Wall clock time and date at job start Sat Apr 11 2020 08:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39866 * 125.89839 * 2 1 4 4 C 1.35308 * 107.92291 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.13057 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.46963 * 95.02275 * 5 4 3 7 7 C 1.46852 * 124.36803 * 270.00186 * 6 5 4 8 8 C 1.54653 * 105.50228 * 196.87074 * 7 6 5 9 9 C 1.53866 * 101.58493 * 335.24881 * 8 7 6 10 10 C 1.53243 * 110.59985 * 144.18670 * 9 8 7 11 11 C 1.54798 * 104.81100 * 122.16311 * 10 9 8 12 12 C 1.55003 * 102.94200 * 21.89825 * 11 10 9 13 13 N 1.47073 * 110.70548 * 263.77528 * 9 8 7 14 14 C 1.46907 * 111.00048 * 93.73303 * 13 9 8 15 15 C 1.52997 * 109.47162 * 169.99479 * 14 13 9 16 16 C 1.50699 * 109.46856 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00429 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99811 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99568 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99869 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47354 * 90.00021 * 20 18 16 22 22 H 1.48502 * 109.46935 * 209.99715 * 20 18 16 23 23 H 1.48493 * 109.47121 * 329.99555 * 20 18 16 24 24 C 1.34670 * 124.36460 * 90.00405 * 6 5 4 25 25 O 1.21274 * 125.08456 * 359.11587 * 24 6 5 26 26 N 1.34951 * 107.74517 * 0.22486 * 4 3 2 27 27 C 1.46503 * 126.03939 * 179.76962 * 26 4 3 28 28 N 1.30838 * 125.89796 * 180.02562 * 2 1 3 29 29 H 1.08992 * 109.47019 * 89.99979 * 1 2 3 30 30 H 1.08999 * 109.46809 * 209.99723 * 1 2 3 31 31 H 1.08996 * 109.46714 * 329.99598 * 1 2 3 32 32 H 1.08004 * 126.03978 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.47287 * 335.02470 * 5 4 3 34 34 H 1.09006 * 109.47377 * 215.02081 * 5 4 3 35 35 H 1.08995 * 110.24038 * 77.86244 * 7 6 5 36 36 H 1.08998 * 110.23604 * 315.87291 * 7 6 5 37 37 H 1.09001 * 111.00006 * 217.17299 * 8 7 6 38 38 H 1.09000 * 111.00172 * 93.32497 * 8 7 6 39 39 H 1.09002 * 110.37164 * 240.99411 * 10 9 8 40 40 H 1.08998 * 110.37341 * 3.21862 * 10 9 8 41 41 H 1.09000 * 110.72102 * 140.25933 * 11 10 9 42 42 H 1.09002 * 110.72123 * 263.35392 * 11 10 9 43 43 H 1.08998 * 110.64561 * 81.51178 * 12 11 10 44 44 H 1.09007 * 110.64353 * 204.41866 * 12 11 10 45 45 H 1.09001 * 109.46780 * 290.00265 * 14 13 9 46 46 H 1.08998 * 109.46657 * 49.99869 * 14 13 9 47 47 H 1.08994 * 109.47287 * 300.00267 * 15 14 13 48 48 H 1.09004 * 109.46982 * 60.00151 * 15 14 13 49 49 H 0.97003 * 119.99587 * 180.02562 * 19 18 16 50 50 H 1.09001 * 109.46987 * 90.00088 * 27 26 4 51 51 H 1.09000 * 109.47160 * 210.00678 * 27 26 4 52 52 H 1.09000 * 109.47010 * 330.00612 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3272 1.1330 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8350 1.5990 -0.0013 6 7 5.3022 1.7875 1.3744 7 6 4.8586 2.8724 2.2591 8 6 5.9022 2.9289 3.3991 9 6 6.4537 1.4925 3.3846 10 6 7.9520 1.4870 3.7061 11 6 8.0861 0.5779 4.9518 12 6 6.8008 -0.2864 4.8908 13 7 5.7717 0.6634 4.3899 14 6 4.6361 -0.0555 3.7968 15 6 4.1087 -1.0881 4.7950 16 6 2.9434 -1.8251 4.1868 17 1 2.6124 -1.5817 3.1881 18 6 2.3005 -2.8109 4.9051 19 7 1.2839 -3.4544 4.3741 20 14 2.8735 -3.2324 6.6323 21 1 2.1466 -2.3888 7.6147 22 1 2.5971 -4.6648 6.9098 23 1 4.3323 -2.9788 6.7456 24 6 6.1939 0.9883 1.9906 25 8 6.7099 0.0084 1.4964 26 7 3.6088 -0.6341 -0.0060 27 6 4.7900 -1.5007 -0.0132 28 7 2.2742 -1.0599 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8899 0.5139 32 1 1.9923 2.1598 0.0004 33 1 4.5830 2.5665 -0.4352 34 1 5.6226 1.1301 -0.5914 35 1 3.8709 2.6498 2.6627 36 1 4.8411 3.8178 1.7169 37 1 5.4264 3.1551 4.3534 38 1 6.6871 3.6511 3.1748 39 1 8.5177 1.0728 2.8715 40 1 8.2953 2.4965 3.9324 41 1 8.9755 -0.0480 4.8786 42 1 8.1101 1.1744 5.8638 43 1 6.9285 -1.1164 4.1959 44 1 6.5375 -0.6541 5.8826 45 1 3.8442 0.6531 3.5543 46 1 4.9614 -0.5619 2.8880 47 1 4.9007 -1.7966 5.0375 48 1 3.7835 -0.5817 5.7039 49 1 0.8313 -4.1477 4.8795 50 1 5.0861 -1.7198 1.0127 51 1 4.5548 -2.4311 -0.5301 52 1 5.6078 -0.9960 -0.5275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:07:47 Heat of formation + Delta-G solvation = 33.911505 kcal Electronic energy + Delta-G solvation = -33571.831510 eV Core-core repulsion = 29572.173905 eV Total energy + Delta-G solvation = -3999.657605 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.67069 -41.99742 -38.85393 -37.46627 -35.82600 -35.02776 -34.00529 -33.53650 -31.20361 -30.79410 -30.33290 -28.90039 -27.44103 -26.45051 -26.28545 -24.58386 -23.18810 -22.46892 -21.38284 -21.36413 -20.36901 -19.88935 -19.06132 -17.93998 -17.70908 -17.29639 -16.82638 -16.44550 -16.30366 -16.24706 -15.99829 -15.42772 -15.11161 -14.91453 -14.86419 -14.62239 -14.50922 -14.35298 -14.04544 -13.87754 -13.71292 -13.58835 -13.45299 -13.26853 -13.12991 -13.10375 -13.02800 -12.83887 -12.77627 -12.36717 -12.28390 -12.05930 -11.92927 -11.81059 -11.63016 -11.51940 -11.44824 -11.38744 -11.05251 -10.82581 -10.18928 -9.82599 -9.53816 -9.38127 -8.33979 -6.39650 0.77366 1.26244 1.29101 1.40683 1.40812 1.62661 1.74160 2.21316 2.28451 2.87816 2.99224 3.33825 3.43771 3.55159 3.60364 3.66643 3.91126 3.96186 4.09295 4.12506 4.15166 4.19419 4.24107 4.30129 4.34517 4.42946 4.48514 4.55315 4.58785 4.69935 4.71069 4.74688 4.77007 4.79344 4.86170 4.89286 4.94489 5.01416 5.06032 5.09894 5.15546 5.21911 5.24479 5.25752 5.33844 5.47892 5.53844 5.77365 5.83300 5.94635 6.00730 6.11233 6.21378 6.66777 6.82900 7.06220 7.23691 8.82799 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.006707 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.968999 B = 4173.444284 C = 6935.390561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.050 3.950 3 C -0.260 4.260 4 C 0.055 3.945 5 C 0.192 3.808 6 N -0.611 5.611 7 C 0.096 3.904 8 C -0.105 4.105 9 C 0.049 3.951 10 C -0.103 4.103 11 C -0.109 4.109 12 C 0.026 3.974 13 N -0.482 5.482 14 C 0.084 3.916 15 C 0.003 3.997 16 C -0.524 4.524 17 H 0.017 0.983 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.952 3.048 21 H -0.260 1.260 22 H -0.282 1.282 23 H -0.251 1.251 24 C 0.502 3.498 25 O -0.561 6.561 26 N -0.367 5.367 27 C 0.119 3.881 28 N -0.341 5.341 29 H 0.097 0.903 30 H 0.045 0.955 31 H 0.097 0.903 32 H 0.179 0.821 33 H 0.153 0.847 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.123 0.877 39 H 0.062 0.938 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.018 0.982 44 H 0.078 0.922 45 H 0.052 0.948 46 H 0.009 0.991 47 H 0.012 0.988 48 H 0.023 0.977 49 H 0.265 0.735 50 H 0.042 0.958 51 H 0.080 0.920 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.257 20.263 -5.780 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 C -0.290 4.290 4 C -0.074 4.074 5 C 0.068 3.932 6 N -0.343 5.343 7 C -0.025 4.025 8 C -0.143 4.143 9 C -0.044 4.044 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.102 4.102 13 N -0.206 5.206 14 C -0.044 4.044 15 C -0.035 4.035 16 C -0.563 4.563 17 H 0.035 0.965 18 C -0.189 4.189 19 N -0.585 5.585 20 Si 0.774 3.226 21 H -0.185 1.185 22 H -0.208 1.208 23 H -0.175 1.175 24 C 0.289 3.711 25 O -0.439 6.439 26 N -0.149 5.149 27 C -0.022 4.022 28 N -0.164 5.164 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.197 0.803 33 H 0.170 0.830 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.122 0.878 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.101 0.899 42 H 0.116 0.884 43 H 0.036 0.964 44 H 0.097 0.903 45 H 0.070 0.930 46 H 0.027 0.973 47 H 0.030 0.970 48 H 0.042 0.958 49 H 0.074 0.926 50 H 0.060 0.940 51 H 0.099 0.901 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.329 18.573 -5.677 23.004 hybrid contribution -0.477 -1.392 -0.190 1.484 sum 11.852 17.181 -5.867 21.681 Atomic orbital electron populations 1.20223 0.85297 1.03213 1.03749 1.22923 0.98320 0.91183 0.99111 1.21421 0.90206 1.00354 1.16969 1.22045 0.98729 0.84377 1.02271 1.20103 0.90477 0.99979 0.82623 1.48518 1.42163 1.30031 1.13638 1.22466 0.97961 0.90616 0.91458 1.22741 0.99141 0.92608 0.99768 1.22420 0.97582 0.97208 0.87218 1.22339 0.90792 1.02857 0.98179 1.22511 0.95520 0.97497 0.99136 1.23358 0.92501 0.94604 0.99699 1.65071 1.06334 1.20139 1.29045 1.21882 0.92325 0.94844 0.95311 1.19423 0.94629 0.93864 0.95549 1.21164 1.14787 1.19347 1.00993 0.96454 1.25985 0.94547 0.95358 1.02971 1.70115 1.23233 1.25336 1.39788 0.85646 0.80149 0.77592 0.79167 1.18483 1.20774 1.17463 1.21661 0.78336 0.82018 0.89061 1.90639 1.54600 1.26961 1.71730 1.48475 1.04964 1.05294 1.56165 1.21716 0.83677 0.94755 1.02058 1.77398 0.87747 1.24991 1.26305 0.88427 0.93562 0.88408 0.80350 0.82973 0.89156 0.92879 0.85581 0.87759 0.85879 0.91880 0.86517 0.89936 0.88446 0.96361 0.90337 0.92996 0.97275 0.96975 0.95825 0.92578 0.93978 0.90118 0.87384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.45 71.24 0.74 -1.31 16 2 C 0.05 1.91 7.22 43.10 0.31 2.22 16 3 C -0.26 -8.05 10.65 21.99 0.23 -7.82 16 4 C 0.05 1.74 6.51 41.40 0.27 2.01 16 5 C 0.19 4.24 6.11 85.63 0.52 4.76 16 6 N -0.61 -14.87 2.91 -822.44 -2.40 -17.27 16 7 C 0.10 1.73 6.85 86.88 0.59 2.33 16 8 C -0.10 -1.75 6.33 31.45 0.20 -1.55 16 9 C 0.05 1.26 0.79 3.06 0.00 1.26 16 10 C -0.10 -2.11 6.18 31.29 0.19 -1.92 16 11 C -0.11 -2.38 7.07 31.89 0.23 -2.16 16 12 C 0.03 0.86 5.11 86.63 0.44 1.30 16 13 N -0.48 -16.26 5.03 -839.71 -4.22 -20.48 16 14 C 0.08 3.75 4.16 86.30 0.36 4.10 16 15 C 0.00 0.16 3.72 29.85 0.11 0.27 16 16 C -0.52 -33.17 9.66 25.60 0.25 -32.92 16 17 H 0.02 1.24 7.99 -2.91 -0.02 1.22 16 18 C 0.01 0.54 5.47 84.66 0.46 1.00 16 19 N -0.94 -63.23 13.96 21.45 0.30 -62.93 16 20 Si 0.95 47.31 27.47 68.60 1.88 49.20 16 21 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.25 -11.72 6.54 99.48 0.65 -11.07 16 24 C 0.50 15.31 4.46 87.61 0.39 15.70 16 25 O -0.56 -20.90 13.98 -3.01 -0.04 -20.94 16 26 N -0.37 -14.79 4.01 -356.02 -1.43 -16.22 16 27 C 0.12 4.55 10.11 127.77 1.29 5.84 16 28 N -0.34 -15.77 12.58 -47.38 -0.60 -16.37 16 29 H 0.10 2.40 8.14 -2.39 -0.02 2.39 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.18 3.95 8.06 -2.91 -0.02 3.92 16 33 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 2.01 7.04 -2.38 -0.02 1.99 16 35 H 0.05 1.23 7.46 -2.39 -0.02 1.21 16 36 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.78 8.07 -2.39 -0.02 1.77 16 38 H 0.12 1.13 7.57 -2.39 -0.02 1.11 16 39 H 0.06 1.45 7.44 -2.39 -0.02 1.43 16 40 H 0.12 1.49 7.40 -2.39 -0.02 1.47 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.02 0.71 7.98 -2.39 -0.02 0.69 16 44 H 0.08 2.63 7.72 -2.38 -0.02 2.61 16 45 H 0.05 2.42 7.08 -2.39 -0.02 2.40 16 46 H 0.01 0.46 5.18 -2.39 -0.01 0.45 16 47 H 0.01 0.63 5.86 -2.39 -0.01 0.62 16 48 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 49 H 0.27 16.49 8.31 -92.71 -0.77 15.72 16 50 H 0.04 1.92 6.60 -2.39 -0.02 1.91 16 51 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 52 H 0.11 3.42 6.67 -2.39 -0.02 3.40 16 Total: -1.00 -89.55 400.64 0.96 -88.59 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.85 Total: 23.29 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 6.60 Total: -6.88 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -8.34 Total: -133.26 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.04 Total: -20.94 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.20 kcal Total: -89.55 0.96 -88.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.504 kcal (2) G-P(sol) polarization free energy of solvation -89.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds