Wall clock time and date at job start Sat Apr 11 2020 08:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.49403 * 2 1 4 4 C 1.53629 * 109.45597 * 120.20714 * 2 1 3 5 5 N 1.46923 * 108.54095 * 174.73778 * 4 2 1 6 6 C 1.34775 * 120.62835 * 126.36980 * 5 4 2 7 7 O 1.21627 * 119.99948 * 351.27698 * 6 5 4 8 8 C 1.47166 * 119.99995 * 171.28395 * 6 5 4 9 9 C 1.38405 * 126.88636 * 332.45338 * 8 6 5 10 10 C 1.39661 * 105.36051 * 180.22910 * 9 8 6 11 11 N 1.30867 * 107.86780 * 359.76349 * 10 9 8 12 12 N 1.28449 * 110.92151 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.18974 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.47130 * 95.21612 * 13 12 11 15 15 C 1.53782 * 113.61746 * 273.39164 * 14 13 12 16 16 C 1.53957 * 87.02168 * 220.04726 * 15 14 13 17 17 C 1.53777 * 113.61469 * 175.77992 * 14 13 12 18 18 C 1.46928 * 118.74159 * 306.09712 * 5 4 2 19 19 C 1.53189 * 108.77551 * 53.85674 * 18 5 4 20 20 C 1.53037 * 109.49636 * 239.93372 * 2 1 3 21 21 H 1.08997 * 109.46251 * 58.62809 * 20 2 1 22 22 N 1.46506 * 109.45223 * 298.66598 * 20 2 1 23 23 C 1.36932 * 120.00261 * 154.93737 * 22 20 2 24 24 H 1.08002 * 119.99928 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00336 * 180.02562 * 23 22 20 26 26 N 1.31628 * 119.99667 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00353 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47238 * 60.00113 * 27 25 23 29 29 H 1.48504 * 109.47252 * 179.97438 * 27 25 23 30 30 H 1.48498 * 109.47050 * 299.99671 * 27 25 23 31 31 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47281 * 300.06447 * 1 2 3 33 33 H 1.09004 * 109.46960 * 60.06588 * 1 2 3 34 34 H 1.09003 * 109.73619 * 55.00658 * 4 2 1 35 35 H 1.08995 * 109.66517 * 294.43631 * 4 2 1 36 36 H 1.08005 * 127.31911 * 359.97178 * 9 8 6 37 37 H 1.08004 * 126.07121 * 179.78261 * 10 9 8 38 38 H 1.08999 * 109.47088 * 335.21606 * 13 12 11 39 39 H 1.08997 * 109.47176 * 215.21420 * 13 12 11 40 40 H 1.09008 * 112.84982 * 44.58208 * 14 13 12 41 41 H 1.09003 * 113.61223 * 334.56322 * 15 14 13 42 42 H 1.08996 * 113.61907 * 105.46664 * 15 14 13 43 43 H 1.08996 * 113.53487 * 270.81504 * 16 15 14 44 44 H 1.08994 * 113.74406 * 139.93871 * 16 15 14 45 45 H 1.09002 * 113.61557 * 254.52878 * 17 14 13 46 46 H 1.08996 * 113.61397 * 25.35404 * 17 14 13 47 47 H 1.09004 * 109.58679 * 173.64560 * 18 5 4 48 48 H 1.08998 * 109.58128 * 294.06971 * 18 5 4 49 49 H 1.09004 * 109.49780 * 65.32285 * 19 18 5 50 50 H 1.09002 * 109.49961 * 185.41330 * 19 18 5 51 51 H 0.97000 * 119.99626 * 334.94262 * 22 20 2 52 52 H 0.96998 * 119.99688 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7288 1.2519 5 7 3.5053 -0.8284 1.1690 6 6 4.2818 -0.3854 2.1776 7 8 3.7881 0.2434 3.0941 8 6 5.7271 -0.6626 2.1697 9 6 6.3642 -1.7345 1.5691 10 6 7.7224 -1.5582 1.8427 11 7 7.8515 -0.4613 2.5446 12 7 6.7090 0.0880 2.7515 13 6 6.4916 1.3275 3.5017 14 6 6.4323 2.5079 2.5302 15 6 7.8112 3.1014 2.1968 16 6 7.1442 4.4868 2.2731 17 6 6.1039 3.8482 3.2087 18 6 4.1059 -1.4256 -0.0316 19 6 3.5708 -0.6941 -1.2666 20 6 2.0408 -0.7228 -1.2485 21 1 1.6577 -0.2243 -2.1389 22 7 1.5789 -2.1130 -1.2307 23 6 1.4474 -2.8059 -2.4044 24 1 1.6845 -2.3277 -3.3433 25 6 1.0093 -4.1230 -2.3876 26 7 0.7208 -4.7060 -1.2432 27 14 0.8306 -5.0685 -3.9886 28 1 2.1469 -5.1370 -4.6727 29 1 0.3509 -6.4440 -3.7003 30 1 -0.1476 -4.3763 -4.8657 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6096 -1.7284 1.2983 35 1 1.7636 -0.1664 2.1431 36 1 5.9077 -2.5388 1.0114 37 1 8.5240 -2.2111 1.5302 38 1 7.3120 1.4758 4.2039 39 1 5.5518 1.2604 4.0497 40 1 5.8214 2.3023 1.6511 41 1 8.5581 2.9331 2.9727 42 1 8.1688 2.8422 1.2003 43 1 6.7288 4.8228 1.3231 44 1 7.7602 5.2444 2.7574 45 1 5.0852 4.1912 3.0278 46 1 6.3819 3.8840 4.2620 47 1 5.1902 -1.3230 0.0127 48 1 3.8386 -2.4808 -0.0875 49 1 3.9155 0.3400 -1.2547 50 1 3.9334 -1.1884 -2.1678 51 1 1.3663 -2.5426 -0.3874 52 1 0.4150 -5.6264 -1.2315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036033402.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:16 Heat of formation + Delta-G solvation = 65.375846 kcal Electronic energy + Delta-G solvation = -32100.959078 eV Core-core repulsion = 28102.665870 eV Total energy + Delta-G solvation = -3998.293209 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.61848 -41.14811 -39.79869 -39.04913 -36.02090 -34.68103 -34.10535 -33.04421 -31.86908 -30.93852 -29.21757 -27.68004 -26.76236 -26.56084 -25.41114 -24.50468 -23.47514 -23.09961 -22.47237 -20.67438 -20.43280 -19.84800 -19.25522 -18.26786 -17.73319 -17.14068 -16.81010 -16.64915 -16.31523 -16.07536 -15.87596 -15.63992 -15.31501 -15.13860 -14.97973 -14.86036 -14.48234 -14.32026 -14.17615 -13.82822 -13.53106 -13.39162 -13.11755 -12.99600 -12.92867 -12.80951 -12.68170 -12.54178 -12.42395 -12.15046 -11.99601 -11.93770 -11.80210 -11.64223 -11.56951 -11.40817 -11.29096 -11.16654 -11.09582 -10.83183 -10.18940 -9.91030 -9.64317 -8.89998 -7.86214 -5.12236 0.23225 1.28128 1.52210 1.52710 1.58567 1.63606 1.99824 2.04221 2.61967 3.27892 3.41185 3.47588 3.61106 3.67483 3.75511 3.83479 3.87742 3.92036 4.04363 4.09350 4.11522 4.19560 4.31310 4.34798 4.38202 4.48069 4.49676 4.62893 4.64909 4.71087 4.76332 4.79597 4.81333 4.84014 4.84822 4.97129 5.02503 5.03688 5.05622 5.13781 5.19674 5.21553 5.27947 5.29192 5.47711 5.48845 5.51511 5.60263 5.63217 5.75901 6.27998 6.35479 6.89747 7.07938 7.43463 8.18906 8.43142 9.36682 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003008 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.628100 B = 9305.918221 C =10063.168446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 H 0.084 0.916 4 C 0.126 3.874 5 N -0.583 5.583 6 C 0.588 3.412 7 O -0.571 6.571 8 C -0.052 4.052 9 C -0.191 4.191 10 C -0.003 4.003 11 N -0.287 5.287 12 N -0.256 5.256 13 C 0.121 3.879 14 C -0.127 4.127 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.123 4.123 18 C 0.107 3.893 19 C -0.141 4.141 20 C 0.173 3.827 21 H 0.047 0.953 22 N -0.723 5.723 23 C -0.227 4.227 24 H 0.074 0.926 25 C -0.071 4.071 26 N -0.968 5.968 27 Si 0.962 3.038 28 H -0.279 1.279 29 H -0.303 1.303 30 H -0.284 1.284 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.173 0.827 37 H 0.217 0.783 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.374 0.626 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.901 15.913 7.706 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 H 0.102 0.898 4 C 0.004 3.996 5 N -0.313 5.313 6 C 0.376 3.624 7 O -0.452 6.452 8 C -0.180 4.180 9 C -0.220 4.220 10 C -0.178 4.178 11 N -0.120 5.120 12 N -0.044 5.044 13 C 0.002 3.998 14 C -0.146 4.146 15 C -0.165 4.165 16 C -0.171 4.171 17 C -0.161 4.161 18 C -0.015 4.015 19 C -0.182 4.182 20 C 0.064 3.936 21 H 0.065 0.935 22 N -0.364 5.364 23 C -0.359 4.359 24 H 0.092 0.908 25 C -0.263 4.263 26 N -0.619 5.619 27 Si 0.792 3.208 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.210 1.210 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.190 0.810 37 H 0.233 0.767 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.126 0.874 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.208 0.792 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.392 17.017 8.591 23.885 hybrid contribution -1.213 -1.942 -1.122 2.550 sum 13.179 15.075 7.468 21.371 Atomic orbital electron populations 1.21601 0.93842 1.01634 1.01844 1.21692 0.96704 0.99154 0.94109 0.89793 1.21692 0.78020 1.00645 0.99268 1.47809 1.06836 1.59167 1.17480 1.17148 0.84604 0.78691 0.81978 1.90718 1.75427 1.42093 1.36986 1.21365 0.90995 0.98475 1.07193 1.22668 0.94596 1.00154 1.04611 1.24105 0.97249 0.96022 1.00470 1.73175 1.08074 1.11533 1.19191 1.45921 1.01917 1.19189 1.37356 1.22401 1.04990 0.78472 0.93932 1.22884 0.99655 0.93691 0.98410 1.22990 0.95247 0.96355 1.01957 1.22804 0.97906 0.96425 1.00007 1.22887 1.00056 0.92962 1.00191 1.22163 0.99063 0.97296 0.82960 1.22397 0.98569 0.99807 0.97398 1.20423 0.92066 0.85301 0.95784 0.93478 1.42556 1.79107 1.09133 1.05615 1.19506 1.34845 0.93852 0.87664 0.90801 1.25350 1.03577 0.98397 0.98982 1.69789 1.53809 1.12863 1.25414 0.85385 0.77818 0.77398 0.80168 1.20559 1.22945 1.21009 0.93977 0.91565 0.92225 0.92410 0.89315 0.81021 0.76652 0.86434 0.88049 0.91197 0.88864 0.92542 0.90330 0.89560 0.91322 0.88153 0.87422 0.92019 0.91420 0.91276 0.79200 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.05 71.98 0.65 -3.36 16 2 C -0.10 -2.99 2.68 -10.57 -0.03 -3.02 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.13 4.13 5.46 86.51 0.47 4.60 16 5 N -0.58 -18.44 2.97 -822.24 -2.44 -20.88 16 6 C 0.59 18.92 7.52 86.59 0.65 19.57 16 7 O -0.57 -20.34 14.57 -4.12 -0.06 -20.40 16 8 C -0.05 -1.48 6.39 40.79 0.26 -1.22 16 9 C -0.19 -4.83 8.59 22.65 0.19 -4.63 16 10 C 0.00 -0.07 12.03 85.18 1.02 0.95 16 11 N -0.29 -7.20 11.90 -57.14 -0.68 -7.88 16 12 N -0.26 -6.65 3.35 -334.70 -1.12 -7.77 16 13 C 0.12 2.61 5.80 86.38 0.50 3.11 16 14 C -0.13 -2.44 3.96 -10.27 -0.04 -2.48 16 15 C -0.13 -2.05 7.65 31.18 0.24 -1.82 16 16 C -0.13 -1.78 8.09 31.18 0.25 -1.53 16 17 C -0.12 -1.81 7.65 31.12 0.24 -1.58 16 18 C 0.11 3.30 4.92 86.36 0.42 3.72 16 19 C -0.14 -4.42 5.78 30.67 0.18 -4.24 16 20 C 0.17 6.16 2.53 45.02 0.11 6.27 16 21 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 22 N -0.72 -32.59 3.64 -322.81 -1.17 -33.77 16 23 C -0.23 -11.57 9.93 84.03 0.83 -10.74 16 24 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 25 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 26 N -0.97 -56.56 13.06 21.65 0.28 -56.28 16 27 Si 0.96 44.52 29.55 68.60 2.03 46.55 16 28 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 29 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 30 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 31 H 0.04 1.54 7.54 -2.39 -0.02 1.52 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 2.16 6.63 -2.39 -0.02 2.14 16 35 H 0.09 2.86 7.00 -2.39 -0.02 2.84 16 36 H 0.17 4.08 6.50 -2.91 -0.02 4.06 16 37 H 0.22 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.12 2.03 7.86 -2.39 -0.02 2.01 16 39 H 0.10 2.47 6.42 -2.39 -0.02 2.46 16 40 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.09 1.33 7.91 -2.39 -0.02 1.31 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 47 H 0.11 2.90 4.32 -2.39 -0.01 2.89 16 48 H 0.06 2.25 7.74 -2.39 -0.02 2.23 16 49 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.37 18.43 5.92 -92.71 -0.55 17.88 16 52 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -63.39 403.51 3.64 -59.75 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: 0.37 Total: 40.44 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 6.43 Total: 0.23 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -5.13 Total: -126.57 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.39 3.64 -59.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036033402.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.125 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds