Wall clock time and date at job start Sat Apr 11 2020 08:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.49403 * 2 1 4 4 C 1.53629 * 109.45597 * 120.20714 * 2 1 3 5 5 N 1.46923 * 108.54095 * 174.73778 * 4 2 1 6 6 C 1.34775 * 120.62835 * 126.36980 * 5 4 2 7 7 O 1.21627 * 119.99948 * 351.27698 * 6 5 4 8 8 C 1.47166 * 119.99995 * 171.28395 * 6 5 4 9 9 C 1.38405 * 126.88636 * 332.45338 * 8 6 5 10 10 C 1.39661 * 105.36051 * 180.22910 * 9 8 6 11 11 N 1.30867 * 107.86780 * 359.76349 * 10 9 8 12 12 N 1.28449 * 110.92151 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.18974 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47130 * 95.21612 * 13 12 11 15 15 C 1.53782 * 113.61746 * 273.39164 * 14 13 12 16 16 C 1.53957 * 87.02168 * 220.04726 * 15 14 13 17 17 C 1.53777 * 113.61469 * 175.77992 * 14 13 12 18 18 C 1.46928 * 118.74159 * 306.09712 * 5 4 2 19 19 C 1.53189 * 108.77551 * 53.85674 * 18 5 4 20 20 C 1.53037 * 109.49636 * 239.93372 * 2 1 3 21 21 H 1.08997 * 109.46251 * 58.62809 * 20 2 1 22 22 N 1.46506 * 109.45223 * 298.66598 * 20 2 1 23 23 C 1.36932 * 120.00261 * 154.93737 * 22 20 2 24 24 H 1.08002 * 119.99928 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00336 * 180.02562 * 23 22 20 26 26 N 1.31628 * 119.99667 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00353 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47238 * 60.00113 * 27 25 23 29 29 H 1.48504 * 109.47252 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47050 * 299.99671 * 27 25 23 31 31 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.06447 * 1 2 3 33 33 H 1.09004 * 109.46960 * 60.06588 * 1 2 3 34 34 H 1.09003 * 109.73619 * 55.00658 * 4 2 1 35 35 H 1.08995 * 109.66517 * 294.43631 * 4 2 1 36 36 H 1.08005 * 127.31911 * 359.97178 * 9 8 6 37 37 H 1.08004 * 126.07121 * 179.78261 * 10 9 8 38 38 H 1.08999 * 109.47088 * 335.21606 * 13 12 11 39 39 H 1.08997 * 109.47176 * 215.21420 * 13 12 11 40 40 H 1.09008 * 112.84982 * 44.58208 * 14 13 12 41 41 H 1.09003 * 113.61223 * 334.56322 * 15 14 13 42 42 H 1.08996 * 113.61907 * 105.46664 * 15 14 13 43 43 H 1.08996 * 113.53487 * 270.81504 * 16 15 14 44 44 H 1.08994 * 113.74406 * 139.93871 * 16 15 14 45 45 H 1.09002 * 113.61557 * 254.52878 * 17 14 13 46 46 H 1.08996 * 113.61397 * 25.35404 * 17 14 13 47 47 H 1.09004 * 109.58679 * 173.64560 * 18 5 4 48 48 H 1.08998 * 109.58128 * 294.06971 * 18 5 4 49 49 H 1.09004 * 109.49780 * 65.32285 * 19 18 5 50 50 H 1.09002 * 109.49961 * 185.41330 * 19 18 5 51 51 H 0.97000 * 119.99626 * 334.94262 * 22 20 2 52 52 H 0.96998 * 119.99688 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7288 1.2519 5 7 3.5053 -0.8284 1.1690 6 6 4.2818 -0.3854 2.1776 7 8 3.7881 0.2434 3.0941 8 6 5.7271 -0.6626 2.1697 9 6 6.3642 -1.7345 1.5691 10 6 7.7224 -1.5582 1.8427 11 7 7.8515 -0.4613 2.5446 12 7 6.7090 0.0880 2.7515 13 6 6.4916 1.3275 3.5017 14 6 6.4323 2.5079 2.5302 15 6 7.8112 3.1014 2.1968 16 6 7.1442 4.4868 2.2731 17 6 6.1039 3.8482 3.2087 18 6 4.1059 -1.4256 -0.0316 19 6 3.5708 -0.6941 -1.2666 20 6 2.0408 -0.7228 -1.2485 21 1 1.6577 -0.2243 -2.1389 22 7 1.5789 -2.1130 -1.2307 23 6 1.4474 -2.8059 -2.4044 24 1 1.6845 -2.3277 -3.3433 25 6 1.0093 -4.1230 -2.3876 26 7 0.7208 -4.7060 -1.2432 27 14 0.8306 -5.0685 -3.9886 28 1 2.1469 -5.1370 -4.6727 29 1 0.3509 -6.4440 -3.7003 30 1 -0.1476 -4.3763 -4.8657 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6096 -1.7284 1.2983 35 1 1.7636 -0.1664 2.1431 36 1 5.9077 -2.5388 1.0114 37 1 8.5240 -2.2111 1.5302 38 1 7.3120 1.4758 4.2039 39 1 5.5518 1.2604 4.0497 40 1 5.8214 2.3023 1.6511 41 1 8.5581 2.9331 2.9727 42 1 8.1688 2.8422 1.2003 43 1 6.7288 4.8228 1.3231 44 1 7.7602 5.2444 2.7574 45 1 5.0852 4.1912 3.0278 46 1 6.3819 3.8840 4.2620 47 1 5.1902 -1.3230 0.0127 48 1 3.8386 -2.4808 -0.0875 49 1 3.9155 0.3400 -1.2547 50 1 3.9334 -1.1884 -2.1678 51 1 1.3663 -2.5426 -0.3874 52 1 0.4150 -5.6264 -1.2315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036033402.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:17 Heat of formation + Delta-G solvation = 80.414377 kcal Electronic energy + Delta-G solvation = -32100.306959 eV Core-core repulsion = 28102.665870 eV Total energy + Delta-G solvation = -3997.641089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.58444 -39.82319 -39.07546 -37.64932 -34.52910 -33.29416 -32.90148 -31.47546 -30.74198 -29.21910 -28.33840 -26.37285 -25.89462 -25.28908 -23.75966 -23.52321 -22.29236 -21.79446 -21.35186 -19.74057 -19.50587 -18.49288 -17.37734 -17.03870 -16.52219 -16.16370 -15.78946 -15.42555 -15.01600 -14.66036 -14.50411 -14.41795 -14.10747 -13.93153 -13.84129 -13.37481 -13.31232 -13.04587 -12.79956 -12.74909 -12.52749 -12.34308 -12.10400 -11.81356 -11.63288 -11.41791 -11.21886 -11.04903 -10.91273 -10.81058 -10.76077 -10.71875 -10.56462 -10.52625 -10.38361 -10.24078 -9.87105 -9.84651 -9.57788 -9.13646 -8.98844 -8.83287 -8.28827 -7.00120 -5.81156 -3.09691 1.36829 2.31640 2.64185 3.18468 3.26215 3.40617 3.46034 3.46672 4.20602 4.33656 4.37228 4.49884 4.52717 4.55617 4.67595 4.94902 5.06816 5.16626 5.19783 5.28459 5.34095 5.38729 5.42501 5.45359 5.51512 5.55063 5.58203 5.61499 5.63764 5.70499 5.74050 5.79168 5.81991 5.88982 5.91254 6.01516 6.06746 6.16086 6.20235 6.30324 6.37722 6.46407 6.48852 6.59264 6.66679 6.73467 6.74180 6.90156 6.96074 7.57394 7.66276 8.05320 8.22919 8.37373 9.48999 10.05157 10.40403 11.41132 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003008 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.628100 B = 9305.918221 C =10063.168446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.065 0.935 4 C 0.121 3.879 5 N -0.583 5.583 6 C 0.587 3.413 7 O -0.552 6.552 8 C -0.029 4.029 9 C -0.191 4.191 10 C -0.007 4.007 11 N -0.281 5.281 12 N -0.256 5.256 13 C 0.124 3.876 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.141 4.141 17 C -0.128 4.128 18 C 0.097 3.903 19 C -0.149 4.149 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.238 4.238 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.932 5.932 27 Si 0.904 3.096 28 H -0.287 1.287 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.167 0.833 37 H 0.185 0.815 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.046 0.954 50 H 0.075 0.925 51 H 0.384 0.616 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.128 14.223 7.886 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.313 5.313 6 C 0.374 3.626 7 O -0.432 6.432 8 C -0.158 4.158 9 C -0.219 4.219 10 C -0.183 4.183 11 N -0.113 5.113 12 N -0.043 5.043 13 C 0.004 3.996 14 C -0.143 4.143 15 C -0.170 4.170 16 C -0.179 4.179 17 C -0.166 4.166 18 C -0.025 4.025 19 C -0.190 4.190 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.581 5.581 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.214 1.214 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.106 0.894 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.219 0.781 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.596 15.275 8.793 21.663 hybrid contribution -0.700 -1.489 -1.214 2.045 sum 11.896 13.785 7.579 19.723 Atomic orbital electron populations 1.21670 0.94154 1.03239 1.00467 1.21775 0.96520 0.98790 0.95616 0.91618 1.21820 0.77617 1.01788 0.98879 1.47828 1.07054 1.59130 1.17319 1.16949 0.83898 0.79266 0.82510 1.90736 1.74839 1.41189 1.36413 1.21446 0.91547 0.97222 1.05546 1.22508 0.93977 1.00529 1.04924 1.23562 0.96936 0.96268 1.01507 1.73165 1.08166 1.11050 1.18905 1.45704 1.02224 1.18825 1.37542 1.22253 1.04983 0.78811 0.93533 1.22922 0.98905 0.93269 0.99232 1.23000 0.95852 0.95790 1.02311 1.22832 0.98263 0.96697 1.00097 1.22855 1.00022 0.94426 0.99262 1.22281 0.97995 0.98968 0.83249 1.22521 1.00374 0.98577 0.97499 1.20223 0.90833 0.87383 0.94803 0.93132 1.42462 1.79032 1.07650 1.06917 1.19164 1.37343 0.93878 0.86542 0.91324 1.24698 1.02234 0.97177 0.96582 1.69637 1.51639 1.13115 1.23678 0.86318 0.77767 0.79218 0.83143 1.21337 1.21812 1.21396 0.90981 0.93750 0.92777 0.90241 0.89616 0.81535 0.79834 0.88287 0.86647 0.88801 0.89776 0.91488 0.90136 0.91217 0.90838 0.89702 0.89390 0.89447 0.93505 0.90610 0.78110 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.05 37.16 0.34 -1.81 16 2 C -0.11 -1.70 2.68 -90.27 -0.24 -1.94 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.98 5.46 -3.48 -0.02 1.96 16 5 N -0.58 -9.29 2.97 -173.87 -0.52 -9.80 16 6 C 0.59 9.53 7.52 -12.64 -0.09 9.43 16 7 O -0.55 -9.85 14.57 5.25 0.08 -9.77 16 8 C -0.03 -0.43 6.39 -82.06 -0.52 -0.95 16 9 C -0.19 -2.53 8.59 -38.99 -0.34 -2.87 16 10 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 11 N -0.28 -3.78 11.90 30.59 0.36 -3.41 16 12 N -0.26 -3.46 3.35 -57.14 -0.19 -3.65 16 13 C 0.12 1.40 5.80 -4.04 -0.02 1.37 16 14 C -0.12 -1.26 3.96 -89.81 -0.36 -1.61 16 15 C -0.13 -1.18 7.65 -25.83 -0.20 -1.37 16 16 C -0.14 -1.09 8.09 -25.82 -0.21 -1.30 16 17 C -0.13 -1.05 7.65 -25.92 -0.20 -1.25 16 18 C 0.10 1.52 4.92 -3.71 -0.02 1.50 16 19 C -0.15 -2.42 5.78 -26.61 -0.15 -2.57 16 20 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.02 3.64 -53.38 -0.19 -16.22 16 23 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 24 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 25 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -26.57 13.06 55.49 0.72 -25.85 16 27 Si 0.90 21.46 29.55 -169.99 -5.02 16.44 16 28 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 31 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.43 6.63 -51.93 -0.34 1.09 16 35 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 36 H 0.17 2.07 6.50 -52.48 -0.34 1.72 16 37 H 0.18 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.10 0.94 7.86 -51.93 -0.41 0.53 16 39 H 0.12 1.42 6.42 -51.93 -0.33 1.09 16 40 H 0.09 1.15 8.14 -51.92 -0.42 0.72 16 41 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.09 1.23 4.32 -51.93 -0.22 1.01 16 48 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.38 9.17 5.92 -40.82 -0.24 8.93 16 52 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -29.45 403.51 -9.84 -39.28 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -8.50 Total: 12.16 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.66 Total: -5.25 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.19 Total: -58.93 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.45 -9.84 -39.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036033402.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.698 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds