Wall clock time and date at job start Sat Apr 11 2020 08:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39778 * 125.83870 * 2 1 4 4 C 1.36172 * 107.81230 * 180.16030 * 3 2 1 5 5 N 1.39208 * 126.21530 * 179.84680 * 4 3 2 6 6 C 1.46814 * 111.00261 * 63.98003 * 5 4 3 7 7 C 1.53265 * 109.44583 * 170.79835 * 6 5 4 8 8 C 1.53219 * 108.61754 * 55.58624 * 7 6 5 9 9 C 1.52744 * 117.83949 * 162.99785 * 8 7 6 10 10 C 1.52759 * 117.78965 * 94.00210 * 8 7 6 11 11 H 1.09004 * 117.52803 * 215.27668 * 10 8 7 12 12 C 1.50695 * 117.50872 * 0.34520 * 10 8 7 13 13 O 1.21283 * 119.99894 * 66.66148 * 12 10 8 14 14 N 1.34777 * 120.00250 * 246.38762 * 12 10 8 15 15 C 1.46505 * 119.99892 * 180.27577 * 14 12 10 16 16 C 1.52997 * 109.46811 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47036 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99809 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00269 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99474 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00234 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47029 * 90.00195 * 21 19 17 23 23 H 1.48497 * 109.47125 * 210.00766 * 21 19 17 24 24 H 1.48497 * 109.46955 * 330.00514 * 21 19 17 25 25 C 1.53214 * 114.74408 * 308.58302 * 8 7 6 26 26 C 1.46802 * 111.00041 * 299.27362 * 5 4 3 27 27 N 1.35240 * 107.55904 * 359.58099 * 4 3 2 28 28 C 1.46504 * 126.04480 * 180.26251 * 27 4 3 29 29 N 1.30835 * 125.84025 * 179.69025 * 2 1 3 30 30 H 1.08997 * 109.47619 * 270.28386 * 1 2 3 31 31 H 1.09003 * 109.47102 * 30.28470 * 1 2 3 32 32 H 1.09000 * 109.47317 * 150.27801 * 1 2 3 33 33 H 1.08001 * 126.09315 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.47564 * 50.80037 * 6 5 4 35 35 H 1.09003 * 109.47341 * 290.78956 * 6 5 4 36 36 H 1.09000 * 109.60934 * 295.85047 * 7 6 5 37 37 H 1.08999 * 109.75510 * 175.41551 * 7 6 5 38 38 H 1.08999 * 117.50550 * 144.78667 * 9 8 7 39 39 H 1.09002 * 117.50109 * 359.72881 * 9 8 7 40 40 H 0.96993 * 120.00183 * 0.27060 * 14 12 10 41 41 H 1.08997 * 109.47203 * 299.99923 * 15 14 12 42 42 H 1.09005 * 109.47133 * 60.00045 * 15 14 12 43 43 H 1.08999 * 109.47378 * 299.99432 * 16 15 14 44 44 H 1.08999 * 109.47596 * 60.00350 * 16 15 14 45 45 H 0.97005 * 119.99362 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.61035 * 171.15665 * 25 8 7 47 47 H 1.09001 * 109.61374 * 291.67363 * 25 8 7 48 48 H 1.08999 * 109.48069 * 309.19937 * 26 5 4 49 49 H 1.08998 * 109.47928 * 69.20763 * 26 5 4 50 50 H 1.08996 * 109.47375 * 94.54853 * 28 27 4 51 51 H 1.08997 * 109.47411 * 214.55274 * 28 27 4 52 52 H 1.08998 * 109.46860 * 334.54872 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7118 -0.0036 5 7 4.7499 1.5252 -0.0079 6 6 4.8294 2.3218 1.2229 7 6 6.1891 3.0260 1.2880 8 6 6.3729 3.8536 0.0117 9 6 7.4464 4.9402 0.0146 10 6 5.9658 5.3253 0.0523 11 1 5.5339 5.7537 -0.8522 12 6 5.4186 5.8605 1.3504 13 8 6.1370 5.9400 2.3244 14 7 4.1325 6.2561 1.4276 15 6 3.6023 6.7820 2.6880 16 6 2.1296 7.1543 2.5059 17 6 1.5839 7.6948 3.8025 18 1 2.2238 7.7660 4.6696 19 6 0.2682 8.0993 3.8816 20 7 -0.5108 8.0130 2.8255 21 14 -0.4079 8.7699 5.4886 22 1 -0.2123 10.2413 5.5323 23 1 -1.8571 8.4600 5.5836 24 1 0.3083 8.1413 6.6275 25 6 6.1382 3.0830 -1.2916 26 6 4.7815 2.3754 -1.2042 27 7 3.6093 -0.6406 0.0036 28 6 4.7868 -1.5122 0.0083 29 7 2.2731 -1.0606 0.0057 30 1 -0.3634 0.0051 1.0276 31 1 -0.3633 0.8874 -0.5183 32 1 -0.3634 -0.8925 -0.5095 33 1 1.9904 2.1599 0.0004 34 1 4.7173 1.6673 2.0872 35 1 4.0337 3.0668 1.2255 36 1 6.9830 2.2826 1.3595 37 1 6.2228 3.6822 2.1576 38 1 7.9884 5.1148 -0.9148 39 1 8.0247 5.0740 0.9288 40 1 3.5580 6.1926 0.6488 41 1 3.6913 6.0225 3.4647 42 1 4.1680 7.6673 2.9789 43 1 2.0401 7.9137 1.7291 44 1 1.5642 6.2689 2.2153 45 1 -1.4363 8.2980 2.8810 46 1 6.1352 3.7775 -2.1317 47 1 6.9282 2.3443 -1.4273 48 1 4.6349 1.7597 -2.0916 49 1 3.9871 3.1191 -1.1427 50 1 5.0303 -1.7884 1.0342 51 1 4.5753 -2.4118 -0.5697 52 1 5.6309 -0.9849 -0.4361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273570415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:10 Heat of formation + Delta-G solvation = 38.987727 kcal Electronic energy + Delta-G solvation = -31050.786655 eV Core-core repulsion = 27051.349172 eV Total energy + Delta-G solvation = -3999.437483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.51021 -41.42394 -39.58711 -37.33914 -36.43232 -34.81002 -34.79358 -32.12750 -32.02321 -31.49779 -30.35777 -28.90643 -27.22370 -26.34587 -24.95377 -24.44155 -23.51006 -22.72805 -21.56925 -21.19295 -20.62569 -19.58778 -18.60164 -18.23701 -17.93544 -16.88519 -16.81867 -16.59091 -16.48922 -16.18920 -15.72154 -15.54858 -15.36628 -15.01486 -14.93231 -14.43408 -14.37058 -14.27978 -14.10777 -14.05078 -13.88439 -13.41790 -13.38495 -13.24016 -13.10767 -13.05540 -12.95086 -12.74677 -12.61509 -12.53108 -12.28664 -12.19281 -11.73789 -11.67560 -11.59050 -11.46611 -11.04837 -10.93600 -10.62853 -10.61332 -10.08646 -9.99958 -9.78451 -9.52800 -8.25540 -6.36031 0.71537 1.39716 1.40265 1.40640 1.52011 1.53607 1.65535 2.24330 2.44210 2.66200 2.86170 3.09145 3.56701 3.57950 3.65032 3.78608 3.81927 4.03712 4.05854 4.17043 4.25786 4.36311 4.41511 4.43649 4.45738 4.47880 4.49980 4.53156 4.56485 4.68769 4.74683 4.77434 4.79869 4.80712 4.82286 4.89766 4.93778 4.97295 5.04697 5.09165 5.14030 5.25733 5.29816 5.33195 5.48976 5.54748 5.55831 5.69818 5.76679 5.77311 6.14653 6.29567 6.64984 6.72634 6.76853 7.30866 7.33331 8.86169 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008219 B = 0.003175 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3405.805718 B = 8817.696143 C =11471.030305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.070 3.930 3 C -0.313 4.313 4 C 0.263 3.737 5 N -0.479 5.479 6 C 0.081 3.919 7 C -0.083 4.083 8 C -0.085 4.085 9 C -0.124 4.124 10 C -0.196 4.196 11 H 0.147 0.853 12 C 0.534 3.466 13 O -0.588 6.588 14 N -0.716 5.716 15 C 0.143 3.857 16 C 0.026 3.974 17 C -0.548 4.548 18 H 0.057 0.943 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.963 3.037 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.065 4.065 26 C 0.067 3.933 27 N -0.363 5.363 28 C 0.100 3.900 29 N -0.320 5.320 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.141 0.859 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.408 0.592 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.008 0.992 44 H 0.006 0.994 45 H 0.266 0.734 46 H 0.102 0.898 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.040 0.960 50 H 0.077 0.923 51 H 0.094 0.906 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.224 -16.772 -13.838 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.095 4.095 3 C -0.345 4.345 4 C 0.040 3.960 5 N -0.203 5.203 6 C -0.046 4.046 7 C -0.120 4.120 8 C -0.086 4.086 9 C -0.161 4.161 10 C -0.217 4.217 11 H 0.164 0.836 12 C 0.323 3.677 13 O -0.470 6.470 14 N -0.365 5.365 15 C 0.019 3.981 16 C -0.011 4.011 17 C -0.586 4.586 18 H 0.075 0.925 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.102 4.102 26 C -0.059 4.059 27 N -0.145 5.145 28 C -0.040 4.040 29 N -0.145 5.145 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.243 0.757 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.025 0.975 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.058 0.942 50 H 0.096 0.904 51 H 0.113 0.887 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.128 -18.345 -13.207 26.657 hybrid contribution -1.796 1.972 0.933 2.825 sum 12.332 -16.374 -12.274 23.892 Atomic orbital electron populations 1.20285 0.85020 1.04196 1.03637 1.22588 0.98208 0.90330 0.98339 1.21686 0.92564 1.00191 1.20016 1.19128 0.90791 0.85164 1.00873 1.58439 1.34675 1.22880 1.04317 1.21955 0.97649 0.94773 0.90266 1.21260 0.96404 0.98366 0.96005 1.21527 1.02469 0.87166 0.97425 1.23110 0.88961 0.99210 1.04849 1.22501 1.01990 1.00925 0.96252 0.83574 1.20324 0.81224 0.76325 0.89848 1.90634 1.59013 1.57125 1.40198 1.46108 1.11766 1.63988 1.14671 1.21166 0.95241 0.96624 0.85026 1.19093 0.89707 0.95715 0.96630 1.21451 0.96538 1.42996 0.97653 0.92520 1.25844 0.97228 0.95744 1.00174 1.70054 1.07187 1.48207 1.30920 0.85481 0.77536 0.78841 0.79434 1.19691 1.20407 1.19186 1.21299 0.96164 0.98814 0.93941 1.22246 0.98559 0.94692 0.90444 1.48816 1.05966 1.03980 1.55759 1.22065 0.83503 0.94420 1.04061 1.77295 0.86530 1.22840 1.27842 0.90109 0.89350 0.90034 0.84097 0.91737 0.95396 0.88923 0.92343 0.84599 0.89358 0.75683 0.94033 0.93757 0.97380 0.97524 0.92513 0.87959 0.88457 0.89441 0.94161 0.90434 0.88727 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.44 71.24 0.74 -0.70 16 2 C 0.07 1.83 7.21 43.08 0.31 2.14 16 3 C -0.31 -8.32 10.13 22.16 0.22 -8.09 16 4 C 0.26 6.32 5.53 131.43 0.73 7.05 16 5 N -0.48 -9.53 4.44 -701.43 -3.11 -12.64 16 6 C 0.08 1.91 5.26 86.41 0.45 2.36 16 7 C -0.08 -1.80 5.52 30.76 0.17 -1.63 16 8 C -0.09 -1.48 2.02 -52.20 -0.11 -1.58 16 9 C -0.12 -2.15 9.51 30.52 0.29 -1.86 16 10 C -0.20 -4.15 5.88 -11.61 -0.07 -4.21 16 11 H 0.15 2.34 8.14 -2.39 -0.02 2.32 16 12 C 0.53 17.25 6.56 87.66 0.57 17.82 16 13 O -0.59 -23.51 14.99 -3.04 -0.05 -23.55 16 14 N -0.72 -24.69 5.56 -463.06 -2.57 -27.26 16 15 C 0.14 6.22 5.61 86.38 0.48 6.70 16 16 C 0.03 1.32 5.09 29.85 0.15 1.47 16 17 C -0.55 -30.83 9.11 25.60 0.23 -30.59 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.01 0.51 5.46 84.66 0.46 0.98 16 20 N -0.92 -54.14 13.29 21.45 0.28 -53.86 16 21 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.06 -0.75 5.87 30.76 0.18 -0.57 16 26 C 0.07 1.07 5.22 86.41 0.45 1.52 16 27 N -0.36 -8.56 4.02 -366.66 -1.47 -10.03 16 28 C 0.10 1.48 11.43 127.77 1.46 2.94 16 29 N -0.32 -8.76 12.56 -47.44 -0.60 -9.35 16 30 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 34 H 0.06 1.65 8.07 -2.39 -0.02 1.63 16 35 H 0.03 0.79 8.09 -2.39 -0.02 0.77 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.06 1.68 5.98 -2.39 -0.01 1.67 16 38 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.96 7.67 -2.39 -0.02 1.94 16 40 H 0.41 12.23 8.47 -92.71 -0.79 11.45 16 41 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 46 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 47 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.26 8.07 -2.39 -0.02 1.24 16 49 H 0.04 0.74 8.05 -2.39 -0.02 0.72 16 50 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 52 H 0.11 1.26 8.00 -2.39 -0.02 1.24 16 Total: -1.00 -72.79 422.00 1.37 -71.42 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.12 Total: 25.75 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: 6.75 Total: -6.28 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -7.47 Total: -113.15 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -72.79 1.37 -71.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273570415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.405 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds