0.02 1.06 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.60 5.48 -2.39 -0.01 0.58 16 40 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.07 1.03 5.39 -2.39 -0.01 1.01 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.07 1.48 7.38 -2.39 -0.02 1.46 16 44 H 0.12 0.92 6.54 -2.39 -0.02 0.90 16 45 H 0.07 1.01 6.52 -2.39 -0.02 0.99 16 46 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.08 3.09 7.78 -2.39 -0.02 3.07 16 49 H 0.05 2.51 7.15 -2.38 -0.02 2.50 16 50 H 0.00 0.06 7.20 -2.39 -0.02 0.04 16 51 H 0.02 1.10 7.57 -2.39 -0.02 1.08 16 52 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -83.39 401.64 1.19 -82.20 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.85 Total: 11.07 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.85 Total: -4.94 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -8.34 Total: -109.41 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.88 Total: 48.27 kcal Total: -83.39 1.19 -82.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273019436.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.935 kcal (2) G-P(sol) polarization free energy of solvation -83.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds