Wall clock time and date at job start Sat Apr 11 2020 08:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53116 * 109.52273 * 7.00371 * 3 2 1 5 5 C 1.53042 * 109.27798 * 177.56101 * 4 3 2 6 6 N 1.46848 * 109.52166 * 300.81830 * 5 4 3 7 7 C 1.38580 * 111.00041 * 185.83913 * 6 5 4 8 8 N 1.31218 * 126.47493 * 358.14376 * 7 6 5 9 9 N 1.28529 * 109.86157 * 179.69351 * 8 7 6 10 10 C 1.30298 * 110.05025 * 0.44852 * 9 8 7 11 11 C 1.50702 * 126.34190 * 179.82439 * 10 9 8 12 12 C 1.52995 * 109.47325 * 8.64859 * 11 10 9 13 13 C 1.53000 * 109.46645 * 248.64629 * 11 10 9 14 14 C 1.50704 * 109.46979 * 128.64936 * 11 10 9 15 15 H 1.07994 * 119.99625 * 359.97438 * 14 11 10 16 16 C 1.37870 * 119.99825 * 180.27653 * 14 11 10 17 17 N 1.31517 * 120.00293 * 359.71709 * 16 14 11 18 18 Si 1.86801 * 119.99952 * 179.72494 * 16 14 11 19 19 H 1.48498 * 109.47314 * 59.99807 * 18 16 14 20 20 H 1.48498 * 109.47128 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46848 * 299.99441 * 18 16 14 22 22 N 1.36452 * 126.47034 * 178.09319 * 7 6 5 23 23 C 1.46498 * 127.13901 * 0.02562 * 22 7 6 24 24 C 1.53003 * 109.47498 * 95.26839 * 23 22 7 25 25 O 1.42896 * 109.46943 * 174.39333 * 24 23 22 26 26 C 1.42903 * 113.99582 * 179.97438 * 25 24 23 27 27 C 1.46852 * 111.19630 * 61.74312 * 6 5 4 28 28 C 1.53036 * 109.52083 * 298.25642 * 27 6 5 29 29 H 4.44829 * 5.62900 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.57635 * 246.84382 * 3 2 1 31 31 H 1.08998 * 109.50656 * 57.62130 * 4 3 2 32 32 H 1.08998 * 109.50909 * 297.49829 * 4 3 2 33 33 H 1.09001 * 109.46225 * 180.80848 * 5 4 3 34 34 H 1.08993 * 109.46287 * 60.83457 * 5 4 3 35 35 H 1.08998 * 109.47328 * 180.63700 * 12 11 10 36 36 H 1.09010 * 109.47224 * 300.63492 * 12 11 10 37 37 H 1.08998 * 109.47675 * 60.63084 * 12 11 10 38 38 H 1.09002 * 109.47491 * 280.95022 * 13 11 10 39 39 H 1.09003 * 109.47264 * 40.95623 * 13 11 10 40 40 H 1.09004 * 109.46520 * 160.95259 * 13 11 10 41 41 H 0.96995 * 120.00455 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.46698 * 215.26909 * 23 22 7 43 43 H 1.09000 * 109.47033 * 335.26636 * 23 22 7 44 44 H 1.08999 * 109.46539 * 294.39488 * 24 23 22 45 45 H 1.09004 * 109.46713 * 54.39116 * 24 23 22 46 46 H 1.09001 * 109.47191 * 179.97438 * 26 25 24 47 47 H 1.08993 * 109.47473 * 299.99715 * 26 25 24 48 48 H 1.09000 * 109.47088 * 60.00223 * 26 25 24 49 49 H 1.09000 * 109.46067 * 58.27495 * 27 6 5 50 50 H 1.09000 * 109.46143 * 178.24143 * 27 6 5 51 51 H 1.08997 * 109.50617 * 299.23467 * 28 27 6 52 52 H 1.09003 * 109.50200 * 179.12204 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1583 -1.4315 -0.1760 5 6 4.6875 -1.4172 -0.2362 6 7 5.1265 -0.5798 -1.3598 7 6 6.5009 -0.6492 -1.5236 8 7 7.3421 -1.3263 -0.7781 9 7 8.5393 -1.1709 -1.2193 10 6 8.5340 -0.3843 -2.2580 11 6 9.7362 0.0466 -3.0581 12 6 10.9622 -0.7483 -2.6046 13 6 9.9865 1.5399 -2.8383 14 6 9.4841 -0.2105 -4.5215 15 1 8.5472 -0.6429 -4.8402 16 6 10.4519 0.1008 -5.4528 17 7 11.5929 0.6271 -5.0647 18 14 10.1424 -0.2249 -7.2660 19 1 8.9543 0.5464 -7.7118 20 1 11.3289 0.1952 -8.0539 21 1 9.8978 -1.6748 -7.4737 22 7 7.2348 -0.0270 -2.4912 23 6 6.7347 0.8429 -3.5585 24 6 6.8444 2.3043 -3.1188 25 8 6.4800 3.1574 -4.2058 26 6 6.5483 4.5513 -3.8987 27 6 4.6865 0.8108 -1.1891 28 6 3.1573 0.8630 -1.1573 29 1 -1.0497 -0.0003 -0.0002 30 1 3.0111 0.4047 0.9443 31 1 2.7616 -1.8488 -1.1014 32 1 2.8332 -2.0406 0.6674 33 1 5.0549 -2.4339 -0.3759 34 1 5.0839 -1.0126 0.6949 35 1 11.8341 -0.4287 -3.1754 36 1 11.1379 -0.5712 -1.5434 37 1 10.7884 -1.8113 -2.7715 38 1 9.2936 2.1183 -3.4494 39 1 9.8337 1.7830 -1.7868 40 1 11.0106 1.7822 -3.1221 41 1 12.2737 0.8464 -5.7199 42 1 7.3276 0.6893 -4.4602 43 1 5.6916 0.6027 -3.7642 44 1 6.1747 2.4818 -2.2773 45 1 7.8703 2.5171 -2.8180 46 1 6.2574 5.1310 -4.7748 47 1 5.8722 4.7752 -3.0737 48 1 7.5678 4.8111 -3.6138 49 1 5.0829 1.2050 -0.2534 50 1 5.0532 1.4124 -2.0208 51 1 2.7605 0.4819 -2.0982 52 1 2.8313 1.8934 -1.0150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342785432.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:12:46 Heat of formation + Delta-G solvation = 99.887050 kcal Electronic energy + Delta-G solvation = -32583.962511 eV Core-core repulsion = 28587.165820 eV Total energy + Delta-G solvation = -3996.796690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38430 -39.31382 -37.95790 -35.86227 -35.22573 -34.23042 -31.88882 -31.26994 -31.09062 -29.56909 -28.09036 -26.33304 -25.84006 -25.42448 -24.90249 -23.62158 -23.23341 -21.69406 -20.95627 -19.93745 -18.86037 -18.36973 -17.34722 -16.64075 -16.23276 -16.06314 -15.73016 -15.20520 -15.15296 -14.95638 -14.82572 -14.43089 -14.21821 -13.88845 -13.78685 -13.39240 -13.33926 -12.72419 -12.37880 -12.16419 -11.78759 -11.66920 -11.60363 -11.49393 -11.39751 -11.37344 -11.33120 -11.18733 -11.03355 -10.87659 -10.75502 -10.59125 -10.33725 -10.26370 -10.22435 -10.10777 -9.89765 -9.79433 -9.56169 -9.36822 -9.17050 -8.89531 -8.50241 -7.63590 -6.15079 -4.26142 2.42001 2.59269 2.62716 2.74066 3.24546 3.29215 3.32525 3.50214 3.74441 4.02887 4.23025 4.30546 4.53395 4.64592 4.83181 4.89612 4.98614 5.08412 5.13015 5.13132 5.23523 5.25658 5.31516 5.37621 5.41756 5.46314 5.50750 5.59595 5.65571 5.66757 5.75654 5.77515 5.87709 5.88280 5.93973 6.07629 6.14737 6.22708 6.55862 6.64227 6.66852 6.78454 6.91756 7.03581 7.14239 7.20461 7.29202 7.39958 7.46473 7.57361 7.75100 7.84182 8.01936 8.18207 8.69281 9.39675 9.55716 10.87336 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.003544 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.967868 B = 7898.475998 C = 8816.474513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.174 4.174 3 C 0.016 3.984 4 C -0.108 4.108 5 C 0.075 3.925 6 N -0.447 5.447 7 C 0.320 3.680 8 N -0.328 5.328 9 N -0.311 5.311 10 C 0.248 3.752 11 C 0.146 3.854 12 C -0.117 4.117 13 C -0.126 4.126 14 C -0.521 4.521 15 H 0.057 0.943 16 C 0.077 3.923 17 N -0.877 5.877 18 Si 0.892 3.108 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.276 1.276 22 N -0.468 5.468 23 C 0.104 3.896 24 C 0.034 3.966 25 O -0.381 6.381 26 C 0.034 3.966 27 C 0.040 3.960 28 C -0.104 4.104 29 H 0.216 0.784 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.020 0.980 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.009 0.991 40 H 0.083 0.917 41 H 0.264 0.736 42 H 0.135 0.865 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.037 0.963 48 H 0.044 0.956 49 H 0.046 0.954 50 H 0.093 0.907 51 H 0.080 0.920 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.024 5.555 6.506 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C -0.002 4.002 4 C -0.146 4.146 5 C -0.052 4.052 6 N -0.171 5.171 7 C -0.036 4.036 8 N -0.172 5.172 9 N -0.148 5.148 10 C -0.020 4.020 11 C 0.143 3.857 12 C -0.175 4.175 13 C -0.184 4.184 14 C -0.559 4.559 15 H 0.075 0.925 16 C -0.126 4.126 17 N -0.514 5.514 18 Si 0.720 3.280 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.202 1.202 22 N -0.163 5.163 23 C -0.020 4.020 24 C -0.043 4.043 25 O -0.299 6.299 26 C -0.063 4.063 27 C -0.087 4.087 28 C -0.142 4.142 29 H 0.233 0.767 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.039 0.961 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.152 0.848 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.111 0.889 51 H 0.098 0.902 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.618 4.467 6.939 17.664 hybrid contribution -0.643 1.065 -1.151 1.695 sum -16.260 5.532 5.788 18.125 Atomic orbital electron populations 1.24865 0.95865 1.00963 1.01269 1.22987 0.94113 1.00215 1.00085 1.18432 0.84535 0.97354 0.99917 1.21683 0.94495 0.94980 1.03402 1.21982 0.94068 0.98551 0.90604 1.58584 1.04483 1.10488 1.43520 1.22390 0.89957 1.00061 0.91201 1.74445 0.96312 1.23464 1.22976 1.73990 1.12276 1.17474 1.11062 1.26084 0.85443 0.95004 0.95433 1.16894 0.84326 0.92701 0.91733 1.21641 0.99762 0.98489 0.97640 1.21999 1.03930 0.96548 0.95935 1.20838 1.02145 1.43474 0.89457 0.92466 1.24807 0.94739 0.94230 0.98846 1.69841 1.05797 1.41611 1.34131 0.86637 0.77900 0.78933 0.84578 1.19943 1.21078 1.20151 1.45905 1.07693 1.38546 1.24180 1.21765 1.01905 0.86908 0.91380 1.23282 1.01415 0.90452 0.89196 1.87827 1.89242 1.16119 1.36734 1.22739 1.00483 0.81820 1.01261 1.22646 0.95913 0.87993 1.02182 1.21602 0.93733 0.99968 0.98878 0.76729 0.89066 0.90359 0.90336 0.88781 0.92928 0.89308 0.96065 0.94800 0.93683 0.97199 0.89785 0.92557 0.84776 0.89018 0.93578 0.90333 0.89491 0.94420 0.93697 0.93545 0.88868 0.90151 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.17 -1.73 12.57 -37.12 -0.47 -2.20 16 3 C 0.02 0.15 2.63 -93.29 -0.25 -0.10 16 4 C -0.11 -1.07 5.33 -26.65 -0.14 -1.22 16 5 C 0.08 0.96 4.87 -3.83 -0.02 0.94 16 6 N -0.45 -6.57 4.66 -174.55 -0.81 -7.38 16 7 C 0.32 6.02 7.18 -318.88 -2.29 3.73 16 8 N -0.33 -7.05 11.26 30.31 0.34 -6.71 16 9 N -0.31 -7.35 11.50 32.99 0.38 -6.97 16 10 C 0.25 5.61 6.22 -154.01 -0.96 4.65 16 11 C 0.15 3.44 0.56 -156.81 -0.09 3.35 16 12 C -0.12 -2.82 7.69 37.15 0.29 -2.54 16 13 C -0.13 -2.77 7.21 37.16 0.27 -2.50 16 14 C -0.52 -12.95 6.34 -34.44 -0.22 -13.17 16 15 H 0.06 1.44 6.44 -52.49 -0.34 1.11 16 16 C 0.08 1.94 5.15 -17.82 -0.09 1.84 16 17 N -0.88 -22.33 9.67 55.43 0.54 -21.80 16 18 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 20 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 N -0.47 -9.19 2.81 -114.08 -0.32 -9.51 16 23 C 0.10 1.80 5.20 -4.04 -0.02 1.78 16 24 C 0.03 0.52 5.61 37.16 0.21 0.73 16 25 O -0.38 -5.77 10.70 -35.23 -0.38 -6.15 16 26 C 0.03 0.38 11.01 101.05 1.11 1.49 16 27 C 0.04 0.48 5.08 -3.83 -0.02 0.46 16 28 C -0.10 -1.02 5.33 -26.65 -0.14 -1.16 16 29 H 0.22 1.15 7.80 -54.10 -0.42 0.73 16 30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.31 7.94 -51.93 -0.41 0.90 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 36 H 0.02 0.48 8.12 -51.92 -0.42 0.05 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.04 0.96 5.46 -51.93 -0.28 0.68 16 39 H 0.01 0.19 7.99 -51.93 -0.41 -0.22 16 40 H 0.08 1.97 6.67 -51.93 -0.35 1.63 16 41 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 42 H 0.13 2.66 5.27 -51.93 -0.27 2.38 16 43 H 0.09 1.42 7.42 -51.93 -0.39 1.04 16 44 H 0.05 0.63 5.71 -51.93 -0.30 0.33 16 45 H 0.08 1.35 4.69 -51.93 -0.24 1.10 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.09 1.17 3.07 -51.93 -0.16 1.01 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -28.91 399.20 -9.61 -38.52 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.10 Total: 4.27 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -2.26 Total: -5.19 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.12 Total: -52.36 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.38 Total: -6.15 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.91 -9.61 -38.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342785432.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.412 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds