Wall clock time and date at job start Sat Apr 11 2020 08:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39766 * 125.83605 * 2 1 4 4 C 1.36181 * 107.81430 * 180.16694 * 3 2 1 5 5 N 1.39206 * 126.22451 * 179.84461 * 4 3 2 6 6 C 1.46981 * 110.99685 * 306.90002 * 5 4 3 7 7 C 1.53038 * 109.47064 * 184.60379 * 6 5 4 8 8 C 1.53136 * 109.38384 * 300.23153 * 7 6 5 9 9 C 1.53257 * 109.06893 * 58.26070 * 8 7 6 10 10 C 1.45974 * 110.99630 * 71.29101 * 5 4 3 11 11 C 1.53983 * 110.67562 * 299.47827 * 10 5 4 12 12 C 1.51429 * 104.05714 * 94.02974 * 11 10 5 13 13 O 1.21284 * 124.94416 * 195.74974 * 12 11 10 14 14 N 1.34500 * 110.10825 * 15.72442 * 12 11 10 15 15 C 1.46510 * 124.34834 * 180.37095 * 14 12 11 16 16 C 1.52993 * 109.47256 * 95.62572 * 15 14 12 17 17 C 1.50698 * 109.47182 * 174.77030 * 16 15 14 18 18 H 1.08001 * 119.99638 * 5.19384 * 17 16 15 19 19 C 1.37876 * 120.00369 * 185.19245 * 17 16 15 20 20 N 1.31513 * 119.99563 * 5.43997 * 19 17 16 21 21 Si 1.86792 * 120.00215 * 185.43904 * 19 17 16 22 22 H 1.48507 * 109.47103 * 179.97438 * 21 19 17 23 23 H 1.48491 * 109.47354 * 300.00203 * 21 19 17 24 24 H 1.48502 * 109.47047 * 60.00356 * 21 19 17 25 25 C 1.46918 * 111.30273 * 0.63476 * 14 12 11 26 26 N 1.35248 * 107.55464 * 359.58549 * 4 3 2 27 27 C 1.46499 * 126.04501 * 180.26348 * 26 4 3 28 28 N 1.30838 * 125.83690 * 179.70289 * 2 1 3 29 29 H 1.09000 * 109.47219 * 275.28876 * 1 2 3 30 30 H 1.08993 * 109.47530 * 35.29135 * 1 2 3 31 31 H 1.09005 * 109.47527 * 155.29410 * 1 2 3 32 32 H 1.07996 * 126.09716 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.47367 * 304.60217 * 6 5 4 34 34 H 1.09004 * 109.47097 * 64.60817 * 6 5 4 35 35 H 1.08998 * 109.48592 * 60.19965 * 7 6 5 36 36 H 1.08992 * 109.48965 * 180.26124 * 7 6 5 37 37 H 1.09001 * 109.53188 * 178.13360 * 8 7 6 38 38 H 1.08998 * 109.53839 * 298.37981 * 8 7 6 39 39 H 1.08998 * 109.49052 * 183.58180 * 9 8 7 40 40 H 1.09001 * 109.49448 * 63.51030 * 9 8 7 41 41 H 1.09001 * 110.51254 * 335.38357 * 11 10 5 42 42 H 1.09003 * 110.62934 * 212.73035 * 11 10 5 43 43 H 1.08998 * 109.46604 * 335.62391 * 15 14 12 44 44 H 1.08999 * 109.46640 * 215.62631 * 15 14 12 45 45 H 1.09000 * 109.47099 * 54.76880 * 16 15 14 46 46 H 1.09007 * 109.47332 * 294.76821 * 16 15 14 47 47 H 0.96998 * 120.00291 * 355.07480 * 20 19 17 48 48 H 1.08997 * 110.26695 * 102.28069 * 25 14 12 49 49 H 1.09003 * 110.26782 * 224.34874 * 25 14 12 50 50 H 1.08996 * 109.47211 * 94.96155 * 27 26 4 51 51 H 1.08999 * 109.47189 * 214.96627 * 27 26 4 52 52 H 1.08997 * 109.46731 * 334.96187 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6203 0.7118 -0.0038 5 7 4.7500 1.5252 -0.0081 6 6 4.6924 2.5006 -1.1061 7 6 5.9981 3.2977 -1.1493 8 6 6.1910 4.0296 0.1820 9 6 6.2076 3.0031 1.3199 10 6 4.9231 2.1866 1.2816 11 6 3.7083 3.0763 1.6038 12 6 2.8110 2.1857 2.4373 13 8 1.6404 2.4016 2.6699 14 7 3.5010 1.1202 2.8817 15 6 2.9326 0.0546 3.7112 16 6 2.4981 -1.1096 2.8186 17 6 2.0328 -2.2558 3.6792 18 1 1.9661 -2.1345 4.7503 19 6 1.6922 -3.4594 3.0992 20 7 1.8744 -3.6428 1.8098 21 14 0.9721 -4.8295 4.1449 22 1 0.6929 -6.0107 3.2893 23 1 1.9412 -5.2040 5.2059 24 1 -0.2912 -4.3627 4.7708 25 6 4.8995 1.1653 2.4338 26 7 3.6093 -0.6407 0.0033 27 6 4.7867 -1.5123 0.0078 28 7 2.2730 -1.0607 0.0055 29 1 -0.3634 0.0947 1.0233 30 1 -0.3634 0.8387 -0.5937 31 1 -0.3634 -0.9336 -0.4295 32 1 1.9903 2.1598 0.0004 33 1 4.5558 1.9757 -2.0516 34 1 3.8565 3.1811 -0.9441 35 1 6.8339 2.6178 -1.3147 36 1 5.9540 4.0242 -1.9605 37 1 7.1366 4.5716 0.1662 38 1 5.3702 4.7303 0.3350 39 1 6.2807 3.5213 2.2760 40 1 7.0640 2.3397 1.1989 41 1 3.2018 3.3779 0.6869 42 1 4.0146 3.9523 2.1756 43 1 2.0688 0.4384 4.2539 44 1 3.6832 -0.2924 4.4213 45 1 3.3407 -1.4329 2.2074 46 1 1.6825 -0.7867 2.1715 47 1 2.1809 -2.9092 1.2541 48 1 5.5461 1.4943 3.2472 49 1 5.2126 0.1850 2.0742 50 1 5.0259 -1.7945 1.0331 51 1 4.5777 -2.4084 -0.5765 52 1 5.6327 -0.9823 -0.4299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273570561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:12 Heat of formation + Delta-G solvation = 45.612781 kcal Electronic energy + Delta-G solvation = -34865.046617 eV Core-core repulsion = 30865.896418 eV Total energy + Delta-G solvation = -3999.150199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.31667 -41.22540 -39.53686 -37.19613 -35.65802 -35.10643 -34.30601 -33.61182 -31.05481 -30.54658 -29.62482 -29.56921 -27.41332 -26.43475 -25.85983 -24.82157 -23.40653 -22.92986 -21.76267 -20.64713 -20.31781 -19.57174 -18.93435 -18.15209 -17.92333 -17.30920 -16.55056 -16.29041 -16.17122 -15.71235 -15.61973 -15.32342 -15.12860 -15.04404 -14.75389 -14.67067 -14.46798 -14.29514 -14.20450 -13.99710 -13.82173 -13.68527 -13.50355 -13.25057 -13.15552 -13.10650 -12.83528 -12.73260 -12.68748 -12.34378 -12.17124 -11.96446 -11.88122 -11.55818 -11.43200 -11.40018 -11.22068 -10.91148 -10.61765 -10.36903 -9.96026 -9.73428 -9.61535 -9.27682 -8.45434 -6.22253 0.92231 1.47749 1.52223 1.57080 1.59063 1.75902 1.87098 2.12038 2.61172 2.61934 3.23168 3.29828 3.31760 3.64253 3.70901 3.74350 4.01369 4.13770 4.16350 4.23988 4.27852 4.30954 4.33151 4.34730 4.41841 4.46034 4.51452 4.57747 4.60559 4.64589 4.67118 4.70830 4.75353 4.78095 4.84442 4.86660 4.94620 5.06269 5.10253 5.16629 5.28037 5.31082 5.35354 5.48442 5.55504 5.62712 5.66751 5.76451 5.87653 6.10671 6.28973 6.40913 6.45012 6.86398 6.93866 7.22725 7.62351 9.03929 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.004587 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.023991 B = 6103.211754 C = 6342.355897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.059 3.941 3 C -0.299 4.299 4 C 0.269 3.731 5 N -0.465 5.465 6 C 0.062 3.938 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.092 4.092 10 C 0.126 3.874 11 C -0.172 4.172 12 C 0.512 3.488 13 O -0.586 6.586 14 N -0.613 5.613 15 C 0.143 3.857 16 C 0.018 3.982 17 C -0.640 4.640 18 H 0.035 0.965 19 C -0.023 4.023 20 N -0.937 5.937 21 Si 1.106 2.894 22 H -0.283 1.283 23 H -0.271 1.271 24 H -0.281 1.281 25 C 0.100 3.900 26 N -0.349 5.349 27 C 0.108 3.892 28 N -0.291 5.291 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.010 0.990 46 H -0.004 1.004 47 H 0.296 0.704 48 H 0.107 0.893 49 H 0.065 0.935 50 H 0.053 0.947 51 H 0.075 0.925 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.008 17.866 -7.339 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C -0.331 4.331 4 C 0.047 3.953 5 N -0.189 5.189 6 C -0.064 4.064 7 C -0.146 4.146 8 C -0.156 4.156 9 C -0.130 4.130 10 C 0.036 3.964 11 C -0.213 4.213 12 C 0.302 3.698 13 O -0.467 6.467 14 N -0.344 5.344 15 C 0.021 3.979 16 C -0.020 4.020 17 C -0.678 4.678 18 H 0.053 0.947 19 C -0.225 4.225 20 N -0.575 5.575 21 Si 0.930 3.070 22 H -0.209 1.209 23 H -0.196 1.196 24 H -0.207 1.207 25 C -0.022 4.022 26 N -0.131 5.131 27 C -0.033 4.033 28 N -0.115 5.115 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.124 0.876 42 H 0.154 0.846 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.028 0.972 46 H 0.015 0.985 47 H 0.109 0.891 48 H 0.125 0.875 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.094 0.906 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 14.493 14.680 -7.316 21.888 hybrid contribution -1.006 2.028 0.534 2.326 sum 13.487 16.708 -6.782 22.518 Atomic orbital electron populations 1.20084 0.87440 1.03078 1.01682 1.22219 0.97294 0.91362 0.99681 1.21377 0.92161 0.98893 1.20707 1.18901 0.90559 0.84550 1.01276 1.58566 1.33708 1.21731 1.04858 1.22344 0.99795 0.92624 0.91650 1.21606 0.95442 0.98732 0.98800 1.21655 1.03647 0.97165 0.93136 1.21532 0.93197 0.97136 1.01151 1.21547 0.96706 0.91736 0.86402 1.23160 0.96978 0.99591 1.01565 1.21398 0.87013 0.82272 0.79142 1.90642 1.17828 1.76335 1.61934 1.48464 1.11904 1.22480 1.51595 1.21213 0.96640 0.87187 0.92862 1.19493 0.95406 0.92166 0.94925 1.22315 1.50724 1.00640 0.94155 0.94704 1.26955 0.95081 1.01983 0.98452 1.70647 1.43137 1.37521 1.06232 0.83087 0.76429 0.73532 0.73969 1.20892 1.19621 1.20727 1.22444 0.82087 1.00470 0.97238 1.48547 1.05362 1.03989 1.55200 1.21856 0.84445 0.94511 1.02462 1.77603 0.86685 1.22353 1.24881 0.93245 0.88296 0.91999 0.84237 0.90797 0.93549 0.90463 0.89149 0.88886 0.91418 0.88561 0.89233 0.87616 0.84650 0.94058 0.91442 0.97220 0.98532 0.89063 0.87499 0.91644 0.92807 0.90637 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.61 10.44 71.24 0.74 -1.87 16 2 C 0.06 2.60 5.38 43.08 0.23 2.83 16 3 C -0.30 -11.09 6.62 22.16 0.15 -10.95 16 4 C 0.27 8.75 3.77 131.43 0.50 9.24 16 5 N -0.47 -10.47 4.35 -654.61 -2.85 -13.32 16 6 C 0.06 1.05 4.93 86.30 0.43 1.48 16 7 C -0.11 -1.04 6.07 30.65 0.19 -0.85 16 8 C -0.12 -0.91 5.81 30.73 0.18 -0.73 16 9 C -0.09 -0.98 4.65 30.43 0.14 -0.84 16 10 C 0.13 2.53 0.72 4.12 0.00 2.53 16 11 C -0.17 -4.06 4.37 30.41 0.13 -3.92 16 12 C 0.51 18.99 5.03 87.93 0.44 19.44 16 13 O -0.59 -27.48 17.40 -3.04 -0.05 -27.53 16 14 N -0.61 -22.81 2.41 -818.23 -1.97 -24.78 16 15 C 0.14 6.71 5.93 86.38 0.51 7.23 16 16 C 0.02 0.99 3.59 29.85 0.11 1.10 16 17 C -0.64 -39.08 9.10 25.60 0.23 -38.85 16 18 H 0.03 2.11 7.75 -2.91 -0.02 2.08 16 19 C -0.02 -1.38 5.45 84.65 0.46 -0.92 16 20 N -0.94 -59.95 13.65 21.45 0.29 -59.65 16 21 Si 1.11 53.93 29.91 68.60 2.05 55.98 16 22 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 25 C 0.10 2.69 5.91 86.63 0.51 3.20 16 26 N -0.35 -13.41 2.79 -366.65 -1.02 -14.43 16 27 C 0.11 3.54 10.35 127.77 1.32 4.86 16 28 N -0.29 -13.75 8.42 -47.45 -0.40 -14.14 16 29 H 0.05 2.23 8.14 -2.39 -0.02 2.22 16 30 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 32 H 0.14 4.91 6.03 -2.91 -0.02 4.89 16 33 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.05 0.82 5.81 -2.38 -0.01 0.81 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.07 0.53 7.57 -2.39 -0.02 0.51 16 39 H 0.10 0.75 8.06 -2.39 -0.02 0.73 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 2.48 4.28 -2.39 -0.01 2.47 16 42 H 0.14 2.36 7.81 -2.39 -0.02 2.34 16 43 H 0.04 2.12 7.81 -2.39 -0.02 2.10 16 44 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.01 0.54 4.78 -2.39 -0.01 0.53 16 46 H 0.00 -0.22 5.26 -2.38 -0.01 -0.23 16 47 H 0.30 18.45 4.96 -92.71 -0.46 17.99 16 48 H 0.11 2.21 7.86 -2.39 -0.02 2.19 16 49 H 0.07 2.00 6.66 -2.39 -0.02 1.98 16 50 H 0.05 1.95 6.84 -2.39 -0.02 1.93 16 51 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 52 H 0.12 2.97 7.99 -2.39 -0.02 2.95 16 Total: -1.00 -84.82 379.23 3.56 -81.26 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.23 Total: 23.64 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 6.28 Total: -7.02 kcal Atomic # 7 Polarization: -120.38 SS G_CDS: -5.95 Total: -126.33 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.05 Total: -27.53 kcal Atomic # 14 Polarization: 53.93 SS G_CDS: 2.05 Total: 55.98 kcal Total: -84.82 3.56 -81.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273570561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.870 kcal (2) G-P(sol) polarization free energy of solvation -84.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds