Wall clock time and date at job start Sat Apr 11 2020 08:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 C 1.52998 * 109.47015 * 119.99904 * 2 1 3 5 5 C 1.52995 * 109.47176 * 65.86232 * 4 2 1 6 6 H 1.09004 * 109.46766 * 305.99106 * 5 4 2 7 7 C 1.50706 * 109.47256 * 185.99520 * 5 4 2 8 8 O 1.21281 * 119.99634 * 332.32979 * 7 5 4 9 9 N 1.34777 * 119.99917 * 152.32987 * 7 5 4 10 10 C 1.47622 * 120.90348 * 3.85335 * 9 7 5 11 11 C 1.53887 * 107.49917 * 132.49482 * 10 9 7 12 12 H 1.09001 * 112.09154 * 182.66312 * 11 10 9 13 13 C 1.54548 * 108.36735 * 307.00571 * 11 10 9 14 14 C 1.54277 * 104.84659 * 89.30008 * 13 11 10 15 15 C 1.54960 * 104.81453 * 359.81247 * 14 13 11 16 16 H 1.08995 * 112.26324 * 146.60828 * 15 14 13 17 17 C 1.47162 * 120.70776 * 184.54355 * 9 7 5 18 18 N 1.48305 * 107.20634 * 59.11338 * 11 10 9 19 19 C 1.36940 * 128.07469 * 106.10275 * 18 11 10 20 20 H 1.08000 * 120.00407 * 22.04410 * 19 18 11 21 21 C 1.38813 * 119.99564 * 202.05161 * 19 18 11 22 22 N 1.31615 * 120.00408 * 355.91428 * 21 19 18 23 23 Si 1.86799 * 119.99811 * 175.92691 * 21 19 18 24 24 H 1.48505 * 109.46858 * 269.99626 * 23 21 19 25 25 H 1.48503 * 109.47482 * 29.99197 * 23 21 19 26 26 H 1.48502 * 109.47489 * 149.99466 * 23 21 19 27 27 N 1.46494 * 109.47641 * 65.99118 * 5 4 2 28 28 C 1.36882 * 126.39557 * 65.93251 * 27 5 4 29 29 C 1.34679 * 106.81666 * 179.84399 * 28 27 5 30 30 N 1.34127 * 108.01713 * 0.42460 * 29 28 27 31 31 C 1.30496 * 109.25917 * 359.73161 * 30 29 28 32 32 H 1.09000 * 109.47285 * 299.99656 * 1 2 3 33 33 H 1.08996 * 109.47533 * 60.00046 * 1 2 3 34 34 H 1.09008 * 109.47036 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47285 * 240.00344 * 2 1 3 36 36 H 1.09004 * 109.47064 * 304.84259 * 3 2 1 37 37 H 1.09004 * 109.46977 * 64.83577 * 3 2 1 38 38 H 1.08994 * 109.47353 * 184.83796 * 3 2 1 39 39 H 1.08996 * 109.47198 * 305.85686 * 4 2 1 40 40 H 1.09002 * 109.46618 * 185.85642 * 4 2 1 41 41 H 1.08998 * 109.38308 * 13.38168 * 10 9 7 42 42 H 1.09000 * 110.63510 * 252.32050 * 10 9 7 43 43 H 1.09000 * 110.35999 * 208.14340 * 13 11 10 44 44 H 1.08996 * 110.36668 * 330.45844 * 13 11 10 45 45 H 1.09006 * 110.36351 * 118.84720 * 14 13 11 46 46 H 1.09000 * 110.36070 * 241.04614 * 14 13 11 47 47 H 1.09005 * 109.75337 * 107.60326 * 17 9 7 48 48 H 1.09002 * 109.79138 * 346.90022 * 17 9 7 49 49 H 0.96997 * 120.00523 * 180.02562 * 22 21 19 50 50 H 1.07994 * 126.59568 * 359.97438 * 28 27 5 51 51 H 1.07994 * 125.98423 * 180.11792 * 29 28 27 52 52 H 1.08000 * 125.65142 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6538 -2.1999 1.1778 6 1 0.5792 -2.2874 1.0169 7 6 2.0250 -2.8791 2.4709 8 8 2.9443 -2.4531 3.1374 9 7 1.3353 -3.9599 2.8865 10 6 0.2686 -4.5460 2.0511 11 6 0.4985 -6.0669 2.0068 12 1 -0.2252 -6.5725 1.3675 13 6 1.9546 -6.3264 1.5585 14 6 2.7727 -6.3495 2.8664 15 6 1.7339 -6.0962 3.9880 16 1 1.9826 -6.6248 4.9082 17 6 1.6186 -4.5754 4.1929 18 7 0.4510 -6.5588 3.4051 19 6 -0.5471 -7.2692 4.0169 20 1 -1.2483 -7.8366 3.4230 21 6 -0.6576 -7.2600 5.4006 22 7 0.2433 -6.6351 6.1287 23 14 -2.0848 -8.1350 6.2294 24 1 -3.2225 -7.1926 6.3806 25 1 -2.5068 -9.2910 5.3982 26 1 -1.6599 -8.6169 7.5682 27 7 2.3672 -2.8380 0.0687 28 6 3.7194 -3.0285 -0.0246 29 6 3.9452 -3.6512 -1.1973 30 7 2.7638 -3.8274 -1.8076 31 6 1.8141 -3.3428 -1.0551 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.6075 1.9808 -0.8435 37 1 1.7490 1.9307 0.9302 38 1 3.1264 1.4438 -0.0867 39 1 1.5935 -0.2715 2.1361 40 1 3.1249 -0.6313 1.3032 41 1 0.3308 -4.1345 1.0437 42 1 -0.7124 -4.3340 2.4763 43 1 2.0288 -7.2865 1.0478 44 1 2.3005 -5.5225 0.9089 45 1 3.2493 -7.3208 2.9986 46 1 3.5221 -5.5580 2.8589 47 1 0.8064 -4.3577 4.8866 48 1 2.5559 -4.1851 4.5893 49 1 0.1663 -6.6289 7.0956 50 1 4.4624 -2.7375 0.7031 51 1 4.9089 -3.9511 -1.5813 52 1 0.7604 -3.3453 -1.2918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317738497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:50 Heat of formation + Delta-G solvation = 49.083023 kcal Electronic energy + Delta-G solvation = -33448.628946 eV Core-core repulsion = 29449.629228 eV Total energy + Delta-G solvation = -3998.999718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.23863 -41.51910 -39.69682 -37.73592 -35.58038 -34.59024 -34.16605 -32.31494 -31.11391 -30.49392 -30.16442 -28.07581 -28.03931 -26.17871 -25.57542 -24.77760 -22.60639 -22.24327 -21.39991 -21.28661 -20.75791 -20.23517 -18.89379 -18.29201 -17.88057 -17.13549 -16.80899 -16.60749 -16.21128 -15.60309 -15.48242 -15.27368 -15.00608 -14.91432 -14.83098 -14.71884 -14.49211 -14.46380 -14.13506 -13.67167 -13.57188 -13.42533 -13.32952 -13.23094 -13.03904 -12.84297 -12.80181 -12.67737 -12.57812 -12.02371 -11.89107 -11.87043 -11.69703 -11.65586 -11.59876 -11.49948 -11.25665 -11.19057 -10.87031 -10.71161 -10.37683 -9.83728 -9.40387 -8.68810 -7.87719 -5.28562 1.01694 1.19368 1.49044 1.50483 1.57910 1.88044 2.15176 2.30378 2.49039 3.15669 3.31780 3.44226 3.46909 3.71911 3.88269 3.90321 3.99814 4.00733 4.07094 4.09187 4.16888 4.26649 4.26846 4.31789 4.52240 4.60611 4.63472 4.65314 4.72364 4.77904 4.78524 4.83905 4.90702 4.94286 4.98973 5.01331 5.03203 5.05023 5.05861 5.19473 5.26250 5.31312 5.34473 5.40942 5.45983 5.48551 5.57426 5.77085 5.81559 6.22882 6.26213 6.43134 6.99148 7.04281 7.17133 7.69542 8.50456 9.23027 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015128 B = 0.003685 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.375210 B = 7597.152064 C = 8210.511423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.104 4.104 5 C 0.130 3.870 6 H 0.143 0.857 7 C 0.500 3.500 8 O -0.573 6.573 9 N -0.582 5.582 10 C 0.100 3.900 11 C 0.132 3.868 12 H 0.093 0.907 13 C -0.105 4.105 14 C -0.126 4.126 15 C 0.167 3.833 16 H 0.082 0.918 17 C 0.129 3.871 18 N -0.602 5.602 19 C -0.236 4.236 20 H 0.080 0.920 21 C -0.046 4.046 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.287 1.287 25 H -0.271 1.271 26 H -0.301 1.301 27 N -0.439 5.439 28 C -0.051 4.051 29 C -0.038 4.038 30 N -0.517 5.517 31 C 0.190 3.810 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.048 0.952 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.248 0.752 50 H 0.164 0.836 51 H 0.178 0.822 52 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 12.523 -14.388 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.143 4.143 5 C 0.024 3.976 6 H 0.160 0.840 7 C 0.286 3.714 8 O -0.452 6.452 9 N -0.313 5.313 10 C -0.024 4.024 11 C 0.024 3.976 12 H 0.111 0.889 13 C -0.144 4.144 14 C -0.165 4.165 15 C 0.060 3.940 16 H 0.100 0.900 17 C 0.005 3.995 18 N -0.324 5.324 19 C -0.365 4.365 20 H 0.098 0.902 21 C -0.241 4.241 22 N -0.581 5.581 23 Si 0.799 3.201 24 H -0.214 1.214 25 H -0.196 1.196 26 H -0.227 1.227 27 N -0.124 5.124 28 C -0.184 4.184 29 C -0.184 4.184 30 N -0.235 5.235 31 C -0.092 4.092 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.076 0.924 49 H 0.057 0.943 50 H 0.181 0.819 51 H 0.195 0.805 52 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.955 12.316 -14.448 19.009 hybrid contribution -0.241 -0.252 2.136 2.165 sum 0.714 12.064 -12.312 17.252 Atomic orbital electron populations 1.21954 0.93782 1.02415 1.02790 1.21050 0.96891 0.96495 0.96278 1.21787 1.00772 0.95147 1.02411 1.21818 1.02308 0.89989 1.00161 1.21651 0.99738 0.94063 0.82146 0.84001 1.20974 0.82312 0.80276 0.87826 1.90668 1.30687 1.65231 1.58655 1.48369 1.35705 1.27792 1.19469 1.22676 0.89740 0.95776 0.94185 1.22142 0.96178 0.91854 0.87386 0.88936 1.22308 0.95373 1.00714 0.96032 1.22565 0.97559 0.99614 0.96799 1.21783 0.85309 0.91062 0.95884 0.90025 1.21966 0.99215 0.95270 0.83070 1.45278 1.16606 1.62385 1.08123 1.19257 1.05808 1.21611 0.89846 0.90250 1.25643 1.00336 1.00956 0.97183 1.69985 1.35755 1.47837 1.04532 0.85229 0.79419 0.78118 0.77377 1.21431 1.19621 1.22749 1.45341 1.06745 1.44414 1.15920 1.22720 0.85363 1.08293 1.02019 1.22450 0.97602 1.04610 0.93786 1.70302 0.99557 1.22346 1.31318 1.25578 1.01178 0.99049 0.83410 0.92296 0.91276 0.92029 0.91470 0.91430 0.92425 0.93237 0.90028 0.91518 0.88311 0.91494 0.92262 0.91772 0.93169 0.93338 0.93481 0.92422 0.94260 0.81851 0.80490 0.75074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.97 71.98 0.65 -1.17 16 2 C -0.09 -1.33 2.87 -10.79 -0.03 -1.36 16 3 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 4 C -0.10 -2.06 3.67 30.59 0.11 -1.95 16 5 C 0.13 2.81 1.67 44.25 0.07 2.89 16 6 H 0.14 2.38 4.82 -2.38 -0.01 2.37 16 7 C 0.50 15.73 6.63 87.66 0.58 16.31 16 8 O -0.57 -21.96 15.72 -3.03 -0.05 -22.01 16 9 N -0.58 -20.05 2.24 -813.80 -1.82 -21.88 16 10 C 0.10 3.01 5.63 86.46 0.49 3.49 16 11 C 0.13 4.64 4.27 45.47 0.19 4.83 16 12 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 13 C -0.11 -3.56 6.18 31.55 0.20 -3.36 16 14 C -0.13 -4.91 6.21 31.70 0.20 -4.71 16 15 C 0.17 7.59 3.14 45.61 0.14 7.73 16 16 H 0.08 4.37 6.37 -2.39 -0.02 4.35 16 17 C 0.13 5.58 5.82 86.55 0.50 6.08 16 18 N -0.60 -27.50 2.80 -635.92 -1.78 -29.28 16 19 C -0.24 -11.96 10.36 84.03 0.87 -11.09 16 20 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 21 C -0.05 -2.41 5.49 84.86 0.47 -1.94 16 22 N -0.93 -51.62 10.30 21.65 0.22 -51.39 16 23 Si 0.97 42.86 29.55 68.60 2.03 44.89 16 24 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 N -0.44 -9.42 1.94 -510.47 -0.99 -10.41 16 28 C -0.05 -1.25 10.69 83.09 0.89 -0.36 16 29 C -0.04 -0.92 11.87 83.53 0.99 0.07 16 30 N -0.52 -13.03 11.25 -200.31 -2.25 -15.28 16 31 C 0.19 3.81 11.53 180.26 2.08 5.89 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.64 6.47 -2.38 -0.02 0.63 16 35 H 0.07 1.12 7.43 -2.39 -0.02 1.11 16 36 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.55 7.83 -2.39 -0.02 1.53 16 41 H 0.10 2.16 5.14 -2.39 -0.01 2.14 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 2.04 7.86 -2.39 -0.02 2.02 16 45 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.05 1.88 7.85 -2.39 -0.02 1.87 16 47 H 0.05 2.34 7.79 -2.38 -0.02 2.32 16 48 H 0.06 2.59 7.09 -2.39 -0.02 2.57 16 49 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 50 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 51 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 52 H 0.23 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -63.87 399.69 5.31 -58.56 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.90 Total: 26.80 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 9.06 Total: 20.00 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -6.62 Total: -128.24 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -0.05 Total: -22.01 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -63.87 5.31 -58.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317738497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.642 kcal (2) G-P(sol) polarization free energy of solvation -63.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds