Wall clock time and date at job start Sat Apr 11 2020 08:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39866 * 125.89839 * 2 1 4 4 C 1.35308 * 107.92291 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.13057 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46963 * 95.02275 * 5 4 3 7 7 C 1.46852 * 124.36803 * 270.00186 * 6 5 4 8 8 C 1.54653 * 105.50228 * 196.87074 * 7 6 5 9 9 C 1.53866 * 101.58493 * 335.24881 * 8 7 6 10 10 C 1.53243 * 110.59985 * 144.18670 * 9 8 7 11 11 C 1.54798 * 104.81100 * 122.16311 * 10 9 8 12 12 C 1.55003 * 102.94200 * 21.89825 * 11 10 9 13 13 N 1.47073 * 110.70548 * 263.77528 * 9 8 7 14 14 C 1.46907 * 111.00048 * 93.73303 * 13 9 8 15 15 C 1.52997 * 109.47162 * 169.99479 * 14 13 9 16 16 C 1.50699 * 109.46856 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00429 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99811 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99568 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99869 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47354 * 90.00021 * 20 18 16 22 22 H 1.48502 * 109.46935 * 209.99715 * 20 18 16 23 23 H 1.48493 * 109.47121 * 329.99555 * 20 18 16 24 24 C 1.34670 * 124.36460 * 90.00405 * 6 5 4 25 25 O 1.21274 * 125.08456 * 359.11587 * 24 6 5 26 26 N 1.34951 * 107.74517 * 0.22486 * 4 3 2 27 27 C 1.46503 * 126.03939 * 179.76962 * 26 4 3 28 28 N 1.30838 * 125.89796 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47019 * 89.99979 * 1 2 3 30 30 H 1.08999 * 109.46809 * 209.99723 * 1 2 3 31 31 H 1.08996 * 109.46714 * 329.99598 * 1 2 3 32 32 H 1.08004 * 126.03978 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47287 * 335.02470 * 5 4 3 34 34 H 1.09006 * 109.47377 * 215.02081 * 5 4 3 35 35 H 1.08995 * 110.24038 * 77.86244 * 7 6 5 36 36 H 1.08998 * 110.23604 * 315.87291 * 7 6 5 37 37 H 1.09001 * 111.00006 * 217.17299 * 8 7 6 38 38 H 1.09000 * 111.00172 * 93.32497 * 8 7 6 39 39 H 1.09002 * 110.37164 * 240.99411 * 10 9 8 40 40 H 1.08998 * 110.37341 * 3.21862 * 10 9 8 41 41 H 1.09000 * 110.72102 * 140.25933 * 11 10 9 42 42 H 1.09002 * 110.72123 * 263.35392 * 11 10 9 43 43 H 1.08998 * 110.64561 * 81.51178 * 12 11 10 44 44 H 1.09007 * 110.64353 * 204.41866 * 12 11 10 45 45 H 1.09001 * 109.46780 * 290.00265 * 14 13 9 46 46 H 1.08998 * 109.46657 * 49.99869 * 14 13 9 47 47 H 1.08994 * 109.47287 * 300.00267 * 15 14 13 48 48 H 1.09004 * 109.46982 * 60.00151 * 15 14 13 49 49 H 0.97003 * 119.99587 * 180.02562 * 19 18 16 50 50 H 1.09001 * 109.46987 * 90.00088 * 27 26 4 51 51 H 1.09000 * 109.47160 * 210.00678 * 27 26 4 52 52 H 1.09000 * 109.47010 * 330.00612 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8350 1.5990 -0.0013 6 7 5.3022 1.7875 1.3744 7 6 4.8586 2.8724 2.2591 8 6 5.9022 2.9289 3.3991 9 6 6.4537 1.4925 3.3846 10 6 7.9520 1.4870 3.7061 11 6 8.0861 0.5779 4.9518 12 6 6.8008 -0.2864 4.8908 13 7 5.7717 0.6634 4.3899 14 6 4.6361 -0.0555 3.7968 15 6 4.1087 -1.0881 4.7950 16 6 2.9434 -1.8251 4.1868 17 1 2.6124 -1.5817 3.1881 18 6 2.3005 -2.8109 4.9051 19 7 1.2839 -3.4544 4.3741 20 14 2.8735 -3.2324 6.6323 21 1 2.1466 -2.3888 7.6147 22 1 2.5971 -4.6648 6.9098 23 1 4.3323 -2.9788 6.7456 24 6 6.1939 0.9883 1.9906 25 8 6.7099 0.0084 1.4964 26 7 3.6088 -0.6341 -0.0060 27 6 4.7900 -1.5007 -0.0132 28 7 2.2742 -1.0599 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8899 0.5139 32 1 1.9923 2.1598 0.0004 33 1 4.5830 2.5665 -0.4352 34 1 5.6226 1.1301 -0.5914 35 1 3.8709 2.6498 2.6627 36 1 4.8411 3.8178 1.7169 37 1 5.4264 3.1551 4.3534 38 1 6.6871 3.6511 3.1748 39 1 8.5177 1.0728 2.8715 40 1 8.2953 2.4965 3.9324 41 1 8.9755 -0.0480 4.8786 42 1 8.1101 1.1744 5.8638 43 1 6.9285 -1.1164 4.1959 44 1 6.5375 -0.6541 5.8826 45 1 3.8442 0.6531 3.5543 46 1 4.9614 -0.5619 2.8880 47 1 4.9007 -1.7966 5.0375 48 1 3.7835 -0.5817 5.7039 49 1 0.8313 -4.1477 4.8795 50 1 5.0861 -1.7198 1.0127 51 1 4.5548 -2.4311 -0.5301 52 1 5.6078 -0.9960 -0.5275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:48 Heat of formation + Delta-G solvation = 60.708585 kcal Electronic energy + Delta-G solvation = -33570.669501 eV Core-core repulsion = 29572.173905 eV Total energy + Delta-G solvation = -3998.495596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.49479 -40.69748 -37.61186 -36.33821 -34.03863 -33.58873 -32.46556 -31.98279 -29.99037 -29.02872 -28.98025 -27.86054 -26.31365 -24.98520 -24.60278 -23.30311 -21.74757 -21.38047 -20.09135 -19.78111 -19.04917 -18.64796 -17.13208 -16.54568 -16.45193 -16.07791 -15.51177 -15.09565 -14.95266 -14.76903 -14.17105 -14.12717 -13.92807 -13.68806 -13.46699 -13.23514 -13.06399 -12.78375 -12.63291 -12.61857 -12.46406 -12.38344 -12.20400 -11.95013 -11.90097 -11.77896 -11.56436 -11.51476 -11.23945 -11.07201 -10.90471 -10.80446 -10.59250 -10.22032 -10.05877 -9.84967 -9.76887 -9.69776 -9.14227 -8.87578 -8.65388 -8.47732 -8.16020 -7.99552 -5.96543 -3.94896 2.04909 2.59287 2.94481 2.99255 3.33002 3.33446 3.40407 3.43932 4.12777 4.35407 4.45564 4.49581 4.66267 4.71196 4.86040 4.88071 4.97812 5.10060 5.19862 5.22624 5.32674 5.35990 5.45516 5.48308 5.64827 5.66385 5.66956 5.79553 5.81192 5.85447 5.88892 5.89730 5.95245 5.99362 6.03686 6.10469 6.14329 6.22731 6.23511 6.26733 6.35657 6.45395 6.53273 6.72236 7.04622 7.05530 7.09061 7.15742 7.38620 7.39136 7.50522 7.85527 8.18945 8.20639 8.60156 9.09820 9.64358 11.16369 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.006707 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.968999 B = 4173.444284 C = 6935.390561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.066 3.934 3 C -0.258 4.258 4 C 0.053 3.947 5 C 0.193 3.807 6 N -0.614 5.614 7 C 0.102 3.898 8 C -0.115 4.115 9 C 0.061 3.939 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.035 3.965 13 N -0.486 5.486 14 C 0.056 3.944 15 C -0.006 4.006 16 C -0.515 4.515 17 H 0.072 0.928 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.876 3.124 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.516 3.484 25 O -0.526 6.526 26 N -0.349 5.349 27 C 0.108 3.892 28 N -0.268 5.268 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.140 0.860 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.015 0.985 48 H 0.018 0.982 49 H 0.261 0.739 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 16.055 -7.086 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C -0.289 4.289 4 C -0.077 4.077 5 C 0.069 3.931 6 N -0.348 5.348 7 C -0.021 4.021 8 C -0.154 4.154 9 C -0.033 4.033 10 C -0.148 4.148 11 C -0.159 4.159 12 C -0.092 4.092 13 N -0.211 5.211 14 C -0.070 4.070 15 C -0.044 4.044 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.192 1.192 24 C 0.303 3.697 25 O -0.401 6.401 26 N -0.130 5.130 27 C -0.033 4.033 28 N -0.092 5.092 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.085 0.915 46 H 0.055 0.945 47 H 0.033 0.967 48 H 0.036 0.964 49 H 0.071 0.929 50 H 0.101 0.899 51 H 0.099 0.901 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.245 14.314 -6.980 18.936 hybrid contribution 0.240 -0.071 0.314 0.401 sum 10.485 14.243 -6.667 18.901 Atomic orbital electron populations 1.20118 0.87048 1.03607 1.02036 1.22219 0.96866 0.90658 1.00220 1.20979 0.90804 0.99382 1.17729 1.21252 0.96875 0.85282 1.04275 1.19759 0.92151 0.98477 0.82734 1.48398 1.43268 1.30005 1.13111 1.22217 0.99115 0.89661 0.91076 1.22650 0.98352 0.94613 0.99739 1.22117 0.96111 0.96003 0.89071 1.22289 0.92661 1.00856 0.98976 1.22524 0.97769 0.97841 0.97734 1.23288 0.90130 0.94591 1.01195 1.65083 1.06873 1.20850 1.28272 1.22439 0.90999 0.96187 0.97417 1.19585 0.96612 0.93336 0.94852 1.20993 1.13085 1.18311 1.02975 0.91025 1.24963 0.94661 0.95772 0.97702 1.69939 1.21648 1.24501 1.37508 0.86837 0.79752 0.77440 0.85581 1.20315 1.21496 1.19174 1.21263 0.77963 0.82281 0.88216 1.90665 1.53053 1.25531 1.70853 1.48371 1.05677 1.03873 1.55112 1.21880 0.83000 0.94047 1.04419 1.77497 0.86024 1.22391 1.23248 0.91247 0.90526 0.90841 0.84192 0.87889 0.89273 0.90538 0.90350 0.87936 0.89955 0.90841 0.90504 0.91159 0.90769 0.92991 0.89620 0.91549 0.94518 0.96721 0.96395 0.92913 0.89923 0.90058 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.04 10.45 36.01 0.38 -0.66 16 2 C 0.07 1.21 7.22 -82.40 -0.59 0.62 16 3 C -0.26 -4.08 10.65 -40.02 -0.43 -4.50 16 4 C 0.05 0.83 6.51 -82.26 -0.54 0.30 16 5 C 0.19 2.33 6.11 -5.19 -0.03 2.30 16 6 N -0.61 -8.07 2.91 -173.87 -0.51 -8.58 16 7 C 0.10 1.10 6.85 -2.98 -0.02 1.08 16 8 C -0.12 -1.21 6.33 -25.41 -0.16 -1.38 16 9 C 0.06 0.85 0.79 -132.18 -0.10 0.74 16 10 C -0.11 -1.31 6.18 -25.66 -0.16 -1.46 16 11 C -0.12 -1.49 7.07 -24.73 -0.17 -1.67 16 12 C 0.04 0.59 5.11 -1.75 -0.01 0.58 16 13 N -0.49 -8.36 5.03 -216.76 -1.09 -9.45 16 14 C 0.06 1.20 4.16 -3.82 -0.02 1.19 16 15 C -0.01 -0.16 3.72 -27.88 -0.10 -0.26 16 16 C -0.52 -15.35 9.66 -34.44 -0.33 -15.68 16 17 H 0.07 2.38 7.99 -52.49 -0.42 1.96 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.90 -28.61 13.96 55.43 0.77 -27.84 16 20 Si 0.88 22.53 27.47 -169.99 -4.67 17.86 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 24 C 0.52 8.04 4.46 -11.13 -0.05 7.99 16 25 O -0.53 -9.50 13.98 5.56 0.08 -9.42 16 26 N -0.35 -6.57 4.01 -63.88 -0.26 -6.82 16 27 C 0.11 1.87 10.11 59.85 0.60 2.47 16 28 N -0.27 -5.73 12.58 33.67 0.42 -5.31 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.06 7.04 -51.93 -0.37 0.69 16 35 H 0.08 0.96 7.46 -51.93 -0.39 0.58 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.10 8.07 -51.93 -0.42 0.68 16 38 H 0.08 0.66 7.57 -51.93 -0.39 0.26 16 39 H 0.07 0.93 7.44 -51.93 -0.39 0.55 16 40 H 0.08 0.72 7.40 -51.93 -0.38 0.33 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.97 7.98 -51.93 -0.41 0.56 16 44 H 0.09 1.46 7.72 -51.92 -0.40 1.06 16 45 H 0.07 1.48 7.08 -51.93 -0.37 1.11 16 46 H 0.04 0.86 5.18 -51.93 -0.27 0.59 16 47 H 0.01 0.37 5.86 -51.93 -0.30 0.07 16 48 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 49 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 50 H 0.08 1.69 6.60 -51.93 -0.34 1.34 16 51 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 52 H 0.08 1.22 6.67 -51.93 -0.35 0.88 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -36.39 400.64 -9.61 -46.00 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.56 Total: 3.84 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.84 Total: -6.32 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.66 Total: -58.00 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.39 -9.61 -46.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.704 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds