Wall clock time and date at job start Sat Apr 11 2020 08:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46890 * 2 1 4 4 C 1.53000 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47013 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47224 * 179.97438 * 5 4 3 7 7 C 1.46987 * 111.00209 * 170.00065 * 6 5 4 8 8 C 1.53413 * 109.59961 * 53.42829 * 7 6 5 9 9 N 1.46493 * 108.25498 * 49.52269 * 8 7 6 10 10 C 1.37300 * 128.58729 * 163.68136 * 9 8 7 11 11 C 1.46766 * 126.93076 * 0.12829 * 10 9 8 12 12 O 1.21684 * 120.00318 * 354.45949 * 11 10 9 13 13 N 1.34776 * 119.99610 * 174.46275 * 11 10 9 14 14 C 1.47066 * 136.06223 * 4.06724 * 13 11 10 15 15 C 1.53233 * 88.08657 * 207.21020 * 14 13 11 16 16 C 1.50707 * 114.32525 * 220.47053 * 15 14 13 17 17 H 1.08005 * 119.99710 * 93.75462 * 16 15 14 18 18 C 1.37871 * 120.00369 * 273.76060 * 16 15 14 19 19 N 1.31520 * 119.99722 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00282 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47058 * 89.99676 * 20 18 16 22 22 H 1.48498 * 109.47207 * 209.99570 * 20 18 16 23 23 H 1.48491 * 109.47029 * 329.99796 * 20 18 16 24 24 C 1.47070 * 136.05627 * 184.44840 * 13 11 10 25 25 C 1.36913 * 106.13148 * 180.15402 * 10 9 8 26 26 N 1.33529 * 107.85682 * 359.95594 * 25 10 9 27 27 C 1.30350 * 109.67027 * 359.96654 * 26 25 10 28 28 C 1.47299 * 111.00001 * 294.17068 * 6 5 4 29 29 H 1.09001 * 109.47064 * 60.00126 * 1 2 3 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47283 * 300.00211 * 1 2 3 32 32 H 1.09003 * 109.47126 * 239.99977 * 2 1 3 33 33 H 1.09001 * 109.47064 * 119.99874 * 2 1 3 34 34 H 1.09000 * 109.46797 * 60.00264 * 3 2 1 35 35 H 1.08995 * 109.46761 * 299.99703 * 3 2 1 36 36 H 1.08994 * 109.47283 * 59.99789 * 4 3 2 37 37 H 1.09001 * 109.47064 * 299.99874 * 4 3 2 38 38 H 1.09003 * 109.47252 * 59.99982 * 5 4 3 39 39 H 1.09001 * 109.47044 * 299.99814 * 5 4 3 40 40 H 1.09000 * 109.44846 * 173.47121 * 7 6 5 41 41 H 1.09007 * 109.44630 * 293.39309 * 7 6 5 42 42 H 1.09001 * 109.70110 * 169.21046 * 8 7 6 43 43 H 1.08994 * 109.70899 * 289.78727 * 8 7 6 44 44 H 1.09000 * 113.46613 * 321.94649 * 14 13 11 45 45 H 1.09006 * 113.46505 * 92.38031 * 14 13 11 46 46 H 1.08992 * 114.19930 * 87.73209 * 15 14 13 47 47 H 0.96996 * 120.00039 * 180.02562 * 19 18 16 48 48 H 1.09010 * 113.46616 * 267.62235 * 24 13 11 49 49 H 1.08994 * 113.47069 * 38.05669 * 24 13 11 50 50 H 1.07997 * 126.06710 * 179.97438 * 25 10 9 51 51 H 1.09000 * 109.73164 * 45.79941 * 28 6 5 52 52 H 1.08996 * 109.73412 * 166.48192 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 7 5.5489 2.8851 0.0025 7 6 6.0759 4.2366 -0.2351 8 6 5.4555 5.2150 0.7706 9 7 5.5891 4.6408 2.1116 10 6 5.4646 5.2666 3.3274 11 6 5.1604 6.6828 3.5632 12 8 5.0892 7.4543 2.6249 13 7 4.9599 7.1289 4.8191 14 6 5.0293 6.5539 6.1709 15 6 3.9935 7.5939 6.6108 16 6 4.2560 8.1964 7.9670 17 1 4.8078 9.1212 8.0494 18 6 3.7919 7.5671 9.1025 19 7 3.1196 6.4412 9.0022 20 14 4.1180 8.3136 10.7836 21 1 3.0082 9.2336 11.1403 22 1 4.2089 7.2315 11.7965 23 1 5.3959 9.0691 10.7502 24 6 4.5689 8.4033 5.4404 25 6 5.6822 4.3029 4.2753 26 7 5.9247 3.1527 3.6417 27 6 5.8705 3.3417 2.3531 28 6 6.0758 2.3219 1.2575 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8890 37 1 3.9329 0.9289 0.8909 38 1 3.7162 3.3987 0.8913 39 1 3.7170 3.3992 -0.8887 40 1 7.1592 4.2301 -0.1144 41 1 5.8258 4.5506 -1.2485 42 1 5.9796 6.1697 0.7256 43 1 4.4013 5.3632 0.5369 44 1 4.6633 5.5287 6.2258 45 1 6.0015 6.6810 6.6473 46 1 2.9589 7.2805 6.4716 47 1 2.7928 5.9986 9.8010 48 1 5.4172 9.0281 5.7202 49 1 3.8121 8.9475 4.8755 50 1 5.6611 4.4473 5.3453 51 1 5.5397 1.4052 1.5030 52 1 7.1390 2.1089 1.1475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278230124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:04 Heat of formation + Delta-G solvation = 42.517487 kcal Electronic energy + Delta-G solvation = -30845.602270 eV Core-core repulsion = 26846.317848 eV Total energy + Delta-G solvation = -3999.284421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.74722 -41.10945 -39.52377 -38.79117 -36.71256 -34.91105 -34.66648 -32.61602 -31.83371 -31.02213 -29.94272 -27.85995 -27.06669 -26.74643 -25.80086 -24.23774 -23.66876 -22.53852 -22.07461 -21.88128 -20.39354 -19.66897 -18.84546 -18.27011 -17.68838 -17.51612 -17.00984 -16.68464 -16.59213 -16.44273 -16.22293 -15.90212 -15.48351 -15.26423 -15.02081 -14.65261 -14.43691 -14.30675 -14.12271 -14.01173 -13.92680 -13.52178 -13.32512 -13.23184 -13.10939 -12.85638 -12.76092 -12.66801 -12.63787 -12.41895 -12.18814 -11.89713 -11.86330 -11.68492 -11.53046 -11.36565 -11.28272 -11.07257 -10.93456 -10.86130 -10.55872 -9.86562 -9.78380 -9.52610 -8.17418 -6.29082 0.09814 1.18025 1.47707 1.50140 1.59187 1.60575 1.99978 2.13054 2.45933 2.65222 3.03541 3.12008 3.24608 3.46736 3.69726 3.75443 3.92463 3.98179 4.01724 4.14651 4.15060 4.22631 4.23656 4.26495 4.32114 4.39227 4.46336 4.55392 4.56610 4.61509 4.64396 4.66361 4.71197 4.74006 4.81406 4.88909 4.90030 4.95367 5.01575 5.04908 5.09622 5.20666 5.29187 5.30713 5.41755 5.48579 5.56486 5.67042 5.74947 5.79595 5.91125 6.19636 6.63496 6.70106 6.80013 6.96841 7.41288 8.92522 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.002494 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.915289 B =11224.342904 C =12462.586372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.109 4.109 5 C 0.047 3.953 6 N -0.514 5.514 7 C 0.048 3.952 8 C 0.066 3.934 9 N -0.427 5.427 10 C -0.090 4.090 11 C 0.608 3.392 12 O -0.592 6.592 13 N -0.632 5.632 14 C 0.108 3.892 15 C 0.026 3.974 16 C -0.527 4.527 17 H 0.070 0.930 18 C 0.021 3.979 19 N -0.918 5.918 20 Si 0.959 3.041 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.263 1.263 24 C 0.114 3.886 25 C 0.029 3.971 26 N -0.509 5.509 27 C 0.200 3.800 28 C 0.137 3.863 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.009 0.991 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.040 0.960 47 H 0.265 0.735 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.182 0.818 51 H 0.122 0.878 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 -11.751 -20.910 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.156 4.156 4 C -0.146 4.146 5 C -0.081 4.081 6 N -0.234 5.234 7 C -0.080 4.080 8 C -0.057 4.057 9 N -0.108 5.108 10 C -0.206 4.206 11 C 0.399 3.601 12 O -0.476 6.476 13 N -0.364 5.364 14 C -0.014 4.014 15 C 0.007 3.993 16 C -0.565 4.565 17 H 0.088 0.912 18 C -0.179 4.179 19 N -0.555 5.555 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.008 4.008 25 C -0.125 4.125 26 N -0.228 5.228 27 C -0.064 4.064 28 C 0.007 3.993 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.113 0.887 40 H 0.119 0.881 41 H 0.154 0.846 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.081 0.919 50 H 0.199 0.801 51 H 0.140 0.860 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.275 -12.498 -21.715 25.268 hybrid contribution -0.670 1.946 1.838 2.760 sum 2.605 -10.552 -19.876 22.654 Atomic orbital electron populations 1.21799 0.95958 1.01949 1.01594 1.21500 0.95837 0.96211 1.02367 1.21556 0.95133 0.97435 1.01511 1.21568 0.94972 0.94894 1.03206 1.22318 0.86284 0.98784 1.00690 1.62581 1.08615 1.21134 1.31092 1.22821 1.01043 0.85016 0.99144 1.22981 1.03843 1.00319 0.78523 1.45239 1.50206 1.08906 1.06468 1.20447 1.18431 0.94678 0.87081 1.16477 0.76649 0.85442 0.81559 1.90697 1.56304 1.58360 1.42241 1.49603 1.65555 1.16852 1.04381 1.23556 1.01355 0.99619 0.76886 1.20165 0.94213 0.92412 0.92544 1.21176 1.35965 1.09002 0.90314 0.91175 1.25772 0.94114 0.95091 1.02936 1.70063 1.37122 1.17911 1.30449 0.85536 0.78906 0.77989 0.79123 1.20332 1.21204 1.18739 1.23320 0.98776 0.86956 0.91706 1.23222 1.01544 0.87815 0.99948 1.69874 1.21945 1.26911 1.04051 1.25284 1.01222 0.85216 0.94728 1.21444 1.04423 0.93156 0.80264 0.92342 0.92114 0.93740 0.90772 0.92486 0.94105 0.91208 0.89345 0.92277 0.97290 0.88686 0.88147 0.84623 0.88708 0.89829 0.91942 0.89433 0.94216 0.92626 0.89101 0.91906 0.80134 0.85986 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.12 -1.61 5.93 30.60 0.18 -1.43 16 3 C -0.12 -1.73 5.21 30.60 0.16 -1.57 16 4 C -0.11 -1.50 5.17 30.59 0.16 -1.34 16 5 C 0.05 0.75 4.02 86.30 0.35 1.09 16 6 N -0.51 -7.62 4.97 -897.87 -4.46 -12.08 16 7 C 0.05 0.68 5.96 86.43 0.52 1.19 16 8 C 0.07 1.54 5.51 86.52 0.48 2.02 16 9 N -0.43 -12.97 2.90 -500.97 -1.45 -14.42 16 10 C -0.09 -3.37 6.94 40.21 0.28 -3.09 16 11 C 0.61 25.44 8.04 86.47 0.69 26.13 16 12 O -0.59 -26.45 16.27 -4.30 -0.07 -26.52 16 13 N -0.63 -26.50 3.69 -863.56 -3.19 -29.69 16 14 C 0.11 4.59 6.70 83.08 0.56 5.15 16 15 C 0.03 1.23 3.77 -11.29 -0.04 1.18 16 16 C -0.53 -26.36 8.82 25.60 0.23 -26.14 16 17 H 0.07 3.37 7.81 -2.91 -0.02 3.34 16 18 C 0.02 1.10 5.46 84.65 0.46 1.56 16 19 N -0.92 -50.28 13.26 21.45 0.28 -50.00 16 20 Si 0.96 40.67 29.54 68.60 2.03 42.70 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 22 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.11 4.71 8.19 83.17 0.68 5.39 16 25 C 0.03 1.06 11.00 84.12 0.93 1.98 16 26 N -0.51 -17.34 11.19 -186.56 -2.09 -19.43 16 27 C 0.20 5.59 6.98 138.28 0.97 6.55 16 28 C 0.14 2.43 6.07 85.60 0.52 2.95 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.91 6.30 -2.39 -0.02 0.89 16 38 H 0.01 0.20 6.24 -2.39 -0.01 0.19 16 39 H 0.09 1.25 8.08 -2.39 -0.02 1.23 16 40 H 0.10 1.29 8.08 -2.39 -0.02 1.27 16 41 H 0.14 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.09 2.46 7.38 -2.39 -0.02 2.44 16 43 H 0.08 2.01 7.21 -2.39 -0.02 1.99 16 44 H 0.06 2.70 6.18 -2.39 -0.01 2.68 16 45 H 0.09 3.58 8.10 -2.38 -0.02 3.56 16 46 H 0.04 2.09 8.11 -2.39 -0.02 2.08 16 47 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 48 H 0.09 3.50 8.10 -2.38 -0.02 3.48 16 49 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.18 6.68 5.26 -2.91 -0.02 6.66 16 51 H 0.12 1.99 5.99 -2.39 -0.01 1.97 16 52 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -64.70 407.55 -0.22 -64.92 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.91 Total: 24.24 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 7.82 Total: 20.28 kcal Atomic # 7 Polarization: -114.71 SS G_CDS: -10.90 Total: -125.62 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.07 Total: -26.52 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -64.70 -0.22 -64.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278230124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.435 kcal (2) G-P(sol) polarization free energy of solvation -64.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds