Wall clock time and date at job start Sat Apr 11 2020 08:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50059 * 2 1 4 4 C 1.53195 * 109.49899 * 120.10022 * 2 1 3 5 5 N 1.47207 * 108.85456 * 174.60016 * 4 2 1 6 6 C 1.34773 * 120.81153 * 126.34215 * 5 4 2 7 7 O 1.21281 * 120.00152 * 0.14258 * 6 5 4 8 8 C 1.50700 * 119.99924 * 180.13388 * 6 5 4 9 9 C 1.50702 * 109.47312 * 180.02562 * 8 6 5 10 10 C 1.34850 * 125.96373 * 124.71814 * 9 8 6 11 11 N 1.36314 * 106.68853 * 179.88927 * 10 9 8 12 12 C 1.35411 * 107.39686 * 0.41594 * 11 10 9 13 13 N 1.30088 * 108.63337 * 359.69388 * 12 11 10 14 14 C 1.51047 * 123.98239 * 179.67517 * 12 11 10 15 15 C 1.53398 * 108.20927 * 344.05544 * 14 12 11 16 16 C 1.53144 * 109.23944 * 48.82317 * 15 14 12 17 17 C 1.46475 * 127.77579 * 180.22844 * 11 10 9 18 18 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 19 19 C 1.53191 * 108.89109 * 53.54119 * 18 5 4 20 20 C 1.53035 * 109.31327 * 305.29292 * 19 18 5 21 21 H 1.09003 * 109.46332 * 181.39145 * 20 19 18 22 22 N 1.46505 * 109.46145 * 301.35706 * 20 19 18 23 23 C 1.36937 * 120.00261 * 275.00453 * 22 20 19 24 24 H 1.07999 * 119.99655 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00104 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00043 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99949 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47044 * 90.00110 * 27 25 23 29 29 H 1.48499 * 109.47173 * 209.99752 * 27 25 23 30 30 H 1.48494 * 109.47263 * 329.99767 * 27 25 23 31 31 H 1.08991 * 109.47122 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46483 * 300.06376 * 1 2 3 33 33 H 1.08994 * 109.46935 * 60.05876 * 1 2 3 34 34 H 1.08996 * 109.58670 * 294.37379 * 4 2 1 35 35 H 1.09002 * 109.58549 * 54.65190 * 4 2 1 36 36 H 1.09002 * 109.47628 * 300.00335 * 8 6 5 37 37 H 1.09003 * 109.47142 * 60.00485 * 8 6 5 38 38 H 1.08007 * 126.65504 * 359.97438 * 10 9 8 39 39 H 1.08997 * 109.71619 * 103.73249 * 14 12 11 40 40 H 1.09000 * 109.71354 * 224.33576 * 14 12 11 41 41 H 1.08998 * 109.51463 * 168.75754 * 15 14 12 42 42 H 1.09005 * 109.50737 * 288.89713 * 15 14 12 43 43 H 1.09002 * 109.46544 * 50.52161 * 16 15 14 44 44 H 1.09004 * 109.47273 * 170.50979 * 16 15 14 45 45 H 1.08997 * 109.58560 * 43.31674 * 17 11 10 46 46 H 1.09005 * 109.69887 * 282.97094 * 17 11 10 47 47 H 1.09002 * 109.58861 * 293.68122 * 18 5 4 48 48 H 1.08996 * 109.58519 * 173.40013 * 18 5 4 49 49 H 1.09003 * 109.49975 * 65.24379 * 19 18 5 50 50 H 1.09004 * 109.49655 * 185.34207 * 19 18 5 51 51 H 0.96995 * 119.99683 * 95.00026 * 22 20 19 52 52 H 0.96995 * 120.00130 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 1.2494 5 7 3.5075 -0.8304 1.1711 6 6 4.2864 -0.3882 2.1781 7 8 3.7808 0.1021 3.1655 8 6 5.7856 -0.5032 2.0774 9 6 6.4175 0.0588 3.3248 10 6 7.2770 -0.5884 4.1378 11 7 7.6010 0.2808 5.1366 12 6 6.9224 1.4303 4.9089 13 7 6.2185 1.2895 3.8240 14 6 7.0025 2.6483 5.7985 15 6 7.6180 2.2240 7.1380 16 6 8.8864 1.4073 6.8743 17 6 8.5057 0.0531 6.2658 18 6 4.1053 -1.4268 -0.0313 19 6 3.5708 -0.6947 -1.2663 20 6 2.0408 -0.7227 -1.2486 21 1 1.6581 -0.2238 -2.1390 22 7 1.5782 -2.1127 -1.2312 23 6 1.4467 -2.8053 -2.4051 24 1 1.6836 -2.3267 -3.3439 25 6 1.0090 -4.1224 -2.3886 26 7 0.7207 -4.7058 -1.2445 27 14 0.8289 -5.0670 -3.9901 28 1 2.1061 -5.7563 -4.3045 29 1 -0.2553 -6.0724 -3.8526 30 1 0.4927 -4.1233 -5.0862 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5149 0.8895 33 1 -0.3633 0.5129 -0.8905 34 1 1.7638 -0.1587 2.1388 35 1 1.6033 -1.7211 1.2988 36 1 6.0634 -1.5518 1.9707 37 1 6.1354 0.0555 1.2093 38 1 7.6395 -1.5990 4.0196 39 1 7.6300 3.4059 5.3291 40 1 6.0026 3.0497 5.9634 41 1 7.8702 3.1105 7.7199 42 1 6.9021 1.6161 7.6913 43 1 9.5297 1.9491 6.1809 44 1 9.4173 1.2474 7.8128 45 1 9.4039 -0.4565 5.9174 46 1 8.0074 -0.5583 7.0183 47 1 3.8375 -2.4819 -0.0876 48 1 5.1898 -1.3269 0.0118 49 1 3.9159 0.3392 -1.2540 50 1 3.9333 -1.1891 -2.1675 51 1 1.3652 -2.5423 -0.3881 52 1 0.4145 -5.6261 -1.2329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036042472.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:09:45 Heat of formation + Delta-G solvation = 29.023441 kcal Electronic energy + Delta-G solvation = -31003.047180 eV Core-core repulsion = 27003.177613 eV Total energy + Delta-G solvation = -3999.869567 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.37384 -39.74404 -37.61365 -36.79065 -34.09932 -33.39159 -32.87147 -31.69972 -31.23984 -29.16130 -29.04857 -27.80310 -25.89589 -24.76143 -23.97994 -23.37708 -22.48938 -21.53454 -20.74966 -19.37404 -19.06013 -17.98086 -17.30637 -16.98635 -16.69309 -15.99323 -15.42967 -15.26041 -14.71881 -14.54926 -14.39049 -14.34449 -14.15313 -13.91547 -13.82608 -13.79757 -13.22724 -13.09106 -13.00688 -12.58408 -12.44797 -12.16448 -11.99784 -11.88216 -11.56135 -11.45903 -11.37752 -11.35365 -11.25337 -11.09390 -10.87538 -10.71150 -10.38991 -10.34235 -10.15169 -9.82471 -9.75607 -9.50596 -9.48306 -9.26934 -8.88191 -8.20905 -8.01333 -6.92692 -5.75312 -3.03237 1.99222 2.64699 3.06700 3.13669 3.43452 3.49508 3.50754 3.59669 4.02963 4.16949 4.23705 4.30864 4.60609 4.72762 4.85462 4.91638 4.98344 5.03046 5.05716 5.22612 5.29739 5.33915 5.36965 5.43636 5.46694 5.47626 5.55242 5.60718 5.66733 5.67624 5.73138 5.83643 5.91452 5.93558 6.05484 6.18535 6.20406 6.27199 6.36324 6.41098 6.52578 6.60237 6.70481 6.77785 6.78812 6.87608 7.03359 7.13919 7.15636 7.72132 7.94992 8.20131 8.43477 8.69806 9.54903 10.12897 10.48194 11.47189 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002189 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.134183 B =12786.130693 C =13405.220471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.122 3.878 5 N -0.607 5.607 6 C 0.517 3.483 7 O -0.535 6.535 8 C -0.053 4.053 9 C 0.023 3.977 10 C -0.052 4.052 11 N -0.459 5.459 12 C 0.203 3.797 13 N -0.457 5.457 14 C -0.032 4.032 15 C -0.126 4.126 16 C -0.134 4.134 17 C 0.104 3.896 18 C 0.114 3.886 19 C -0.150 4.150 20 C 0.179 3.821 21 H 0.049 0.951 22 N -0.719 5.719 23 C -0.234 4.234 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.173 0.827 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.068 0.932 49 H 0.048 0.952 50 H 0.073 0.927 51 H 0.384 0.616 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.819 12.064 15.306 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C 0.000 4.000 5 N -0.341 5.341 6 C 0.304 3.696 7 O -0.411 6.411 8 C -0.094 4.094 9 C -0.107 4.107 10 C -0.185 4.185 11 N -0.143 5.143 12 C -0.060 4.060 13 N -0.175 5.175 14 C -0.071 4.071 15 C -0.164 4.164 16 C -0.172 4.172 17 C -0.018 4.018 18 C -0.008 4.008 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.219 1.219 29 H -0.220 1.220 30 H -0.209 1.209 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.190 0.810 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.219 0.781 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.115 12.798 15.435 26.362 hybrid contribution 0.431 -1.676 -0.485 1.797 sum 17.546 11.123 14.950 25.594 Atomic orbital electron populations 1.21663 0.94413 1.03068 1.00329 1.21690 0.96328 0.98895 0.95882 0.91672 1.21600 0.78878 1.01169 0.98340 1.48177 1.06934 1.60659 1.18287 1.20306 0.88714 0.77856 0.82723 1.90674 1.75302 1.44155 1.30979 1.19904 0.92376 1.01951 0.95145 1.20001 1.00326 0.91703 0.98645 1.22193 1.06242 0.97474 0.92571 1.45260 1.35482 1.12687 1.20895 1.23241 0.95973 0.89844 0.96925 1.69944 1.20497 1.18721 1.08296 1.20152 1.03270 0.91745 0.91944 1.21675 0.96817 1.00797 0.97070 1.21890 0.98670 0.94722 1.01896 1.21925 0.93356 0.99025 0.87524 1.21691 0.96333 0.98897 0.83918 1.22511 1.00404 0.98685 0.97489 1.20214 0.90855 0.87277 0.94834 0.93259 1.42485 1.78958 1.07763 1.06892 1.19227 1.36915 0.93826 0.86608 0.91283 1.24701 1.02464 0.97219 0.96546 1.69653 1.51901 1.12975 1.23609 0.86238 0.77226 0.79822 0.83173 1.21894 1.21952 1.20895 0.91113 0.93838 0.92918 0.90085 0.90984 0.88046 0.88097 0.80962 0.89534 0.88724 0.90038 0.91107 0.90635 0.89415 0.89397 0.89964 0.89897 0.91329 0.93293 0.90887 0.78079 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.05 37.16 0.34 -2.00 16 2 C -0.11 -1.89 2.67 -90.50 -0.24 -2.13 16 3 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 4 C 0.12 2.24 5.43 -3.56 -0.02 2.22 16 5 N -0.61 -10.51 2.98 -172.54 -0.51 -11.03 16 6 C 0.52 9.15 7.69 -10.99 -0.08 9.07 16 7 O -0.53 -11.40 15.00 5.56 0.08 -11.31 16 8 C -0.05 -0.74 4.61 -29.03 -0.13 -0.87 16 9 C 0.02 0.35 5.87 -82.72 -0.49 -0.14 16 10 C -0.05 -0.63 11.53 -16.76 -0.19 -0.82 16 11 N -0.46 -5.00 3.13 -113.75 -0.36 -5.36 16 12 C 0.20 2.62 7.65 -155.25 -1.19 1.43 16 13 N -0.46 -7.55 10.62 -6.88 -0.07 -7.63 16 14 C -0.03 -0.28 6.33 -27.51 -0.17 -0.46 16 15 C -0.13 -0.72 5.96 -26.45 -0.16 -0.88 16 16 C -0.13 -0.63 5.94 -26.52 -0.16 -0.79 16 17 C 0.10 0.66 6.98 -3.92 -0.03 0.63 16 18 C 0.11 1.86 6.07 -3.71 -0.02 1.83 16 19 C -0.15 -2.54 5.78 -26.61 -0.15 -2.69 16 20 C 0.18 3.44 2.53 -67.89 -0.17 3.26 16 21 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 22 N -0.72 -16.80 3.64 -53.39 -0.19 -16.99 16 23 C -0.23 -6.17 9.93 -15.06 -0.15 -6.32 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 27 Si 0.90 21.93 29.55 -169.99 -5.02 16.91 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 31 H 0.07 1.38 7.53 -51.93 -0.39 0.98 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.52 7.02 -51.93 -0.36 1.16 16 35 H 0.07 1.43 6.64 -51.93 -0.35 1.09 16 36 H 0.10 1.15 7.91 -51.93 -0.41 0.74 16 37 H 0.10 1.27 7.69 -51.93 -0.40 0.87 16 38 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 43 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 44 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.08 1.57 7.74 -51.93 -0.40 1.17 16 48 H 0.07 0.90 5.93 -51.93 -0.31 0.59 16 49 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.38 9.66 5.93 -40.82 -0.24 9.42 16 52 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 403.31 15.07 6.08 6.08 Total: -1.00 -34.81 403.31 -11.14 -45.95 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -8.74 Total: 9.09 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -3.12 Total: 0.89 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.41 Total: -67.60 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.81 -11.14 -45.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036042472.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.972 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds