Wall clock time and date at job start Sat Apr 11 2020 08:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39870 * 125.89466 * 2 1 4 4 C 1.35323 * 107.91947 * 179.71375 * 3 2 1 5 5 C 1.50692 * 126.13358 * 180.26261 * 4 3 2 6 6 N 1.34947 * 107.74346 * 0.42209 * 4 3 2 7 7 C 1.46497 * 126.04010 * 179.83834 * 6 4 3 8 8 C 1.53007 * 109.47342 * 269.71738 * 7 6 4 9 9 C 1.50698 * 109.47134 * 179.97438 * 8 7 6 10 10 O 1.21280 * 120.00308 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99917 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00125 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.32546 * 50.49671 * 12 11 9 14 14 C 1.53029 * 109.17831 * 290.94025 * 12 11 9 15 15 C 1.53972 * 108.82684 * 295.22994 * 14 12 11 16 16 H 1.08996 * 112.99649 * 169.00474 * 15 14 12 17 17 C 1.56593 * 106.92144 * 293.90019 * 15 14 12 18 18 C 1.55169 * 99.83851 * 72.74987 * 17 15 14 19 19 H 1.09005 * 112.48382 * 163.44106 * 18 17 15 20 20 C 1.52990 * 109.32459 * 170.14066 * 12 11 9 21 21 N 1.47789 * 104.25401 * 41.32641 * 18 17 15 22 22 C 1.36938 * 125.85738 * 153.53276 * 21 18 17 23 23 H 1.08007 * 119.99881 * 359.97438 * 22 21 18 24 24 C 1.38807 * 120.00316 * 180.02562 * 22 21 18 25 25 N 1.31627 * 119.99595 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00356 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47175 * 179.97438 * 26 24 22 28 28 H 1.48493 * 109.47259 * 299.99949 * 26 24 22 29 29 H 1.48500 * 109.46811 * 60.00096 * 26 24 22 30 30 C 1.47078 * 108.28740 * 333.79180 * 21 18 17 31 31 N 1.30837 * 125.90208 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47675 * 270.00313 * 1 2 3 33 33 H 1.09006 * 109.47409 * 30.00537 * 1 2 3 34 34 H 1.09001 * 109.47070 * 150.00116 * 1 2 3 35 35 H 1.07993 * 126.04518 * 359.97438 * 3 2 1 36 36 H 1.09004 * 109.47327 * 270.19402 * 5 4 3 37 37 H 1.09004 * 109.47062 * 30.18767 * 5 4 3 38 38 H 1.08998 * 109.47679 * 150.18456 * 5 4 3 39 39 H 1.09005 * 109.47514 * 149.71726 * 7 6 4 40 40 H 1.09005 * 109.47078 * 29.71676 * 7 6 4 41 41 H 1.08996 * 109.46693 * 59.99418 * 8 7 6 42 42 H 1.08996 * 109.46824 * 299.99842 * 8 7 6 43 43 H 0.97005 * 120.00115 * 359.97438 * 11 9 8 44 44 H 1.08997 * 109.58417 * 55.03653 * 14 12 11 45 45 H 1.09007 * 109.57387 * 175.30071 * 14 12 11 46 46 H 1.09001 * 110.80153 * 315.42049 * 17 15 14 47 47 H 1.08994 * 112.14819 * 190.62638 * 17 15 14 48 48 H 1.08994 * 109.53116 * 305.10600 * 20 12 11 49 49 H 1.09005 * 109.59222 * 184.92515 * 20 12 11 50 50 H 0.97002 * 119.99490 * 179.97438 * 25 24 22 51 51 H 1.08997 * 109.97493 * 120.20084 * 30 21 18 52 52 H 1.08996 * 109.97918 * 241.49033 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3270 1.1331 0.0000 4 6 3.6142 0.7155 0.0064 5 6 4.8349 1.5989 0.0144 6 7 3.6087 -0.6340 0.0009 7 6 4.7898 -1.5007 0.0015 8 6 5.2019 -1.8023 -1.4409 9 6 6.4173 -2.6933 -1.4402 10 8 6.9061 -3.0514 -0.3896 11 7 6.9617 -3.0913 -2.6071 12 6 8.1428 -3.9579 -2.6065 13 1 7.9635 -4.8116 -1.9528 14 6 9.3462 -3.1672 -2.0885 15 6 9.6564 -2.0293 -3.0782 16 1 10.3751 -1.3091 -2.6873 17 6 10.1283 -2.7010 -4.4117 18 6 8.7730 -3.2579 -4.9221 19 1 8.8024 -3.5222 -5.9792 20 6 8.4060 -4.4560 -4.0289 21 7 7.8052 -2.1779 -4.6370 22 6 6.6372 -1.9482 -5.3139 23 1 6.3559 -2.5873 -6.1379 24 6 5.8153 -0.8934 -4.9418 25 7 6.1584 -0.1142 -3.9380 26 14 4.2223 -0.5795 -5.8656 27 1 3.5319 0.5960 -5.2768 28 1 4.5233 -0.3127 -7.2950 29 1 3.3449 -1.7729 -5.7589 30 6 8.3148 -1.3884 -3.5056 31 7 2.2742 -1.0598 0.0005 32 1 -0.3634 0.0001 1.0276 33 1 -0.3634 0.8900 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 1.9922 2.1598 -0.0004 36 1 5.1329 1.8162 -1.0114 37 1 4.6057 2.5308 0.5312 38 1 5.6492 1.0889 0.5290 39 1 4.5560 -2.4333 0.5151 40 1 5.6090 -0.9981 0.5159 41 1 5.4357 -0.8697 -1.9544 42 1 4.3828 -2.3048 -1.9552 43 1 6.5709 -2.8046 -3.4474 44 1 9.1135 -2.7471 -1.1100 45 1 10.2094 -3.8279 -2.0064 46 1 10.8353 -3.5059 -4.2106 47 1 10.5462 -1.9770 -5.1110 48 1 7.5097 -4.9393 -4.4175 49 1 9.2299 -5.1696 -4.0197 50 1 5.5842 0.6232 -3.6782 51 1 8.4571 -0.3513 -3.8094 52 1 7.6159 -1.4398 -2.6708 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325339842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:08:19 Heat of formation + Delta-G solvation = 89.770860 kcal Electronic energy + Delta-G solvation = -33295.242961 eV Core-core repulsion = 29298.007600 eV Total energy + Delta-G solvation = -3997.235361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.35090 -42.10642 -39.61112 -35.85958 -35.35325 -34.72846 -33.31514 -32.36912 -32.10816 -31.61230 -29.67957 -28.47401 -27.86661 -27.03765 -24.92395 -24.83921 -22.88504 -21.39193 -21.34529 -20.92579 -20.28265 -20.11523 -18.94487 -18.17101 -17.26919 -16.92688 -16.69180 -16.37228 -16.33435 -15.97915 -15.36751 -15.17147 -14.79302 -14.56935 -14.31169 -14.13968 -14.00153 -13.93581 -13.81031 -13.72585 -13.57362 -13.40102 -13.31480 -13.22490 -13.11480 -13.04947 -12.81400 -12.76080 -12.66565 -12.58342 -12.27658 -12.18671 -11.92210 -11.61289 -11.46121 -11.33144 -11.07956 -10.91779 -10.68158 -10.60269 -10.02756 -9.43190 -9.11580 -8.76894 -7.84316 -5.20083 0.89884 1.42856 1.47307 1.49454 1.50010 1.82791 1.84135 2.44406 2.71775 3.28379 3.54140 3.63895 3.74285 3.80296 3.85338 3.99286 4.00783 4.08916 4.12538 4.25038 4.35748 4.38346 4.46945 4.50605 4.52152 4.59866 4.66198 4.71935 4.77474 4.79241 4.81806 4.88212 4.91271 4.93387 4.98732 5.04354 5.10244 5.13189 5.14928 5.28407 5.34681 5.37798 5.40173 5.51448 5.57209 5.81267 5.82297 5.92837 5.98901 6.11011 6.20899 6.81264 7.00459 7.14420 7.61933 7.75223 8.41677 9.18726 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012235 B = 0.004316 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.010180 B = 6485.896005 C = 7625.444945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.058 3.942 3 C -0.291 4.291 4 C 0.083 3.917 5 C -0.091 4.091 6 N -0.375 5.375 7 C 0.162 3.838 8 C -0.153 4.153 9 C 0.513 3.487 10 O -0.598 6.598 11 N -0.693 5.693 12 C 0.150 3.850 13 H 0.060 0.940 14 C -0.112 4.112 15 C -0.118 4.118 16 H 0.084 0.916 17 C -0.114 4.114 18 C 0.139 3.861 19 H 0.071 0.929 20 C -0.130 4.130 21 N -0.607 5.607 22 C -0.250 4.250 23 H 0.081 0.919 24 C -0.033 4.033 25 N -0.913 5.913 26 Si 0.944 3.056 27 H -0.299 1.299 28 H -0.283 1.283 29 H -0.287 1.287 30 C 0.158 3.842 31 N -0.343 5.343 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.169 0.831 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.433 0.567 44 H 0.049 0.951 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.102 0.898 50 H 0.248 0.752 51 H -0.004 1.004 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 -0.424 5.091 5.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C -0.320 4.320 4 C -0.044 4.044 5 C -0.149 4.149 6 N -0.157 5.157 7 C 0.041 3.959 8 C -0.193 4.193 9 C 0.299 3.701 10 O -0.483 6.483 11 N -0.357 5.357 12 C 0.045 3.955 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.137 4.137 16 H 0.102 0.898 17 C -0.153 4.153 18 C 0.033 3.967 19 H 0.089 0.911 20 C -0.170 4.170 21 N -0.334 5.334 22 C -0.378 4.378 23 H 0.099 0.901 24 C -0.229 4.229 25 N -0.560 5.560 26 Si 0.775 3.225 27 H -0.226 1.226 28 H -0.209 1.209 29 H -0.213 1.213 30 C 0.033 3.967 31 N -0.166 5.166 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.186 0.814 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.123 0.877 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.287 0.713 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.120 0.880 50 H 0.058 0.942 51 H 0.015 0.985 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.886 -1.884 5.711 6.078 hybrid contribution -1.216 1.390 -1.131 2.165 sum -0.329 -0.494 4.580 4.618 Atomic orbital electron populations 1.20270 0.84330 1.03911 1.03977 1.22993 0.98561 0.90664 0.98525 1.21437 0.90682 1.00616 1.19225 1.21725 0.98771 0.84511 0.99410 1.20556 0.91995 0.98487 1.03847 1.48647 1.05015 1.04781 1.57252 1.21232 0.83627 0.94692 0.96388 1.22012 0.96288 1.03086 0.97951 1.20272 0.84875 0.80676 0.84231 1.90553 1.65413 1.59851 1.32465 1.47721 1.29178 1.48081 1.10724 1.20854 0.85443 0.91928 0.97230 0.92226 1.21953 0.97759 0.97464 0.97838 1.22972 0.97665 0.97215 0.95820 0.89786 1.23123 0.96206 1.00085 0.95837 1.21886 0.89343 0.88469 0.96974 0.91128 1.22431 1.02154 0.98801 0.93636 1.45110 1.20606 1.31849 1.35820 1.19273 0.95561 1.11149 1.11809 0.90113 1.25169 1.00525 0.97870 0.99370 1.70076 1.37777 1.19217 1.28923 0.85683 0.81348 0.76877 0.78635 1.22585 1.20911 1.21332 1.21791 0.92486 0.91477 0.90901 1.77223 0.87176 1.24485 1.27673 0.88982 0.88612 0.91449 0.81392 0.90459 0.87104 0.90892 0.89426 0.87723 0.86225 0.91433 0.71301 0.93236 0.89120 0.88552 0.92290 0.92786 0.87955 0.94184 0.98538 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.46 10.45 71.23 0.74 -0.72 16 2 C 0.06 1.86 7.22 43.10 0.31 2.17 16 3 C -0.29 -8.76 10.65 21.99 0.23 -8.52 16 4 C 0.08 2.70 6.93 41.40 0.29 2.99 16 5 C -0.09 -2.38 10.12 71.23 0.72 -1.66 16 6 N -0.38 -13.77 3.61 -334.68 -1.21 -14.98 16 7 C 0.16 5.94 5.54 86.38 0.48 6.42 16 8 C -0.15 -6.26 6.00 29.85 0.18 -6.08 16 9 C 0.51 21.68 6.07 87.66 0.53 22.21 16 10 O -0.60 -26.28 14.67 -3.03 -0.04 -26.32 16 11 N -0.69 -28.42 2.78 -442.51 -1.23 -29.65 16 12 C 0.15 5.21 2.74 45.00 0.12 5.34 16 13 H 0.06 2.07 8.05 -2.38 -0.02 2.05 16 14 C -0.11 -3.62 5.16 30.93 0.16 -3.46 16 15 C -0.12 -4.01 4.31 -8.63 -0.04 -4.05 16 16 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 17 C -0.11 -3.38 6.27 32.59 0.20 -3.17 16 18 C 0.14 4.75 4.24 45.78 0.19 4.94 16 19 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 20 C -0.13 -3.95 5.43 30.89 0.17 -3.78 16 21 N -0.61 -26.13 1.75 -664.49 -1.16 -27.29 16 22 C -0.25 -11.92 8.62 84.03 0.72 -11.20 16 23 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.03 -1.62 5.17 84.86 0.44 -1.18 16 25 N -0.91 -45.68 8.27 21.65 0.18 -45.50 16 26 Si 0.94 42.36 29.55 68.60 2.03 44.39 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 29 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 30 C 0.16 6.87 3.93 86.85 0.34 7.21 16 31 N -0.34 -13.02 12.58 -47.39 -0.60 -13.62 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.07 1.86 7.08 -2.39 -0.02 1.84 16 39 H 0.09 3.25 8.10 -2.38 -0.02 3.23 16 40 H 0.10 3.57 7.00 -2.38 -0.02 3.56 16 41 H 0.12 5.34 5.84 -2.39 -0.01 5.33 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.43 19.25 3.67 -92.71 -0.34 18.91 16 44 H 0.05 1.83 6.75 -2.39 -0.02 1.82 16 45 H 0.09 2.34 8.01 -2.38 -0.02 2.32 16 46 H 0.10 2.19 7.81 -2.39 -0.02 2.17 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.10 2.35 8.03 -2.38 -0.02 2.33 16 50 H 0.25 12.53 8.30 -92.71 -0.77 11.76 16 51 H 0.00 -0.18 7.41 -2.39 -0.02 -0.20 16 52 H 0.06 2.97 3.33 -6.70 -0.02 2.95 16 Total: -1.00 -60.84 390.03 4.34 -56.50 By element: Atomic # 1 Polarization: 48.44 SS G_CDS: 0.57 Total: 49.01 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.80 Total: 7.45 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -4.02 Total: -131.03 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.04 Total: -26.32 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -60.84 4.34 -56.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325339842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.268 kcal (2) G-P(sol) polarization free energy of solvation -60.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds