Wall clock time and date at job start Sat Apr 11 2020 08:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39778 * 125.83870 * 2 1 4 4 C 1.36172 * 107.81230 * 180.16030 * 3 2 1 5 5 N 1.39208 * 126.21530 * 179.84680 * 4 3 2 6 6 C 1.46814 * 111.00261 * 63.98003 * 5 4 3 7 7 C 1.53265 * 109.44583 * 170.79835 * 6 5 4 8 8 C 1.53219 * 108.61754 * 55.58624 * 7 6 5 9 9 C 1.52744 * 117.83949 * 162.99785 * 8 7 6 10 10 C 1.52759 * 117.78965 * 94.00210 * 8 7 6 11 11 H 1.09004 * 117.52803 * 215.27668 * 10 8 7 12 12 C 1.50695 * 117.50872 * 0.34520 * 10 8 7 13 13 O 1.21283 * 119.99894 * 66.66148 * 12 10 8 14 14 N 1.34777 * 120.00250 * 246.38762 * 12 10 8 15 15 C 1.46505 * 119.99892 * 180.27577 * 14 12 10 16 16 C 1.52997 * 109.46811 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47036 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00269 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99474 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47029 * 90.00195 * 21 19 17 23 23 H 1.48497 * 109.47125 * 210.00766 * 21 19 17 24 24 H 1.48497 * 109.46955 * 330.00514 * 21 19 17 25 25 C 1.53214 * 114.74408 * 308.58302 * 8 7 6 26 26 C 1.46802 * 111.00041 * 299.27362 * 5 4 3 27 27 N 1.35240 * 107.55904 * 359.58099 * 4 3 2 28 28 C 1.46504 * 126.04480 * 180.26251 * 27 4 3 29 29 N 1.30835 * 125.84025 * 179.69025 * 2 1 3 30 30 H 1.08997 * 109.47619 * 270.28386 * 1 2 3 31 31 H 1.09003 * 109.47102 * 30.28470 * 1 2 3 32 32 H 1.09000 * 109.47317 * 150.27801 * 1 2 3 33 33 H 1.08001 * 126.09315 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.47564 * 50.80037 * 6 5 4 35 35 H 1.09003 * 109.47341 * 290.78956 * 6 5 4 36 36 H 1.09000 * 109.60934 * 295.85047 * 7 6 5 37 37 H 1.08999 * 109.75510 * 175.41551 * 7 6 5 38 38 H 1.08999 * 117.50550 * 144.78667 * 9 8 7 39 39 H 1.09002 * 117.50109 * 359.72881 * 9 8 7 40 40 H 0.96993 * 120.00183 * 0.27060 * 14 12 10 41 41 H 1.08997 * 109.47203 * 299.99923 * 15 14 12 42 42 H 1.09005 * 109.47133 * 60.00045 * 15 14 12 43 43 H 1.08999 * 109.47378 * 299.99432 * 16 15 14 44 44 H 1.08999 * 109.47596 * 60.00350 * 16 15 14 45 45 H 0.97005 * 119.99362 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.61035 * 171.15665 * 25 8 7 47 47 H 1.09001 * 109.61374 * 291.67363 * 25 8 7 48 48 H 1.08999 * 109.48069 * 309.19937 * 26 5 4 49 49 H 1.08998 * 109.47928 * 69.20763 * 26 5 4 50 50 H 1.08996 * 109.47375 * 94.54853 * 28 27 4 51 51 H 1.08997 * 109.47411 * 214.55274 * 28 27 4 52 52 H 1.08998 * 109.46860 * 334.54872 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7118 -0.0036 5 7 4.7499 1.5252 -0.0079 6 6 4.8294 2.3218 1.2229 7 6 6.1891 3.0260 1.2880 8 6 6.3729 3.8536 0.0117 9 6 7.4464 4.9402 0.0146 10 6 5.9658 5.3253 0.0523 11 1 5.5339 5.7537 -0.8522 12 6 5.4186 5.8605 1.3504 13 8 6.1370 5.9400 2.3244 14 7 4.1325 6.2561 1.4276 15 6 3.6023 6.7820 2.6880 16 6 2.1296 7.1543 2.5059 17 6 1.5839 7.6948 3.8025 18 1 2.2238 7.7660 4.6696 19 6 0.2682 8.0993 3.8816 20 7 -0.5108 8.0130 2.8255 21 14 -0.4079 8.7699 5.4886 22 1 -0.2123 10.2413 5.5323 23 1 -1.8571 8.4600 5.5836 24 1 0.3083 8.1413 6.6275 25 6 6.1382 3.0830 -1.2916 26 6 4.7815 2.3754 -1.2042 27 7 3.6093 -0.6406 0.0036 28 6 4.7868 -1.5122 0.0083 29 7 2.2731 -1.0606 0.0057 30 1 -0.3634 0.0051 1.0276 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3634 -0.8925 -0.5095 33 1 1.9904 2.1599 0.0004 34 1 4.7173 1.6673 2.0872 35 1 4.0337 3.0668 1.2255 36 1 6.9830 2.2826 1.3595 37 1 6.2228 3.6822 2.1576 38 1 7.9884 5.1148 -0.9148 39 1 8.0247 5.0740 0.9288 40 1 3.5580 6.1926 0.6488 41 1 3.6913 6.0225 3.4647 42 1 4.1680 7.6673 2.9789 43 1 2.0401 7.9137 1.7291 44 1 1.5642 6.2689 2.2153 45 1 -1.4363 8.2980 2.8810 46 1 6.1352 3.7775 -2.1317 47 1 6.9282 2.3443 -1.4273 48 1 4.6349 1.7597 -2.0916 49 1 3.9871 3.1191 -1.1427 50 1 5.0303 -1.7884 1.0342 51 1 4.5753 -2.4118 -0.5697 52 1 5.6309 -0.9849 -0.4361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273570415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:11 Heat of formation + Delta-G solvation = 59.103711 kcal Electronic energy + Delta-G solvation = -31049.914361 eV Core-core repulsion = 27051.349172 eV Total energy + Delta-G solvation = -3998.565189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.58334 -40.34892 -38.45297 -36.31523 -34.79892 -33.94115 -32.84671 -31.29916 -31.04907 -29.75428 -29.54147 -27.96164 -25.62720 -25.41341 -23.69263 -23.47641 -22.59259 -20.96147 -20.62941 -20.00383 -19.71534 -18.59438 -17.35825 -16.96389 -16.33480 -15.93533 -15.86233 -15.12432 -14.96778 -14.79665 -14.67819 -14.52955 -14.19533 -14.01158 -13.72837 -13.61446 -13.27139 -13.22066 -12.97941 -12.89271 -12.63066 -12.53037 -12.38800 -12.31454 -12.17795 -11.90649 -11.76386 -11.40744 -11.23011 -11.04674 -10.79028 -10.71404 -10.65930 -10.35560 -10.20422 -10.01568 -9.77182 -9.46571 -9.19199 -9.15266 -8.89982 -8.57483 -8.55305 -8.36996 -6.11093 -4.13935 1.66715 2.24225 2.63688 2.73485 3.28255 3.34480 3.38156 3.52140 3.57740 3.78644 4.39226 4.41080 4.46741 4.49064 4.63750 4.72579 4.88466 4.96349 5.01998 5.08764 5.10244 5.19831 5.24103 5.26112 5.27809 5.32997 5.34655 5.49511 5.55730 5.56303 5.60584 5.66642 5.68988 5.71089 5.76959 5.85242 5.91550 5.98817 6.06793 6.14236 6.31488 6.32461 6.43611 6.60684 6.62201 6.70705 6.89848 7.19503 7.49217 7.58955 7.67997 7.86895 7.99936 8.25836 8.63726 8.91891 9.51049 11.00431 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.003175 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.805718 B = 8817.696143 C =11471.030305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.081 3.919 3 C -0.290 4.290 4 C 0.263 3.737 5 N -0.492 5.492 6 C 0.073 3.927 7 C -0.087 4.087 8 C -0.096 4.096 9 C -0.137 4.137 10 C -0.185 4.185 11 H 0.119 0.881 12 C 0.536 3.464 13 O -0.551 6.551 14 N -0.718 5.718 15 C 0.122 3.878 16 C 0.014 3.986 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.896 3.104 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.076 4.076 26 C 0.071 3.929 27 N -0.360 5.360 28 C 0.107 3.893 29 N -0.295 5.295 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.397 0.603 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.081 0.919 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 -16.219 -12.352 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.322 4.322 4 C 0.042 3.958 5 N -0.216 5.216 6 C -0.054 4.054 7 C -0.125 4.125 8 C -0.097 4.097 9 C -0.175 4.175 10 C -0.206 4.206 11 H 0.137 0.863 12 C 0.322 3.678 13 O -0.430 6.430 14 N -0.366 5.366 15 C 0.000 4.000 16 C -0.024 4.024 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.114 4.114 26 C -0.056 4.056 27 N -0.143 5.143 28 C -0.035 4.035 29 N -0.120 5.120 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.165 0.835 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.230 0.770 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.100 0.900 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.826 -17.774 -11.690 24.841 hybrid contribution -1.430 1.838 0.451 2.372 sum 11.396 -15.936 -11.238 22.586 Atomic orbital electron populations 1.20205 0.86602 1.03242 1.03215 1.22154 0.96951 0.90559 0.98769 1.21565 0.91731 1.00229 1.18667 1.18972 0.90557 0.84712 1.01588 1.58326 1.35758 1.23156 1.04338 1.22123 0.97984 0.95465 0.89818 1.21360 0.96464 0.98412 0.96217 1.21454 1.03146 0.88063 0.97016 1.23009 0.90003 1.00373 1.04067 1.22484 1.00482 0.99396 0.98266 0.86263 1.19530 0.82251 0.77552 0.88487 1.90654 1.58284 1.55790 1.38256 1.46274 1.10868 1.63759 1.15739 1.21720 0.97425 0.97445 0.83391 1.19307 0.87844 0.97088 0.98119 1.21041 0.95915 1.42513 0.96598 0.92309 1.24987 0.96957 0.95614 0.96656 1.69953 1.06774 1.47538 1.28948 0.86526 0.78130 0.79308 0.83694 1.20559 1.21128 1.19723 1.21266 0.96883 0.98472 0.94763 1.22116 0.97717 0.94841 0.90953 1.48517 1.05605 1.03636 1.56538 1.21770 0.84361 0.94182 1.03160 1.77354 0.85600 1.22205 1.26813 0.90352 0.90232 0.91072 0.83535 0.90551 0.93048 0.90443 0.89199 0.88124 0.87360 0.76984 0.92660 0.92609 0.96016 0.95990 0.92840 0.90559 0.90164 0.90529 0.93200 0.91106 0.89989 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.44 36.00 0.38 -0.36 16 2 C 0.08 1.05 7.21 -82.44 -0.59 0.46 16 3 C -0.29 -3.79 10.13 -39.75 -0.40 -4.19 16 4 C 0.26 3.22 5.53 -153.41 -0.85 2.38 16 5 N -0.49 -5.19 4.44 -173.06 -0.77 -5.96 16 6 C 0.07 0.86 5.26 -3.73 -0.02 0.84 16 7 C -0.09 -0.98 5.52 -26.48 -0.15 -1.12 16 8 C -0.10 -0.95 2.02 -154.54 -0.31 -1.26 16 9 C -0.14 -1.39 9.51 -26.84 -0.26 -1.64 16 10 C -0.19 -2.14 5.88 -91.88 -0.54 -2.68 16 11 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 12 C 0.54 8.61 6.56 -10.99 -0.07 8.54 16 13 O -0.55 -10.73 14.99 5.56 0.08 -10.65 16 14 N -0.72 -12.11 5.56 -60.29 -0.33 -12.45 16 15 C 0.12 2.56 5.61 -4.04 -0.02 2.53 16 16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 21 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.08 -0.59 5.87 -26.48 -0.16 -0.75 16 26 C 0.07 0.65 5.22 -3.74 -0.02 0.63 16 27 N -0.36 -4.39 4.02 -67.24 -0.27 -4.66 16 28 C 0.11 0.88 11.43 59.85 0.68 1.57 16 29 N -0.30 -4.07 12.56 33.65 0.42 -3.65 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.26 5.98 -51.93 -0.31 0.95 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.11 1.28 7.67 -51.93 -0.40 0.88 16 40 H 0.40 5.89 8.47 -40.82 -0.35 5.54 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.08 0.66 8.07 -51.93 -0.42 0.25 16 49 H 0.05 0.50 8.05 -51.93 -0.42 0.08 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 52 H 0.09 0.65 8.00 -51.93 -0.42 0.24 16 LS Contribution 422.00 15.07 6.36 6.36 Total: -1.00 -32.81 422.00 -10.70 -43.51 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -9.03 Total: 4.36 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -2.88 Total: -8.00 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.21 Total: -51.85 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.81 -10.70 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273570415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.616 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds