Wall clock time and date at job start Sat Apr 11 2020 08:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47318 * 2 1 4 4 C 1.52989 * 109.47324 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47214 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.46813 * 180.02562 * 5 4 3 7 7 C 1.46950 * 110.99469 * 189.99988 * 6 5 4 8 8 C 1.53637 * 109.63506 * 164.23810 * 7 6 5 9 9 C 1.50420 * 107.73322 * 48.73690 * 8 7 6 10 10 C 1.35815 * 123.66317 * 344.72077 * 9 8 7 11 11 N 1.34106 * 107.17536 * 179.97438 * 10 9 8 12 12 H 0.97000 * 124.98051 * 179.90589 * 11 10 9 13 13 N 1.28920 * 110.03574 * 359.87914 * 11 10 9 14 14 C 1.32295 * 110.16627 * 359.92301 * 13 11 10 15 15 C 1.47716 * 126.69298 * 179.97438 * 14 13 11 16 16 O 1.21574 * 119.99541 * 180.02562 * 15 14 13 17 17 N 1.34777 * 120.00135 * 0.02633 * 15 14 13 18 18 C 1.47061 * 136.05655 * 359.62396 * 17 15 14 19 19 C 1.53239 * 88.08249 * 207.21015 * 18 17 15 20 20 C 1.50707 * 114.32789 * 220.47383 * 19 18 17 21 21 H 1.07994 * 119.99838 * 93.75534 * 20 19 18 22 22 C 1.37877 * 119.99634 * 273.76170 * 20 19 18 23 23 N 1.31508 * 120.00333 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99674 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47070 * 89.99560 * 24 22 20 26 26 H 1.48498 * 109.46970 * 209.99617 * 24 22 20 27 27 H 1.48500 * 109.46788 * 329.99583 * 24 22 20 28 28 C 1.47067 * 136.05621 * 180.02562 * 17 15 14 29 29 C 1.47548 * 110.95113 * 65.55493 * 6 5 4 30 30 H 1.09009 * 109.47008 * 300.00161 * 1 2 3 31 31 H 1.08992 * 109.46903 * 59.99987 * 1 2 3 32 32 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46881 * 239.99370 * 2 1 3 34 34 H 1.09005 * 109.47110 * 119.99824 * 2 1 3 35 35 H 1.09004 * 109.47297 * 59.99239 * 3 2 1 36 36 H 1.09005 * 109.46886 * 299.99961 * 3 2 1 37 37 H 1.09005 * 109.47448 * 59.99965 * 4 3 2 38 38 H 1.08996 * 109.47658 * 300.00084 * 4 3 2 39 39 H 1.09000 * 109.47084 * 60.00397 * 5 4 3 40 40 H 1.08992 * 109.47419 * 300.00017 * 5 4 3 41 41 H 1.08996 * 109.44543 * 44.18984 * 7 6 5 42 42 H 1.08994 * 109.44630 * 284.28866 * 7 6 5 43 43 H 1.08997 * 109.80793 * 289.17499 * 8 7 6 44 44 H 1.09001 * 109.85755 * 168.31895 * 8 7 6 45 45 H 1.08999 * 113.47211 * 321.94240 * 18 17 15 46 46 H 1.09000 * 113.46686 * 92.38236 * 18 17 15 47 47 H 1.09001 * 114.02145 * 87.71767 * 19 18 17 48 48 H 0.97001 * 120.00349 * 180.02562 * 23 22 20 49 49 H 1.09003 * 113.46250 * 267.62280 * 28 17 15 50 50 H 1.09003 * 113.46953 * 38.05329 * 28 17 15 51 51 H 1.09001 * 110.28035 * 56.01427 * 29 6 5 52 52 H 1.08994 * 109.23230 * 295.32936 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0000 6 7 5.5490 2.8849 0.0000 7 6 6.0756 4.2360 0.2376 8 6 7.5608 4.1511 0.6218 9 6 8.2431 3.2610 -0.3805 10 6 7.5784 2.4355 -1.2297 11 7 8.5005 1.8029 -1.9700 12 1 8.3069 1.1499 -2.6606 13 7 9.6820 2.1904 -1.6294 14 6 9.6060 3.0883 -0.6609 15 6 10.7368 3.7710 0.0005 16 8 10.5260 4.5802 0.8830 17 7 12.0020 3.4969 -0.3744 18 6 12.6474 2.6121 -1.3559 19 6 13.8791 2.5849 -0.4446 20 6 15.1946 2.6556 -1.1765 21 1 15.6760 3.6099 -1.3308 22 6 15.7833 1.5020 -1.6492 23 7 15.1972 0.3398 -1.4610 24 14 17.4136 1.5897 -2.5570 25 1 18.5290 1.4648 -1.5847 26 1 17.4908 0.4826 -3.5438 27 1 17.5168 2.8914 -3.2643 28 6 13.3449 3.9457 0.0229 29 6 6.0766 2.3140 -1.2542 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9338 0.9285 -0.8891 38 1 3.9330 0.9288 0.8908 39 1 3.7164 3.3993 0.8896 40 1 3.7171 3.3983 -0.8904 41 1 5.5176 4.7057 1.0476 42 1 5.9689 4.8317 -0.6689 43 1 7.6602 3.7267 1.6208 44 1 8.0070 5.1453 0.5970 45 1 12.1595 1.6423 -1.4529 46 1 12.8297 3.0909 -2.3180 47 1 13.8493 1.8072 0.3185 48 1 15.6116 -0.4719 -1.7932 49 1 13.7150 4.7836 -0.5679 50 1 13.4489 4.1074 1.0958 51 1 5.6780 2.8549 -2.1125 52 1 5.7937 1.2634 -1.3173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278231561.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:11 Heat of formation + Delta-G solvation = 44.219292 kcal Electronic energy + Delta-G solvation = -29934.917788 eV Core-core repulsion = 25935.707162 eV Total energy + Delta-G solvation = -3999.210626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.88914 -40.96319 -39.38050 -38.70659 -36.65493 -34.65591 -34.26032 -33.20580 -31.27340 -31.24107 -30.35483 -27.33159 -27.17253 -26.68359 -25.41797 -24.59388 -23.72424 -22.11969 -21.85221 -21.70307 -20.21983 -19.62685 -18.90620 -18.72272 -17.74866 -17.17090 -16.86326 -16.69369 -16.51656 -16.11837 -16.07518 -15.88929 -15.41342 -14.92266 -14.79727 -14.38841 -14.35118 -14.25528 -14.08216 -13.93063 -13.74337 -13.29776 -13.25966 -13.16796 -12.77647 -12.74714 -12.67136 -12.63699 -12.46552 -12.17816 -12.14846 -11.81758 -11.76996 -11.66675 -11.54693 -11.35668 -11.24859 -11.03861 -10.85838 -10.53580 -10.47951 -9.73061 -9.54066 -9.29652 -8.15360 -6.27330 0.47856 1.01821 1.48091 1.49030 1.59388 1.72804 2.05751 2.32026 2.47273 2.82886 3.14004 3.26754 3.55834 3.76612 3.96146 3.99684 4.06713 4.19626 4.23685 4.28631 4.30282 4.37597 4.38991 4.40768 4.48977 4.54880 4.59098 4.69401 4.70203 4.72105 4.79854 4.84700 4.91140 4.93748 4.97484 5.00208 5.04022 5.09110 5.10039 5.12800 5.19253 5.29147 5.38819 5.42902 5.50786 5.57689 5.58304 5.81412 5.95076 6.06090 6.17594 6.23380 6.74880 6.79086 6.81603 7.16230 7.42532 8.94935 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021029 B = 0.001883 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.160251 B =14868.516136 C =15821.453839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.115 4.115 5 C 0.060 3.940 6 N -0.548 5.548 7 C 0.065 3.935 8 C -0.033 4.033 9 C -0.162 4.162 10 C 0.021 3.979 11 N -0.351 5.351 12 H 0.461 0.539 13 N -0.272 5.272 14 C -0.026 4.026 15 C 0.611 3.389 16 O -0.577 6.577 17 N -0.635 5.635 18 C 0.129 3.871 19 C 0.022 3.978 20 C -0.528 4.528 21 H 0.070 0.930 22 C 0.020 3.980 23 N -0.920 5.920 24 Si 0.962 3.038 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.263 1.263 28 C 0.109 3.891 29 C 0.134 3.866 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.089 0.911 50 H 0.063 0.937 51 H 0.078 0.922 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.525 1.383 -2.076 29.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.273 5.273 7 C -0.063 4.063 8 C -0.072 4.072 9 C -0.172 4.172 10 C -0.108 4.108 11 N -0.067 5.067 12 H 0.309 0.691 13 N -0.109 5.109 14 C -0.183 4.183 15 C 0.400 3.600 16 O -0.457 6.457 17 N -0.367 5.367 18 C 0.006 3.994 19 C 0.002 3.998 20 C -0.566 4.566 21 H 0.088 0.912 22 C -0.181 4.181 23 N -0.558 5.558 24 Si 0.787 3.213 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.187 1.187 28 C -0.013 4.013 29 C 0.005 3.995 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.107 0.893 50 H 0.081 0.919 51 H 0.096 0.904 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -28.881 0.832 -1.845 28.951 hybrid contribution 0.446 0.231 -0.838 0.977 sum -28.434 1.063 -2.683 28.580 Atomic orbital electron populations 1.21784 0.95687 1.01708 1.01924 1.21530 0.96024 0.96953 1.01881 1.21531 0.94442 0.96827 1.02382 1.21593 0.95401 0.95746 1.02502 1.22204 0.84381 0.98008 1.02046 1.61998 1.09042 1.22582 1.33663 1.22166 0.93772 0.88942 1.01430 1.19988 0.94006 0.97300 0.95869 1.20131 0.90241 1.04016 1.02839 1.21428 0.95157 0.97888 0.96336 1.42970 1.01796 1.32435 1.29482 0.69051 1.74087 1.06355 1.14515 1.15976 1.21382 0.94441 1.02025 1.00471 1.16836 0.80399 0.80839 0.81925 1.90673 1.84482 1.37215 1.33335 1.49830 1.04150 1.43438 1.39326 1.23177 0.91408 0.91868 0.92960 1.20208 0.93104 0.91771 0.94678 1.21204 1.05218 0.93883 1.36253 0.91204 1.25815 1.00846 0.94898 0.96500 1.70088 1.40525 0.98590 1.46557 0.85490 0.79459 0.78008 0.78296 1.20138 1.21107 1.18747 1.23282 0.78149 0.99826 0.99999 1.20759 0.83506 1.02936 0.92253 0.92719 0.92516 0.92792 0.92069 0.92486 0.91814 0.91512 0.91567 0.92152 0.89746 0.93433 0.88204 0.93730 0.91384 0.91154 0.92649 0.90940 0.94551 0.92698 0.89319 0.91867 0.90391 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.13 -1.11 5.93 30.59 0.18 -0.93 16 3 C -0.11 -0.91 5.21 30.59 0.16 -0.75 16 4 C -0.11 -1.10 5.13 30.59 0.16 -0.95 16 5 C 0.06 0.64 4.96 86.30 0.43 1.06 16 6 N -0.55 -8.83 4.62 -897.61 -4.15 -12.98 16 7 C 0.06 1.17 5.53 86.51 0.48 1.65 16 8 C -0.03 -0.90 5.79 29.97 0.17 -0.73 16 9 C -0.16 -5.12 6.05 -20.03 -0.12 -5.24 16 10 C 0.02 0.50 7.23 41.65 0.30 0.80 16 11 N -0.35 -8.71 6.82 -48.17 -0.33 -9.04 16 12 H 0.46 7.28 8.96 -219.76 -1.97 5.31 16 13 N -0.27 -9.69 10.83 -48.75 -0.53 -10.22 16 14 C -0.03 -1.00 7.09 42.06 0.30 -0.70 16 15 C 0.61 27.68 8.08 86.75 0.70 28.38 16 16 O -0.58 -27.73 16.72 -3.95 -0.07 -27.80 16 17 N -0.64 -29.19 3.69 -862.50 -3.18 -32.37 16 18 C 0.13 6.08 7.35 83.09 0.61 6.69 16 19 C 0.02 1.10 3.77 -11.30 -0.04 1.06 16 20 C -0.53 -27.86 8.83 25.60 0.23 -27.64 16 21 H 0.07 3.53 7.81 -2.91 -0.02 3.50 16 22 C 0.02 1.04 5.46 84.66 0.46 1.51 16 23 N -0.92 -52.28 13.26 21.45 0.28 -52.00 16 24 Si 0.96 41.87 29.54 68.60 2.03 43.89 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 28 C 0.11 4.89 8.19 83.17 0.68 5.57 16 29 C 0.13 1.99 5.46 85.43 0.47 2.45 16 30 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.07 0.58 6.63 -2.38 -0.02 0.56 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 0.83 7.86 -2.39 -0.02 0.81 16 40 H 0.05 0.41 8.11 -2.39 -0.02 0.39 16 41 H 0.10 1.44 7.81 -2.39 -0.02 1.42 16 42 H 0.04 0.76 8.07 -2.39 -0.02 0.74 16 43 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 2.12 7.79 -2.39 -0.02 2.10 16 45 H 0.05 2.73 7.52 -2.39 -0.02 2.71 16 46 H 0.07 3.37 8.10 -2.39 -0.02 3.35 16 47 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 48 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 49 H 0.09 3.70 8.10 -2.39 -0.02 3.68 16 50 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 51 H 0.08 0.87 8.13 -2.39 -0.02 0.85 16 52 H 0.11 1.24 6.68 -2.39 -0.02 1.23 16 Total: -1.00 -69.75 416.18 -1.13 -70.88 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -1.06 Total: 17.92 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.87 Total: 11.72 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -7.91 Total: -116.61 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.07 Total: -27.80 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -69.75 -1.13 -70.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278231561.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.101 kcal (2) G-P(sol) polarization free energy of solvation -69.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds