Wall clock time and date at job start Sat Apr 11 2020 08:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.52257 * 2 1 4 4 C 1.52755 * 109.56505 * 240.04123 * 2 1 3 5 5 N 1.46925 * 109.00592 * 185.55210 * 4 2 1 6 6 C 1.34778 * 120.63070 * 233.58687 * 5 4 2 7 7 O 1.21631 * 120.00139 * 8.25920 * 6 5 4 8 8 C 1.47166 * 120.00029 * 188.26211 * 6 5 4 9 9 C 1.38404 * 126.88168 * 27.96450 * 8 6 5 10 10 C 1.39677 * 105.35749 * 180.02562 * 9 8 6 11 11 N 1.30875 * 107.85997 * 359.97438 * 10 9 8 12 12 N 1.28437 * 110.92487 * 359.97438 * 11 10 9 13 13 C 1.46499 * 125.18876 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47239 * 94.79665 * 13 12 11 15 15 C 1.53779 * 113.61540 * 273.73343 * 14 13 12 16 16 C 1.53779 * 87.07996 * 220.01868 * 15 14 13 17 17 C 1.53781 * 87.08290 * 25.43508 * 16 15 14 18 18 C 1.46920 * 118.74038 * 53.31351 * 5 4 2 19 19 C 1.53197 * 108.77449 * 306.64300 * 18 5 4 20 20 C 1.53035 * 109.31118 * 54.63542 * 19 18 5 21 21 H 1.08993 * 109.46631 * 58.64181 * 20 19 18 22 22 N 1.46506 * 109.45933 * 178.61807 * 20 19 18 23 23 C 1.36935 * 119.99450 * 274.99904 * 22 20 19 24 24 H 1.07998 * 120.00584 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99905 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00430 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99802 * 359.97438 * 25 23 22 28 28 H 1.48509 * 109.47200 * 90.00185 * 27 25 23 29 29 H 1.48499 * 109.47517 * 210.00031 * 27 25 23 30 30 H 1.48500 * 109.47415 * 330.00348 * 27 25 23 31 31 H 1.09007 * 109.47231 * 299.92242 * 1 2 3 32 32 H 1.09000 * 109.47302 * 59.92216 * 1 2 3 33 33 H 1.08997 * 109.47085 * 179.91867 * 1 2 3 34 34 H 1.09004 * 109.50738 * 65.67558 * 4 2 1 35 35 H 1.08993 * 109.43487 * 305.38884 * 4 2 1 36 36 H 1.07993 * 127.32593 * 359.97438 * 9 8 6 37 37 H 1.07996 * 126.07363 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.47582 * 214.80539 * 13 12 11 39 39 H 1.09006 * 109.47126 * 334.80325 * 13 12 11 40 40 H 1.09000 * 112.84568 * 45.04080 * 14 13 12 41 41 H 1.09000 * 113.61967 * 334.56976 * 15 14 13 42 42 H 1.09003 * 113.61242 * 105.47250 * 15 14 13 43 43 H 1.09003 * 113.61144 * 270.88155 * 16 15 14 44 44 H 1.09006 * 113.61529 * 139.98636 * 16 15 14 45 45 H 1.08997 * 113.61343 * 220.01929 * 17 16 15 46 46 H 1.08995 * 113.61182 * 89.11465 * 17 16 15 47 47 H 1.09006 * 109.58695 * 66.42415 * 18 5 4 48 48 H 1.08997 * 109.58972 * 186.71166 * 18 5 4 49 49 H 1.08997 * 109.49525 * 174.58640 * 19 18 5 50 50 H 1.08995 * 109.49509 * 294.64589 * 19 18 5 51 51 H 0.97003 * 120.00078 * 94.99380 * 22 20 19 52 52 H 0.97000 * 120.00221 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0416 -0.7188 -1.2470 5 7 3.5046 -0.8292 -1.1694 6 6 4.2812 -0.3856 -2.1777 7 8 3.7878 0.2450 -3.0933 8 6 5.7262 -0.6644 -2.1710 9 6 6.3615 -1.7422 -1.5790 10 6 7.7208 -1.5619 -1.8448 11 7 7.8514 -0.4603 -2.5393 12 7 6.7091 0.0882 -2.7484 13 6 6.4933 1.3324 -3.4911 14 6 6.1618 1.0056 -4.9486 15 6 7.4037 0.8298 -5.8383 16 6 6.6312 1.5876 -6.9309 17 6 5.8264 2.2438 -5.7966 18 6 4.1053 -1.4266 0.0309 19 6 3.5708 -0.6949 1.2662 20 6 2.0408 -0.7231 1.2484 21 1 1.6967 -1.7572 1.2352 22 7 1.5264 -0.0528 2.4453 23 6 1.3950 -0.7494 3.6169 24 1 1.6702 -1.7930 3.6586 25 6 0.9081 -0.1143 4.7512 26 7 0.7813 -0.7839 5.8772 27 14 0.4329 1.6908 4.6794 28 1 -0.9980 1.8113 4.3007 29 1 0.6464 2.3123 6.0111 30 1 1.2723 2.3840 3.6694 31 1 -0.3634 0.5127 0.8907 32 1 -0.3634 0.5150 -0.8893 33 1 -0.3633 -1.0276 -0.0015 34 1 1.7647 -0.1497 -2.1345 35 1 1.6021 -1.7149 -1.2974 36 1 5.9037 -2.5502 -1.0280 37 1 8.5219 -2.2155 -1.5327 38 1 5.6652 1.8831 -3.0448 39 1 7.3971 1.9405 -3.4517 40 1 5.4351 0.1991 -5.0467 41 1 8.2812 1.3639 -5.4737 42 1 7.6148 -0.2087 -6.0932 43 1 6.0336 0.9397 -7.5722 44 1 7.2463 2.2903 -7.4931 45 1 4.7641 2.3467 -6.0179 46 1 6.2727 3.1644 -5.4207 47 1 3.8375 -2.4818 0.0870 48 1 5.1897 -1.3268 -0.0147 49 1 3.9334 -1.1895 2.1672 50 1 3.9163 0.3387 1.2545 51 1 1.2790 0.8844 2.4079 52 1 0.4415 -0.3400 6.6698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036033405.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:23 Heat of formation + Delta-G solvation = 64.024321 kcal Electronic energy + Delta-G solvation = -31511.740567 eV Core-core repulsion = 27513.388752 eV Total energy + Delta-G solvation = -3998.351815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.60213 -41.11347 -39.80078 -39.02516 -36.39192 -34.73598 -34.11958 -33.29830 -31.91930 -31.47400 -29.21084 -27.73065 -26.90337 -26.55796 -24.85484 -24.34803 -23.14281 -23.08635 -22.46789 -21.28406 -20.44612 -20.25590 -19.48396 -18.35894 -17.74736 -17.17143 -16.89398 -16.71263 -16.28363 -16.13836 -16.01355 -15.38145 -15.34519 -15.12129 -14.94601 -14.87532 -14.61787 -14.34818 -14.18033 -13.84490 -13.64373 -13.41726 -13.39618 -13.04471 -12.97792 -12.95611 -12.81615 -12.54688 -12.45411 -12.14833 -12.03057 -11.87945 -11.78614 -11.74078 -11.69049 -11.40305 -11.22590 -11.18046 -11.16159 -10.91227 -10.19890 -9.89661 -9.71877 -9.25421 -7.99321 -5.30912 0.26402 1.28885 1.37734 1.39072 1.46197 1.65970 1.96563 2.07448 2.49315 3.26100 3.33133 3.40171 3.55219 3.63726 3.69629 3.76601 3.78567 3.92664 3.96998 4.04188 4.14172 4.20081 4.26127 4.33648 4.35181 4.43686 4.45495 4.60361 4.64342 4.73864 4.77031 4.79112 4.79927 4.81597 4.83821 4.87601 4.94315 5.00894 5.02150 5.05711 5.15020 5.22857 5.25513 5.38093 5.44849 5.50713 5.54856 5.59557 5.76806 5.81519 6.23149 6.25006 6.90746 7.10639 7.10912 7.87999 8.05834 9.22130 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016822 B = 0.002613 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.074338 B =10712.989157 C =11347.505576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.103 4.103 3 H 0.059 0.941 4 C 0.129 3.871 5 N -0.590 5.590 6 C 0.588 3.412 7 O -0.564 6.564 8 C -0.055 4.055 9 C -0.187 4.187 10 C -0.005 4.005 11 N -0.294 5.294 12 N -0.260 5.260 13 C 0.131 3.869 14 C -0.119 4.119 15 C -0.130 4.130 16 C -0.134 4.134 17 C -0.124 4.124 18 C 0.100 3.900 19 C -0.143 4.143 20 C 0.182 3.818 21 H 0.054 0.946 22 N -0.748 5.748 23 C -0.216 4.216 24 H 0.064 0.936 25 C -0.063 4.063 26 N -0.983 5.983 27 Si 0.946 3.054 28 H -0.280 1.280 29 H -0.301 1.301 30 H -0.258 1.258 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.186 0.814 37 H 0.216 0.784 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.066 0.934 50 H 0.046 0.954 51 H 0.361 0.639 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.159 1.647 -24.910 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.123 4.123 3 H 0.078 0.922 4 C 0.007 3.993 5 N -0.321 5.321 6 C 0.375 3.625 7 O -0.444 6.444 8 C -0.183 4.183 9 C -0.216 4.216 10 C -0.181 4.181 11 N -0.126 5.126 12 N -0.048 5.048 13 C 0.011 3.989 14 C -0.139 4.139 15 C -0.167 4.167 16 C -0.172 4.172 17 C -0.162 4.162 18 C -0.022 4.022 19 C -0.184 4.184 20 C 0.074 3.926 21 H 0.072 0.928 22 N -0.390 5.390 23 C -0.347 4.347 24 H 0.082 0.918 25 C -0.255 4.255 26 N -0.635 5.635 27 Si 0.774 3.226 28 H -0.206 1.206 29 H -0.228 1.228 30 H -0.183 1.183 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.203 0.797 37 H 0.233 0.767 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.129 0.871 49 H 0.085 0.915 50 H 0.064 0.936 51 H 0.194 0.806 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.656 2.623 -25.836 29.341 hybrid contribution -1.169 0.450 1.373 1.859 sum 12.487 3.073 -24.463 27.637 Atomic orbital electron populations 1.21638 0.93476 1.02531 1.01601 1.21583 0.97026 0.99405 0.94323 0.92247 1.21611 0.77744 1.01895 0.98089 1.47859 1.07036 1.59736 1.17452 1.17146 0.84528 0.78622 0.82185 1.90775 1.75327 1.41182 1.37095 1.21478 0.91090 0.98560 1.07190 1.22741 0.94178 1.00081 1.04568 1.24168 0.97643 0.95852 1.00418 1.73187 1.08228 1.11967 1.19193 1.45914 1.02143 1.19500 1.37249 1.22210 1.03784 0.81270 0.91628 1.22821 0.99245 1.00467 0.91353 1.22975 0.96541 1.00638 0.96589 1.22770 0.98734 0.99600 0.96070 1.22874 1.00936 0.96586 0.95834 1.22388 0.99991 0.97866 0.81980 1.22458 0.98182 1.00153 0.97594 1.20436 0.91622 0.95767 0.84788 0.92768 1.42810 1.78507 1.10001 1.07692 1.19012 1.33553 0.94682 0.87434 0.91834 1.25376 1.02870 1.01724 0.95499 1.69859 1.54575 1.37538 1.01488 0.85547 0.78574 0.81827 0.76612 1.20601 1.22784 1.18326 0.93736 0.91161 0.92033 0.89012 0.89250 0.79652 0.76722 0.89189 0.86750 0.90620 0.89034 0.92623 0.90339 0.89696 0.91504 0.88424 0.88833 0.87123 0.91489 0.93553 0.80576 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.03 71.98 0.65 -3.00 16 2 C -0.10 -2.91 2.44 -10.86 -0.03 -2.93 16 3 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 4 C 0.13 3.08 5.70 86.22 0.49 3.57 16 5 N -0.59 -14.27 2.98 -823.92 -2.45 -16.72 16 6 C 0.59 15.53 7.43 86.59 0.64 16.17 16 7 O -0.56 -17.17 14.26 -4.13 -0.06 -17.23 16 8 C -0.05 -1.31 6.38 40.79 0.26 -1.05 16 9 C -0.19 -3.56 8.59 22.66 0.19 -3.36 16 10 C -0.01 -0.10 12.03 85.18 1.02 0.93 16 11 N -0.29 -6.60 11.90 -57.13 -0.68 -7.28 16 12 N -0.26 -6.04 3.35 -334.68 -1.12 -7.16 16 13 C 0.13 2.59 5.42 86.38 0.47 3.06 16 14 C -0.12 -2.23 3.66 -10.27 -0.04 -2.26 16 15 C -0.13 -2.01 7.63 31.12 0.24 -1.77 16 16 C -0.13 -1.74 8.08 31.12 0.25 -1.49 16 17 C -0.12 -1.82 7.64 31.12 0.24 -1.58 16 18 C 0.10 2.23 5.19 86.37 0.45 2.68 16 19 C -0.14 -4.34 5.66 30.67 0.17 -4.17 16 20 C 0.18 6.17 2.20 45.02 0.10 6.27 16 21 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 22 N -0.75 -32.72 4.21 -322.81 -1.36 -34.08 16 23 C -0.22 -11.63 10.41 84.03 0.87 -10.76 16 24 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 25 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 26 N -0.98 -61.82 13.97 21.65 0.30 -61.52 16 27 Si 0.95 45.10 27.73 68.60 1.90 47.00 16 28 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 29 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 30 H -0.26 -11.30 6.52 99.48 0.65 -10.65 16 31 H 0.04 1.42 7.36 -2.38 -0.02 1.40 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 2.25 7.00 -2.38 -0.02 2.24 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.19 2.61 6.54 -2.91 -0.02 2.59 16 37 H 0.22 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.09 1.95 7.39 -2.39 -0.02 1.94 16 39 H 0.11 1.84 7.87 -2.38 -0.02 1.82 16 40 H 0.08 1.84 7.53 -2.39 -0.02 1.83 16 41 H 0.09 1.27 7.91 -2.39 -0.02 1.25 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 46 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 47 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 48 H 0.11 2.21 4.34 -2.39 -0.01 2.20 16 49 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 50 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.36 15.73 5.37 -92.71 -0.50 15.23 16 52 H 0.26 15.44 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.95 403.60 3.35 -66.60 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.36 Total: 33.26 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 6.46 Total: -2.87 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -5.31 Total: -126.76 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.06 Total: -17.23 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Total: -69.95 3.35 -66.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036033405.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.628 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds