Wall clock time and date at job start Sat Apr 11 2020 08:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99930 * 2 1 4 4 N 1.46497 * 109.46983 * 127.64217 * 3 2 1 5 5 C 1.36461 * 127.13688 * 267.95403 * 4 3 2 6 6 N 1.38576 * 126.46981 * 0.02562 * 5 4 3 7 7 C 1.46383 * 110.99611 * 93.22533 * 6 5 4 8 8 C 1.53395 * 108.32545 * 189.53781 * 7 6 5 9 9 C 1.51752 * 108.09070 * 296.75984 * 8 7 6 10 10 C 1.50870 * 112.08003 * 56.01713 * 9 8 7 11 11 H 1.08995 * 109.57710 * 189.36725 * 10 9 8 12 12 C 1.53935 * 112.29389 * 67.38390 * 10 9 8 13 13 O 1.44022 * 104.43228 * 200.29934 * 12 10 9 14 14 C 1.43373 * 109.97882 * 23.55118 * 13 12 10 15 15 C 1.46771 * 110.99776 * 219.95647 * 6 5 4 16 16 H 1.08996 * 112.20172 * 307.34318 * 15 6 5 17 17 N 1.31218 * 107.05366 * 180.28128 * 5 4 3 18 18 N 1.28530 * 109.86056 * 359.56185 * 17 5 4 19 19 C 1.30297 * 110.05297 * 0.45044 * 18 17 5 20 20 C 1.50694 * 126.34496 * 179.69558 * 19 18 17 21 21 C 1.53003 * 109.46914 * 127.61946 * 20 19 18 22 22 C 1.52999 * 109.47258 * 247.61424 * 20 19 18 23 23 C 1.50697 * 109.47447 * 7.62038 * 20 19 18 24 24 H 1.07993 * 119.99888 * 359.97438 * 23 20 19 25 25 C 1.37882 * 120.00183 * 180.02562 * 23 20 19 26 26 N 1.31514 * 119.99978 * 359.97438 * 25 23 20 27 27 Si 1.86800 * 120.00103 * 179.97438 * 25 23 20 28 28 H 1.48504 * 109.47046 * 90.00018 * 27 25 23 29 29 H 1.48499 * 109.47026 * 209.99896 * 27 25 23 30 30 H 1.48505 * 109.46882 * 330.00161 * 27 25 23 31 31 H 1.07999 * 120.00143 * 359.97438 * 1 2 3 32 32 H 1.07995 * 119.99976 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.99713 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47292 * 7.64198 * 3 2 1 35 35 H 1.09002 * 109.47452 * 247.63860 * 3 2 1 36 36 H 1.09005 * 109.69251 * 309.24483 * 7 6 5 37 37 H 1.08998 * 109.69565 * 69.82666 * 7 6 5 38 38 H 1.08997 * 109.79131 * 55.93449 * 8 7 6 39 39 H 1.09004 * 109.78936 * 176.77107 * 8 7 6 40 40 H 1.08996 * 108.65698 * 295.38949 * 9 8 7 41 41 H 1.08994 * 108.84877 * 176.77371 * 9 8 7 42 42 H 1.09003 * 110.44475 * 319.03670 * 12 10 9 43 43 H 1.08997 * 110.44299 * 81.55908 * 12 10 9 44 44 H 1.09008 * 109.87521 * 240.85096 * 14 13 12 45 45 H 1.09000 * 109.99833 * 119.77722 * 14 13 12 46 46 H 1.08995 * 109.47487 * 69.07750 * 21 20 19 47 47 H 1.09006 * 109.47176 * 189.07535 * 21 20 19 48 48 H 1.09001 * 109.47138 * 309.07498 * 21 20 19 49 49 H 1.09005 * 109.46884 * 65.83470 * 22 20 19 50 50 H 1.08997 * 109.47460 * 185.83268 * 22 20 19 51 51 H 1.09003 * 109.47487 * 305.83620 * 22 20 19 52 52 H 0.97003 * 120.00267 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0381 1.3062 1.0937 5 6 2.8522 1.7729 2.3625 6 7 1.6947 2.3417 2.8695 7 6 0.8559 1.3333 3.5193 8 6 -0.5017 1.9705 3.8420 9 6 -0.2701 3.0963 4.8329 10 6 0.7233 4.1088 4.3189 11 1 0.9846 4.8024 5.1181 12 6 0.1836 4.8951 3.1105 13 8 1.3612 5.4205 2.4692 14 6 2.5016 4.6201 2.8074 15 6 2.0066 3.4808 3.7408 16 1 2.7263 3.2208 4.5170 17 7 3.9781 1.5863 3.0100 18 7 4.8404 1.0307 2.2355 19 6 4.3231 0.8402 1.0549 20 6 5.0134 0.2216 -0.1333 21 6 4.1522 -0.9144 -0.6890 22 6 5.2160 1.2840 -1.2155 23 6 6.3521 -0.3245 0.2915 24 1 6.6714 -0.2325 1.3190 25 6 7.1698 -0.9407 -0.6320 26 7 6.7812 -1.0523 -1.8834 27 14 8.8296 -1.6170 -0.1055 28 1 8.6738 -3.0285 0.3289 29 1 9.7755 -1.5524 -1.2484 30 1 9.3589 -0.8078 1.0216 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9354 -0.0004 34 1 1.3631 2.1290 0.1367 35 1 2.5838 1.4243 -0.9504 36 1 0.7137 0.4860 2.8484 37 1 1.3322 0.9973 4.4403 38 1 -0.9446 2.3760 2.9324 39 1 -1.1663 1.2232 4.2756 40 1 0.1044 2.6702 5.7636 41 1 -1.2195 3.5953 5.0271 42 1 -0.3543 4.2311 2.4337 43 1 -0.4634 5.7069 3.4427 44 1 3.2413 5.2296 3.3267 45 1 2.9399 4.1952 1.9043 46 1 3.2521 -0.4997 -1.1426 47 1 4.7176 -1.4646 -1.4412 48 1 3.8733 -1.5885 0.1210 49 1 5.9127 2.0411 -0.8555 50 1 5.6201 0.8160 -2.1131 51 1 4.2596 1.7520 -1.4489 52 1 7.3566 -1.4855 -2.5332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339709658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:51 Heat of formation + Delta-G solvation = 73.967985 kcal Electronic energy + Delta-G solvation = -33326.247052 eV Core-core repulsion = 29328.326426 eV Total energy + Delta-G solvation = -3997.920625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.41421 -40.51955 -36.99045 -36.33065 -35.24437 -34.08679 -32.36536 -31.29964 -31.16171 -28.63560 -27.88396 -26.57454 -25.96672 -25.27206 -24.92293 -23.23292 -22.50418 -21.84271 -20.49487 -20.26206 -19.14052 -18.81626 -17.61131 -16.32021 -16.16880 -15.96242 -15.77298 -15.28161 -15.13935 -14.80142 -14.75219 -14.51817 -14.22874 -13.80149 -13.58355 -13.44227 -13.25998 -12.82821 -12.54008 -12.34565 -12.28290 -11.87763 -11.66154 -11.60686 -11.48231 -11.35529 -11.08920 -10.94826 -10.92146 -10.76332 -10.67991 -10.60630 -10.53896 -10.20956 -10.08797 -9.95862 -9.77384 -9.54537 -9.51746 -9.46095 -8.92943 -8.67541 -8.38282 -7.94259 -6.03125 -4.08793 2.05502 2.42059 2.84704 3.33573 3.39900 3.47993 3.65710 3.75955 3.89482 4.11790 4.44430 4.47102 4.65971 4.77692 4.85572 4.87763 4.97734 4.98741 5.16317 5.26238 5.26557 5.32167 5.34940 5.41520 5.46024 5.53370 5.60331 5.61763 5.64112 5.69309 5.79113 5.83950 5.86536 5.93939 5.97475 6.07560 6.18790 6.47704 6.51117 6.54780 6.62359 6.67595 6.72126 6.74650 6.83686 6.94360 7.12153 7.22322 7.35192 7.61913 7.79911 7.82684 8.09320 8.31137 8.98046 9.52128 9.62106 11.00349 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.003572 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.769928 B = 7837.575263 C = 8392.885424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.169 4.169 3 C 0.139 3.861 4 N -0.467 5.467 5 C 0.310 3.690 6 N -0.454 5.454 7 C 0.066 3.934 8 C -0.115 4.115 9 C -0.109 4.109 10 C -0.116 4.116 11 H 0.090 0.910 12 C 0.064 3.936 13 O -0.383 6.383 14 C 0.065 3.935 15 C 0.074 3.926 16 H 0.092 0.908 17 N -0.323 5.323 18 N -0.288 5.288 19 C 0.245 3.755 20 C 0.146 3.854 21 C -0.140 4.140 22 C -0.128 4.128 23 C -0.491 4.491 24 H 0.076 0.924 25 C 0.063 3.937 26 N -0.894 5.894 27 Si 0.899 3.101 28 H -0.282 1.282 29 H -0.288 1.288 30 H -0.272 1.272 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.022 0.978 47 H 0.099 0.901 48 H 0.025 0.975 49 H 0.035 0.965 50 H 0.095 0.905 51 H 0.007 0.993 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.162 7.094 6.939 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.188 4.188 3 C 0.016 3.984 4 N -0.160 5.160 5 C -0.046 4.046 6 N -0.180 5.180 7 C -0.062 4.062 8 C -0.153 4.153 9 C -0.146 4.146 10 C -0.135 4.135 11 H 0.108 0.892 12 C -0.012 4.012 13 O -0.302 6.302 14 C -0.012 4.012 15 C -0.034 4.034 16 H 0.110 0.890 17 N -0.167 5.167 18 N -0.125 5.125 19 C -0.022 4.022 20 C 0.143 3.857 21 C -0.198 4.198 22 C -0.187 4.187 23 C -0.530 4.530 24 H 0.094 0.906 25 C -0.138 4.138 26 N -0.534 5.534 27 Si 0.727 3.273 28 H -0.208 1.208 29 H -0.214 1.214 30 H -0.196 1.196 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.041 0.959 47 H 0.118 0.882 48 H 0.044 0.956 49 H 0.054 0.946 50 H 0.114 0.886 51 H 0.026 0.974 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.334 7.416 7.413 20.259 hybrid contribution 0.305 -0.923 -0.068 0.974 sum -17.030 6.494 7.345 19.650 Atomic orbital electron populations 1.23830 0.95486 1.01918 1.00244 1.23487 0.96253 0.99036 0.99979 1.20958 0.90807 0.96716 0.89935 1.46342 1.12651 1.47266 1.09768 1.22005 0.93847 1.04131 0.84634 1.58025 1.12742 1.08919 1.38342 1.22141 0.92654 0.93308 0.98069 1.21477 0.96182 0.97742 0.99919 1.20718 0.98800 0.96033 0.99076 1.22089 0.94867 0.97830 0.98728 0.89219 1.23241 0.88528 0.96837 0.92581 1.88450 1.16555 1.52815 1.72382 1.23365 0.88457 0.90807 0.98578 1.23105 0.96771 0.89427 0.94088 0.89024 1.74506 0.98983 1.17282 1.25965 1.74116 1.22546 1.15819 1.00037 1.26209 0.80008 0.97052 0.98958 1.16923 0.93384 0.91192 0.84208 1.22148 0.97451 0.99166 1.01068 1.21902 0.97193 0.97680 1.01910 1.21072 0.99199 1.35929 0.96751 0.90561 1.24862 0.98309 0.95783 0.94806 1.69785 1.37173 1.44340 1.02061 0.86461 0.83391 0.79275 0.78191 1.20787 1.21358 1.19639 0.88458 0.88136 0.85740 0.88706 0.87462 0.90296 0.93502 0.90703 0.90637 0.91562 0.91184 0.91526 0.90229 0.91012 0.90947 0.95915 0.88233 0.95623 0.94551 0.88645 0.97377 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 14.32 29.01 0.42 -1.47 16 2 C -0.17 -2.29 8.52 -36.03 -0.31 -2.60 16 3 C 0.14 2.08 5.66 -5.20 -0.03 2.05 16 4 N -0.47 -8.64 2.79 -115.37 -0.32 -8.97 16 5 C 0.31 5.58 5.36 -318.87 -1.71 3.87 16 6 N -0.45 -6.32 4.02 -165.11 -0.66 -6.98 16 7 C 0.07 0.78 5.44 -3.90 -0.02 0.76 16 8 C -0.12 -0.96 5.96 -27.16 -0.16 -1.13 16 9 C -0.11 -0.84 5.32 -28.43 -0.15 -0.99 16 10 C -0.12 -1.10 2.98 -90.61 -0.27 -1.37 16 11 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 12 C 0.06 0.65 7.09 37.64 0.27 0.92 16 13 O -0.38 -5.25 11.38 -35.23 -0.40 -5.65 16 14 C 0.06 0.92 7.24 38.42 0.28 1.20 16 15 C 0.07 0.96 2.91 -65.93 -0.19 0.76 16 16 H 0.09 1.30 7.77 -51.93 -0.40 0.90 16 17 N -0.32 -6.95 11.58 30.32 0.35 -6.60 16 18 N -0.29 -7.00 11.01 32.99 0.36 -6.64 16 19 C 0.24 5.50 6.33 -154.01 -0.97 4.53 16 20 C 0.15 3.44 0.49 -156.82 -0.08 3.36 16 21 C -0.14 -3.07 6.87 37.16 0.26 -2.81 16 22 C -0.13 -2.91 8.07 37.16 0.30 -2.61 16 23 C -0.49 -13.15 7.91 -34.44 -0.27 -13.43 16 24 H 0.08 2.18 6.96 -52.49 -0.37 1.81 16 25 C 0.06 1.65 5.12 -17.82 -0.09 1.56 16 26 N -0.89 -23.41 9.40 55.43 0.52 -22.89 16 27 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 31 H 0.10 0.91 7.85 -52.49 -0.41 0.50 16 32 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.92 5.83 -52.48 -0.31 1.61 16 34 H 0.09 1.28 7.81 -51.93 -0.41 0.87 16 35 H 0.11 1.67 4.99 -51.93 -0.26 1.41 16 36 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.63 6.90 -51.93 -0.36 0.27 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.68 6.70 -51.93 -0.35 0.33 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.96 8.14 -51.92 -0.42 0.53 16 45 H 0.07 1.22 6.96 -51.93 -0.36 0.86 16 46 H 0.02 0.42 4.52 -51.93 -0.23 0.19 16 47 H 0.10 2.41 5.88 -51.93 -0.31 2.11 16 48 H 0.02 0.55 7.73 -51.93 -0.40 0.15 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 2.31 6.25 -51.93 -0.32 1.99 16 51 H 0.01 0.15 5.84 -51.93 -0.30 -0.15 16 52 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -29.41 388.17 -10.21 -39.62 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -8.15 Total: 3.44 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.74 Total: -7.38 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.25 Total: -52.07 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.40 Total: -5.65 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.41 -10.21 -39.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339709658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.585 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds