Wall clock time and date at job start Sat Apr 11 2020 08:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99930 * 2 1 4 4 N 1.46497 * 109.46983 * 127.64217 * 3 2 1 5 5 C 1.36461 * 127.13688 * 267.95403 * 4 3 2 6 6 N 1.38576 * 126.46981 * 0.02562 * 5 4 3 7 7 C 1.46383 * 110.99611 * 93.22533 * 6 5 4 8 8 C 1.53395 * 108.32545 * 189.53781 * 7 6 5 9 9 C 1.51752 * 108.09070 * 296.75984 * 8 7 6 10 10 C 1.50870 * 112.08003 * 56.01713 * 9 8 7 11 11 H 1.08995 * 109.57710 * 189.36725 * 10 9 8 12 12 C 1.53935 * 112.29389 * 67.38390 * 10 9 8 13 13 O 1.44022 * 104.43228 * 200.29934 * 12 10 9 14 14 C 1.43373 * 109.97882 * 23.55118 * 13 12 10 15 15 C 1.46771 * 110.99776 * 219.95647 * 6 5 4 16 16 H 1.08996 * 112.20172 * 307.34318 * 15 6 5 17 17 N 1.31218 * 107.05366 * 180.28128 * 5 4 3 18 18 N 1.28530 * 109.86056 * 359.56185 * 17 5 4 19 19 C 1.30297 * 110.05297 * 0.45044 * 18 17 5 20 20 C 1.50694 * 126.34496 * 179.69558 * 19 18 17 21 21 C 1.53003 * 109.46914 * 127.61946 * 20 19 18 22 22 C 1.52999 * 109.47258 * 247.61424 * 20 19 18 23 23 C 1.50697 * 109.47447 * 7.62038 * 20 19 18 24 24 H 1.07993 * 119.99888 * 359.97438 * 23 20 19 25 25 C 1.37882 * 120.00183 * 180.02562 * 23 20 19 26 26 N 1.31514 * 119.99978 * 359.97438 * 25 23 20 27 27 Si 1.86800 * 120.00103 * 179.97438 * 25 23 20 28 28 H 1.48504 * 109.47046 * 90.00018 * 27 25 23 29 29 H 1.48499 * 109.47026 * 209.99896 * 27 25 23 30 30 H 1.48505 * 109.46882 * 330.00161 * 27 25 23 31 31 H 1.07999 * 120.00143 * 359.97438 * 1 2 3 32 32 H 1.07995 * 119.99976 * 179.97438 * 1 2 3 33 33 H 1.08004 * 119.99713 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47292 * 7.64198 * 3 2 1 35 35 H 1.09002 * 109.47452 * 247.63860 * 3 2 1 36 36 H 1.09005 * 109.69251 * 309.24483 * 7 6 5 37 37 H 1.08998 * 109.69565 * 69.82666 * 7 6 5 38 38 H 1.08997 * 109.79131 * 55.93449 * 8 7 6 39 39 H 1.09004 * 109.78936 * 176.77107 * 8 7 6 40 40 H 1.08996 * 108.65698 * 295.38949 * 9 8 7 41 41 H 1.08994 * 108.84877 * 176.77371 * 9 8 7 42 42 H 1.09003 * 110.44475 * 319.03670 * 12 10 9 43 43 H 1.08997 * 110.44299 * 81.55908 * 12 10 9 44 44 H 1.09008 * 109.87521 * 240.85096 * 14 13 12 45 45 H 1.09000 * 109.99833 * 119.77722 * 14 13 12 46 46 H 1.08995 * 109.47487 * 69.07750 * 21 20 19 47 47 H 1.09006 * 109.47176 * 189.07535 * 21 20 19 48 48 H 1.09001 * 109.47138 * 309.07498 * 21 20 19 49 49 H 1.09005 * 109.46884 * 65.83470 * 22 20 19 50 50 H 1.08997 * 109.47460 * 185.83268 * 22 20 19 51 51 H 1.09003 * 109.47487 * 305.83620 * 22 20 19 52 52 H 0.97003 * 120.00267 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 3.0381 1.3062 1.0937 5 6 2.8522 1.7729 2.3625 6 7 1.6947 2.3417 2.8695 7 6 0.8559 1.3333 3.5193 8 6 -0.5017 1.9705 3.8420 9 6 -0.2701 3.0963 4.8329 10 6 0.7233 4.1088 4.3189 11 1 0.9846 4.8024 5.1181 12 6 0.1836 4.8951 3.1105 13 8 1.3612 5.4205 2.4692 14 6 2.5016 4.6201 2.8074 15 6 2.0066 3.4808 3.7408 16 1 2.7263 3.2208 4.5170 17 7 3.9781 1.5863 3.0100 18 7 4.8404 1.0307 2.2355 19 6 4.3231 0.8402 1.0549 20 6 5.0134 0.2216 -0.1333 21 6 4.1522 -0.9144 -0.6890 22 6 5.2160 1.2840 -1.2155 23 6 6.3521 -0.3245 0.2915 24 1 6.6714 -0.2325 1.3190 25 6 7.1698 -0.9407 -0.6320 26 7 6.7812 -1.0523 -1.8834 27 14 8.8296 -1.6170 -0.1055 28 1 8.6738 -3.0285 0.3289 29 1 9.7755 -1.5524 -1.2484 30 1 9.3589 -0.8078 1.0216 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9353 -0.0004 33 1 1.8500 -0.9354 -0.0004 34 1 1.3631 2.1290 0.1367 35 1 2.5838 1.4243 -0.9504 36 1 0.7137 0.4860 2.8484 37 1 1.3322 0.9973 4.4403 38 1 -0.9446 2.3760 2.9324 39 1 -1.1663 1.2232 4.2756 40 1 0.1044 2.6702 5.7636 41 1 -1.2195 3.5953 5.0271 42 1 -0.3543 4.2311 2.4337 43 1 -0.4634 5.7069 3.4427 44 1 3.2413 5.2296 3.3267 45 1 2.9399 4.1952 1.9043 46 1 3.2521 -0.4997 -1.1426 47 1 4.7176 -1.4646 -1.4412 48 1 3.8733 -1.5885 0.1210 49 1 5.9127 2.0411 -0.8555 50 1 5.6201 0.8160 -2.1131 51 1 4.2596 1.7520 -1.4489 52 1 7.3566 -1.4855 -2.5332 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339709658.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:48 Heat of formation + Delta-G solvation = 58.193693 kcal Electronic energy + Delta-G solvation = -33326.931076 eV Core-core repulsion = 29328.326426 eV Total energy + Delta-G solvation = -3998.604650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.94762 -41.51585 -38.12682 -37.81531 -36.70878 -35.11005 -33.70285 -33.02655 -32.21054 -30.01150 -29.03101 -27.82065 -27.78614 -27.13265 -25.96793 -24.14543 -23.79333 -23.30825 -21.74276 -21.57962 -20.38053 -19.91846 -18.81078 -17.91379 -17.49896 -17.25604 -16.99664 -16.79594 -16.39524 -16.04753 -15.89715 -15.62819 -15.29850 -15.13239 -14.77982 -14.57147 -14.53485 -14.27879 -13.76308 -13.54949 -13.40387 -13.26914 -13.15047 -13.00816 -12.72679 -12.60799 -12.59268 -12.50664 -12.36262 -12.28708 -12.02837 -11.88390 -11.83264 -11.69426 -11.58680 -11.44288 -11.36138 -10.97948 -10.69894 -10.52564 -10.47991 -10.38932 -10.14202 -9.46076 -8.05689 -6.16618 0.87462 1.03825 1.41765 1.44004 1.54212 1.61537 1.99240 2.46644 2.67453 2.85408 3.20090 3.22151 3.64035 3.70231 3.73131 3.79140 3.87680 3.98223 4.04603 4.12692 4.17315 4.28021 4.35217 4.44102 4.45741 4.52813 4.54978 4.63051 4.69681 4.74257 4.78038 4.80363 4.87921 4.90309 4.93592 4.95130 4.98227 5.07079 5.11348 5.17806 5.24777 5.26179 5.40732 5.47271 5.56819 5.62686 5.69524 5.72191 5.81519 5.94730 5.97315 6.08194 6.31946 6.41282 6.86544 7.48962 7.96058 8.95477 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016353 B = 0.003572 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.769928 B = 7837.575263 C = 8392.885424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.205 4.205 3 C 0.137 3.863 4 N -0.462 5.462 5 C 0.336 3.664 6 N -0.443 5.443 7 C 0.062 3.938 8 C -0.105 4.105 9 C -0.107 4.107 10 C -0.104 4.104 11 H 0.104 0.896 12 C 0.060 3.940 13 O -0.399 6.399 14 C 0.069 3.931 15 C 0.069 3.931 16 H 0.074 0.926 17 N -0.359 5.359 18 N -0.333 5.333 19 C 0.227 3.773 20 C 0.142 3.858 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.513 4.513 24 H 0.048 0.952 25 C 0.032 3.968 26 N -0.901 5.901 27 Si 0.946 3.054 28 H -0.278 1.278 29 H -0.277 1.277 30 H -0.283 1.283 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.014 0.986 49 H 0.015 0.985 50 H 0.080 0.920 51 H 0.035 0.965 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.264 7.840 7.386 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.224 4.224 3 C 0.016 3.984 4 N -0.154 5.154 5 C -0.021 4.021 6 N -0.170 5.170 7 C -0.065 4.065 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.122 4.122 11 H 0.122 0.878 12 C -0.016 4.016 13 O -0.319 6.319 14 C -0.008 4.008 15 C -0.039 4.039 16 H 0.092 0.908 17 N -0.203 5.203 18 N -0.170 5.170 19 C -0.042 4.042 20 C 0.139 3.861 21 C -0.180 4.180 22 C -0.174 4.174 23 C -0.552 4.552 24 H 0.067 0.933 25 C -0.168 4.168 26 N -0.540 5.540 27 Si 0.772 3.228 28 H -0.204 1.204 29 H -0.202 1.202 30 H -0.209 1.209 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.033 0.967 49 H 0.034 0.966 50 H 0.098 0.902 51 H 0.054 0.946 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.462 8.157 7.847 24.264 hybrid contribution 1.428 -1.091 -0.167 1.805 sum -20.034 7.066 7.681 22.590 Atomic orbital electron populations 1.24121 0.94171 1.03850 0.94955 1.23175 0.97235 0.97134 1.04823 1.21179 0.90340 0.98554 0.88295 1.46449 1.11949 1.46335 1.10705 1.22449 0.94115 1.01294 0.84246 1.58347 1.10498 1.09303 1.38848 1.22296 0.94231 0.93017 0.96936 1.21492 0.93714 0.98343 1.00702 1.20755 0.99556 0.95409 0.98693 1.22110 0.93191 0.98142 0.98806 0.87812 1.23507 0.87504 0.98001 0.92571 1.88437 1.17350 1.52935 1.73151 1.23187 0.89065 0.91357 0.97193 1.23174 0.98815 0.88562 0.93344 0.90769 1.74396 1.00191 1.19117 1.26596 1.73987 1.24514 1.17257 1.01291 1.25806 0.81697 0.98373 0.98281 1.16825 0.92538 0.91787 0.84913 1.21924 0.97957 0.98184 0.99916 1.21720 0.98021 0.96904 1.00765 1.21158 1.01320 1.37048 0.95693 0.93330 1.25347 1.00490 0.95960 0.94984 1.69856 1.37720 1.44196 1.02204 0.85749 0.80746 0.78567 0.77690 1.20373 1.20231 1.20860 0.86212 0.86239 0.88026 0.86705 0.88371 0.91071 0.94906 0.89818 0.88245 0.91354 0.88050 0.91085 0.87484 0.90975 0.94368 0.92928 0.90485 0.96657 0.96565 0.90160 0.94604 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 14.32 67.78 0.97 -1.35 16 2 C -0.20 -5.20 8.52 25.64 0.22 -4.98 16 3 C 0.14 3.99 5.66 85.63 0.48 4.48 16 4 N -0.46 -17.41 2.79 -518.92 -1.45 -18.86 16 5 C 0.34 12.34 5.36 260.11 1.39 13.74 16 6 N -0.44 -11.88 4.02 -676.29 -2.72 -14.61 16 7 C 0.06 1.35 5.44 86.53 0.47 1.83 16 8 C -0.10 -1.30 5.96 30.32 0.18 -1.12 16 9 C -0.11 -1.16 5.32 29.49 0.16 -1.00 16 10 C -0.10 -1.63 2.98 -10.79 -0.03 -1.66 16 11 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 12 C 0.06 0.99 7.09 72.30 0.51 1.50 16 13 O -0.40 -10.26 11.38 -148.98 -1.69 -11.96 16 14 C 0.07 1.96 7.24 72.80 0.53 2.49 16 15 C 0.07 1.72 2.91 46.14 0.13 1.86 16 16 H 0.07 2.14 7.77 -2.39 -0.02 2.12 16 17 N -0.36 -16.24 11.58 -58.00 -0.67 -16.91 16 18 N -0.33 -17.21 11.01 -49.54 -0.55 -17.75 16 19 C 0.23 10.70 6.33 137.64 0.87 11.57 16 20 C 0.14 6.99 0.49 -53.68 -0.03 6.96 16 21 C -0.12 -5.47 6.87 71.98 0.49 -4.97 16 22 C -0.12 -5.41 8.07 71.98 0.58 -4.83 16 23 C -0.51 -28.90 7.91 25.60 0.20 -28.70 16 24 H 0.05 2.96 6.96 -2.91 -0.02 2.94 16 25 C 0.03 1.71 5.12 84.66 0.43 2.15 16 26 N -0.90 -48.11 9.40 21.45 0.20 -47.90 16 27 Si 0.95 44.71 29.54 68.60 2.03 46.73 16 28 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 29 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 30 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 31 H 0.12 1.60 7.85 -2.91 -0.02 1.57 16 32 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.10 3.09 5.83 -2.91 -0.02 3.07 16 34 H 0.11 2.82 7.81 -2.39 -0.02 2.81 16 35 H 0.10 2.98 4.99 -2.39 -0.01 2.97 16 36 H 0.07 1.68 8.07 -2.38 -0.02 1.66 16 37 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.95 6.90 -2.39 -0.02 0.93 16 39 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 1.13 6.70 -2.39 -0.02 1.12 16 43 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.04 1.33 6.96 -2.39 -0.02 1.32 16 46 H 0.05 1.99 4.52 -2.39 -0.01 1.98 16 47 H 0.08 3.82 5.88 -2.38 -0.01 3.81 16 48 H 0.01 0.67 7.73 -2.39 -0.02 0.65 16 49 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.08 3.99 6.25 -2.39 -0.01 3.97 16 51 H 0.04 1.42 5.84 -2.39 -0.01 1.41 16 52 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -69.12 388.17 3.64 -65.48 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.92 Total: 17.84 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 7.57 Total: -2.06 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -5.19 Total: -116.03 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -1.69 Total: -11.96 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -69.12 3.64 -65.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339709658.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.672 kcal (2) G-P(sol) polarization free energy of solvation -69.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds