Wall clock time and date at job start Sat Apr 11 2020 08:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.52471 * 2 1 4 4 C 1.53191 * 109.49444 * 120.08161 * 2 1 3 5 5 N 1.46926 * 108.77299 * 174.58381 * 4 2 1 6 6 C 1.34785 * 120.62843 * 126.37068 * 5 4 2 7 7 O 1.21631 * 119.99862 * 354.88644 * 6 5 4 8 8 C 1.47164 * 119.99758 * 174.89197 * 6 5 4 9 9 C 1.38401 * 126.88585 * 99.88328 * 8 6 5 10 10 C 1.50696 * 127.32234 * 359.96914 * 9 8 6 11 11 C 1.53781 * 113.61814 * 219.14629 * 10 9 8 12 12 C 1.53956 * 87.01589 * 220.04768 * 11 10 9 13 13 C 1.53780 * 87.11659 * 25.36068 * 12 11 10 14 14 C 1.39673 * 105.35706 * 179.97438 * 9 8 6 15 15 N 1.30865 * 107.86308 * 359.97438 * 14 9 8 16 16 N 1.28441 * 110.92679 * 359.71429 * 15 14 9 17 17 C 1.46499 * 125.19169 * 180.28416 * 16 15 14 18 18 C 1.46925 * 118.74356 * 306.39201 * 5 4 2 19 19 C 1.53192 * 108.77107 * 53.60620 * 18 5 4 20 20 C 1.53035 * 109.31564 * 305.36841 * 19 18 5 21 21 H 1.09003 * 109.46128 * 301.34277 * 20 19 18 22 22 N 1.46500 * 109.46227 * 181.38791 * 20 19 18 23 23 C 1.36942 * 120.00252 * 84.99533 * 22 20 19 24 24 H 1.07997 * 119.99575 * 0.02562 * 23 22 20 25 25 C 1.38808 * 120.00040 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00323 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99854 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47184 * 90.00010 * 27 25 23 29 29 H 1.48504 * 109.47248 * 209.99656 * 27 25 23 30 30 H 1.48495 * 109.47278 * 329.99938 * 27 25 23 31 31 H 1.08998 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47072 * 300.08006 * 1 2 3 33 33 H 1.09001 * 109.46986 * 60.07996 * 1 2 3 34 34 H 1.09000 * 109.58908 * 294.37125 * 4 2 1 35 35 H 1.08997 * 109.58559 * 54.66213 * 4 2 1 36 36 H 1.09006 * 112.84864 * 350.33846 * 10 9 8 37 37 H 1.09000 * 113.60965 * 334.56227 * 11 10 9 38 38 H 1.08995 * 113.61995 * 105.46617 * 11 10 9 39 39 H 1.08997 * 113.53775 * 270.80077 * 12 11 10 40 40 H 1.09006 * 113.73951 * 139.94337 * 12 11 10 41 41 H 1.08996 * 113.61517 * 220.09554 * 13 12 11 42 42 H 1.08994 * 113.69009 * 89.19538 * 13 12 11 43 43 H 1.08001 * 126.06540 * 179.97438 * 14 9 8 44 44 H 1.09006 * 109.46779 * 275.19243 * 17 16 15 45 45 H 1.08997 * 109.46918 * 35.18856 * 17 16 15 46 46 H 1.08994 * 109.47280 * 155.19121 * 17 16 15 47 47 H 1.08997 * 109.58601 * 293.82690 * 18 5 4 48 48 H 1.08999 * 109.58719 * 173.39087 * 18 5 4 49 49 H 1.09002 * 109.50201 * 65.31804 * 19 18 5 50 50 H 1.09008 * 109.49888 * 185.41213 * 19 18 5 51 51 H 0.97002 * 120.00226 * 264.99758 * 22 20 19 52 52 H 0.97000 * 120.00149 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1696 6 6 4.2812 -0.3857 2.1780 7 8 3.7791 0.1910 3.1239 8 6 5.7366 -0.5991 2.1344 9 6 6.7005 0.3217 1.7623 10 6 6.4813 1.7450 1.3184 11 6 7.4049 2.1811 0.1688 12 6 7.5329 3.5341 0.8921 13 6 7.2064 2.7816 2.1928 14 6 7.9196 -0.3487 1.8853 15 7 7.6690 -1.5648 2.2988 16 7 6.4075 -1.7436 2.4604 17 6 5.7829 -2.9866 2.9196 18 6 4.1054 -1.4268 -0.0307 19 6 3.5709 -0.6951 -1.2659 20 6 2.0409 -0.7231 -1.2483 21 1 1.6967 -1.7572 -1.2353 22 7 1.5266 -0.0529 -2.4452 23 6 1.3952 -0.7495 -3.6169 24 1 1.6704 -1.7930 -3.6584 25 6 0.9084 -0.1144 -4.7511 26 7 0.5736 1.1575 -4.7007 27 14 0.7285 -1.0648 -6.3491 28 1 -0.6241 -1.6745 -6.4129 29 1 0.9097 -0.1410 -7.4977 30 1 1.7569 -2.1345 -6.4073 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5151 0.8892 33 1 -0.3633 0.5126 -0.8907 34 1 1.7638 -0.1580 2.1389 35 1 1.6033 -1.7207 1.2993 36 1 5.4303 1.9776 1.1463 37 1 8.3386 1.6207 0.1224 38 1 6.9009 2.2464 -0.7955 39 1 6.7700 4.2566 0.6022 40 1 8.5402 3.9502 0.8695 41 1 6.5423 3.3310 2.8601 42 1 8.0849 2.3853 2.7019 43 1 8.8958 0.0635 1.6764 44 1 5.6327 -3.6531 2.0702 45 1 6.4307 -3.4702 3.6507 46 1 4.8207 -2.7615 3.3794 47 1 3.8375 -2.4818 -0.0868 48 1 5.1896 -1.3246 0.0138 49 1 3.9159 0.3389 -1.2540 50 1 3.9335 -1.1897 -2.1671 51 1 1.2792 0.8843 -2.4079 52 1 0.2331 1.6012 -5.4932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036035610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:41 Heat of formation + Delta-G solvation = 55.064837 kcal Electronic energy + Delta-G solvation = -32098.570504 eV Core-core repulsion = 28099.830177 eV Total energy + Delta-G solvation = -3998.740327 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.62969 -41.15759 -39.47834 -39.04441 -36.24791 -34.57600 -34.24506 -33.13011 -32.13125 -31.04755 -28.58567 -27.71691 -26.81540 -26.43846 -26.14777 -24.75932 -23.21770 -23.06404 -22.31102 -21.15356 -20.15743 -19.96943 -19.07621 -18.75350 -17.79440 -16.89219 -16.80420 -16.65368 -16.55374 -16.10098 -15.75190 -15.53303 -15.43339 -15.27899 -14.94674 -14.49012 -14.35734 -13.99005 -13.94172 -13.76221 -13.68387 -13.45193 -13.27897 -13.20952 -13.08982 -12.98703 -12.86264 -12.77562 -12.50758 -12.14591 -12.11775 -11.88452 -11.85502 -11.68723 -11.55824 -11.35726 -11.29398 -11.19757 -11.17140 -10.87735 -10.13819 -9.84684 -9.62977 -8.96734 -7.90571 -5.18269 0.57077 1.01797 1.49403 1.49723 1.56143 1.57850 1.65248 2.01793 2.58289 3.20820 3.42921 3.45195 3.71182 3.76462 3.77145 3.87823 3.93338 3.95418 4.02258 4.10619 4.20513 4.25300 4.26461 4.29061 4.31240 4.44727 4.50070 4.54264 4.62836 4.68320 4.72451 4.75044 4.78055 4.86859 4.90330 4.92171 4.98326 4.99602 5.11849 5.13718 5.15866 5.25491 5.36967 5.38842 5.46877 5.49754 5.55564 5.59020 5.61592 5.76083 6.13476 6.30714 6.81563 7.03917 7.37566 8.13158 8.36234 9.32965 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011235 B = 0.003231 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.658259 B = 8664.209220 C = 9379.145872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.050 0.950 4 C 0.125 3.875 5 N -0.589 5.589 6 C 0.597 3.403 7 O -0.562 6.562 8 C -0.041 4.041 9 C -0.146 4.146 10 C -0.047 4.047 11 C -0.125 4.125 12 C -0.135 4.135 13 C -0.123 4.123 14 C 0.009 3.991 15 N -0.293 5.293 16 N -0.274 5.274 17 C 0.078 3.922 18 C 0.122 3.878 19 C -0.139 4.139 20 C 0.182 3.818 21 H 0.053 0.947 22 N -0.731 5.731 23 C -0.231 4.231 24 H 0.078 0.922 25 C -0.073 4.073 26 N -0.970 5.970 27 Si 0.965 3.035 28 H -0.290 1.290 29 H -0.301 1.301 30 H -0.269 1.269 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.209 0.791 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.042 0.958 50 H 0.066 0.934 51 H 0.370 0.630 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.014 -5.687 16.414 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.069 0.931 4 C 0.003 3.997 5 N -0.320 5.320 6 C 0.382 3.618 7 O -0.440 6.440 8 C -0.170 4.170 9 C -0.157 4.157 10 C -0.067 4.067 11 C -0.162 4.162 12 C -0.173 4.173 13 C -0.161 4.161 14 C -0.168 4.168 15 N -0.124 5.124 16 N -0.062 5.062 17 C -0.061 4.061 18 C -0.001 4.001 19 C -0.180 4.180 20 C 0.073 3.927 21 H 0.071 0.929 22 N -0.370 5.370 23 C -0.363 4.363 24 H 0.096 0.904 25 C -0.266 4.266 26 N -0.621 5.621 27 Si 0.795 3.205 28 H -0.217 1.217 29 H -0.228 1.228 30 H -0.193 1.193 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.226 0.774 44 H 0.123 0.877 45 H 0.133 0.867 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.099 0.901 49 H 0.060 0.940 50 H 0.084 0.916 51 H 0.202 0.798 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.162 -6.740 17.133 23.228 hybrid contribution -0.992 1.040 -1.497 2.075 sum 13.171 -5.700 15.636 21.223 Atomic orbital electron populations 1.21572 0.93592 1.02263 1.01286 1.21605 0.96915 0.99027 0.94461 0.93128 1.21769 0.77618 1.02157 0.98126 1.48170 1.07265 1.58819 1.17724 1.17228 0.84341 0.78064 0.82147 1.90800 1.74703 1.42750 1.35709 1.21211 0.93051 0.90605 1.12099 1.20693 0.91830 0.96526 1.06670 1.20856 0.98801 0.88552 0.98485 1.22999 0.99706 0.97182 0.96358 1.22818 1.02756 0.96134 0.95545 1.22934 1.00312 0.96224 0.96587 1.23707 0.99599 0.89478 1.03970 1.73124 0.97578 1.21389 1.20294 1.45797 1.03072 1.10754 1.46625 1.22466 0.99020 0.81686 1.02899 1.21778 0.97881 0.97788 0.82623 1.22449 0.98797 0.99801 0.96906 1.20406 0.91148 0.95581 0.85570 0.92878 1.42579 1.76781 1.10855 1.06736 1.19590 1.33831 0.94387 0.88496 0.90402 1.25450 1.03132 0.96817 1.01165 1.69814 1.51992 1.11062 1.29258 0.85253 0.77842 0.77528 0.79833 1.21691 1.22800 1.19335 0.91924 0.91618 0.94123 0.89307 0.88506 0.91739 0.88106 0.92366 0.90744 0.89372 0.92313 0.88624 0.77426 0.87680 0.86704 0.89035 0.88877 0.90093 0.93950 0.91555 0.79782 0.94287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 9.03 71.99 0.65 -3.31 16 2 C -0.10 -3.12 2.46 -10.71 -0.03 -3.15 16 3 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.13 3.21 5.73 86.36 0.49 3.71 16 5 N -0.59 -15.28 2.97 -823.08 -2.45 -17.73 16 6 C 0.60 17.17 6.54 86.59 0.57 17.74 16 7 O -0.56 -19.72 16.52 -4.13 -0.07 -19.79 16 8 C -0.04 -1.06 4.66 40.79 0.19 -0.87 16 9 C -0.15 -3.56 5.48 -19.48 -0.11 -3.67 16 10 C -0.05 -1.12 4.11 -11.01 -0.05 -1.16 16 11 C -0.13 -2.43 7.60 31.18 0.24 -2.19 16 12 C -0.14 -2.34 8.09 31.18 0.25 -2.09 16 13 C -0.12 -2.39 7.62 31.12 0.24 -2.15 16 14 C 0.01 0.19 11.20 85.18 0.95 1.15 16 15 N -0.29 -6.64 11.90 -57.14 -0.68 -7.32 16 16 N -0.27 -6.00 3.75 -356.02 -1.33 -7.33 16 17 C 0.08 1.08 11.22 127.77 1.43 2.51 16 18 C 0.12 2.99 6.32 86.36 0.55 3.54 16 19 C -0.14 -4.48 5.66 30.67 0.17 -4.31 16 20 C 0.18 6.51 2.19 45.02 0.10 6.61 16 21 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 22 N -0.73 -34.67 4.41 -322.83 -1.42 -36.09 16 23 C -0.23 -12.13 9.93 84.03 0.83 -11.30 16 24 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 25 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 26 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 27 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 28 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 29 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 30 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.53 7.36 -2.39 -0.02 1.51 16 34 H 0.09 2.39 6.99 -2.39 -0.02 2.37 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.87 7.93 -2.38 -0.02 1.85 16 37 H 0.10 1.59 7.27 -2.39 -0.02 1.57 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.59 7.99 -2.39 -0.02 1.58 16 43 H 0.21 2.96 7.75 -2.91 -0.02 2.94 16 44 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.09 1.26 7.65 -2.39 -0.02 1.24 16 47 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.08 1.97 6.38 -2.39 -0.02 1.96 16 49 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 50 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 51 H 0.37 19.50 7.51 -92.71 -0.70 18.80 16 52 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -69.26 413.71 3.53 -65.73 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: 0.21 Total: 36.14 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 6.95 Total: -2.57 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -5.60 Total: -126.48 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.07 Total: -19.79 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.26 3.53 -65.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036035610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.800 kcal (2) G-P(sol) polarization free energy of solvation -69.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds