Wall clock time and date at job start Sat Apr 11 2020 08:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.49592 * 2 1 4 4 C 1.53199 * 109.51924 * 120.07843 * 2 1 3 5 5 N 1.46922 * 108.76985 * 174.60006 * 4 2 1 6 6 C 1.34781 * 120.62928 * 126.41401 * 5 4 2 7 7 O 1.21633 * 120.00021 * 354.86707 * 6 5 4 8 8 C 1.47164 * 120.00205 * 174.86701 * 6 5 4 9 9 C 1.37195 * 127.04523 * 99.56524 * 8 6 5 10 10 C 1.40088 * 105.88423 * 179.97438 * 9 8 6 11 11 N 1.30116 * 107.72500 * 0.24964 * 10 9 8 12 12 N 1.28827 * 110.77712 * 359.87435 * 11 10 9 13 13 C 1.46502 * 125.14441 * 179.97438 * 12 11 10 14 14 C 1.50859 * 123.21802 * 179.85982 * 10 9 8 15 15 C 1.53600 * 108.11375 * 343.04878 * 14 10 9 16 16 C 1.53036 * 109.69058 * 51.03923 * 15 14 10 17 17 C 1.50385 * 129.90914 * 0.31031 * 9 8 6 18 18 C 1.46926 * 118.74498 * 306.39090 * 5 4 2 19 19 C 1.53187 * 108.77216 * 53.60824 * 18 5 4 20 20 C 1.53040 * 109.31453 * 305.36411 * 19 18 5 21 21 H 1.08996 * 109.46533 * 301.34970 * 20 19 18 22 22 N 1.46503 * 109.45900 * 181.38602 * 20 19 18 23 23 C 1.36934 * 119.99954 * 85.00355 * 22 20 19 24 24 H 1.07999 * 119.99926 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99986 * 179.97438 * 23 22 20 26 26 N 1.31613 * 120.00145 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99737 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47181 * 90.00299 * 27 25 23 29 29 H 1.48507 * 109.46742 * 209.99955 * 27 25 23 30 30 H 1.48503 * 109.47072 * 329.99785 * 27 25 23 31 31 H 1.08998 * 109.47231 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47582 * 300.06713 * 1 2 3 33 33 H 1.09000 * 109.46744 * 60.07180 * 1 2 3 34 34 H 1.08994 * 109.58544 * 294.38886 * 4 2 1 35 35 H 1.09001 * 109.58826 * 54.81826 * 4 2 1 36 36 H 1.08999 * 109.46977 * 275.00135 * 13 12 11 37 37 H 1.09002 * 109.47416 * 35.00615 * 13 12 11 38 38 H 1.09001 * 109.47120 * 155.00274 * 13 12 11 39 39 H 1.08993 * 109.72481 * 103.28740 * 14 10 9 40 40 H 1.08995 * 109.72012 * 223.94330 * 14 10 9 41 41 H 1.08998 * 109.65834 * 290.87589 * 15 14 10 42 42 H 1.08996 * 109.27446 * 170.96547 * 15 14 10 43 43 H 1.08996 * 109.43884 * 168.29379 * 16 15 14 44 44 H 1.08995 * 109.40092 * 48.39918 * 16 15 14 45 45 H 1.09007 * 109.72875 * 283.26217 * 17 9 8 46 46 H 1.08998 * 109.73936 * 43.94763 * 17 9 8 47 47 H 1.09000 * 109.58042 * 293.82327 * 18 5 4 48 48 H 1.09002 * 109.58957 * 173.39890 * 18 5 4 49 49 H 1.09007 * 109.49616 * 185.41777 * 19 18 5 50 50 H 1.09002 * 109.50044 * 65.32333 * 19 18 5 51 51 H 0.97003 * 119.99984 * 264.99964 * 22 20 19 52 52 H 0.96999 * 120.00669 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7237 1.2495 5 7 3.5052 -0.8284 1.1690 6 6 4.2818 -0.3853 2.1776 7 8 3.7797 0.1907 3.1239 8 6 5.7373 -0.5985 2.1339 9 6 6.6949 0.3101 1.7603 10 6 7.9222 -0.3539 1.8833 11 7 7.6785 -1.5640 2.2948 12 7 6.4131 -1.7468 2.4526 13 6 5.7911 -2.9937 2.9050 14 6 9.2473 0.2927 1.5640 15 6 8.9756 1.5469 0.7200 16 6 7.9208 2.4145 1.4104 17 6 6.5471 1.7371 1.3092 18 6 4.1059 -1.4256 -0.0314 19 6 3.5708 -0.6941 -1.2664 20 6 2.0408 -0.7229 -1.2485 21 1 1.6971 -1.7572 -1.2353 22 7 1.5260 -0.0530 -2.4453 23 6 1.3946 -0.7496 -3.6168 24 1 1.6709 -1.7928 -3.6587 25 6 0.9063 -0.1149 -4.7507 26 7 0.5700 1.1566 -4.6999 27 14 0.7264 -1.0654 -6.3487 28 1 -0.6255 -1.6766 -6.4116 29 1 0.9058 -0.1412 -7.4972 30 1 1.7560 -2.1339 -6.4076 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3633 0.5127 -0.8906 34 1 1.7643 -0.1580 2.1388 35 1 1.6063 -1.7217 1.2980 36 1 5.6420 -3.6557 2.0520 37 1 6.4400 -3.4801 3.6334 38 1 4.8284 -2.7731 3.3662 39 1 9.7566 0.5639 2.4887 40 1 9.8658 -0.3990 0.9921 41 1 8.6148 1.2543 -0.2660 42 1 9.8992 2.1160 0.6135 43 1 7.8805 3.3904 0.9267 44 1 8.1862 2.5407 2.4600 45 1 6.1996 1.7625 0.2764 46 1 5.8336 2.2540 1.9509 47 1 3.8386 -2.4808 -0.0873 48 1 5.1902 -1.3231 0.0128 49 1 3.9334 -1.1887 -2.1677 50 1 3.9155 0.3399 -1.2546 51 1 1.2781 0.8841 -2.4078 52 1 0.2284 1.6000 -5.4921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036049847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:03 Heat of formation + Delta-G solvation = 40.941183 kcal Electronic energy + Delta-G solvation = -32068.895678 eV Core-core repulsion = 28069.542903 eV Total energy + Delta-G solvation = -3999.352775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.78418 -39.96628 -37.69295 -37.16795 -34.70286 -33.13052 -32.73792 -31.98055 -31.53541 -29.58596 -29.19625 -27.49908 -26.50439 -25.15597 -23.63907 -23.19748 -22.30809 -21.92240 -21.65934 -19.78622 -19.29946 -18.83425 -17.51837 -17.12070 -16.67558 -16.01517 -15.83015 -15.18034 -15.04269 -14.73501 -14.44878 -14.12617 -13.97485 -13.81806 -13.78897 -13.37718 -13.30045 -13.11927 -13.04598 -12.93844 -12.63679 -12.49870 -12.33045 -11.96435 -11.81799 -11.65595 -11.38912 -11.24714 -10.99948 -10.97609 -10.91995 -10.86021 -10.69683 -10.46868 -10.30775 -10.23422 -10.11479 -9.79353 -9.67618 -9.07235 -8.93949 -8.65777 -8.63348 -7.00933 -5.81344 -3.10289 1.58007 2.01705 2.52368 2.61214 3.03687 3.39508 3.44958 3.46648 4.10705 4.26747 4.53900 4.66028 4.73563 4.77009 4.83941 4.94535 5.00274 5.09791 5.16358 5.18516 5.19296 5.28970 5.35988 5.41236 5.43809 5.46109 5.51701 5.54064 5.62151 5.69383 5.76427 5.80120 5.86890 5.92101 5.98307 6.00982 6.07507 6.13655 6.20338 6.25552 6.28998 6.37844 6.42506 6.50007 6.55925 6.67826 6.75185 6.86434 6.99244 7.29297 7.64635 7.95912 7.99707 8.36663 9.48336 10.05158 10.40128 11.41041 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.003107 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.535725 B = 9008.489823 C = 9865.697613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.071 0.929 4 C 0.119 3.881 5 N -0.592 5.592 6 C 0.592 3.408 7 O -0.529 6.529 8 C -0.012 4.012 9 C -0.153 4.153 10 C 0.035 3.965 11 N -0.278 5.278 12 N -0.287 5.287 13 C 0.092 3.908 14 C -0.030 4.030 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.049 4.049 18 C 0.109 3.891 19 C -0.149 4.149 20 C 0.185 3.815 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.240 4.240 24 H 0.069 0.931 25 C -0.011 4.011 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.504 -4.029 15.312 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.003 4.003 5 N -0.325 5.325 6 C 0.376 3.624 7 O -0.405 6.405 8 C -0.139 4.139 9 C -0.164 4.164 10 C -0.125 4.125 11 N -0.108 5.108 12 N -0.075 5.075 13 C -0.049 4.049 14 C -0.069 4.069 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.087 4.087 18 C -0.014 4.014 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.371 4.371 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.095 0.905 50 H 0.080 0.920 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.613 -5.021 16.002 21.601 hybrid contribution -0.593 0.309 -1.226 1.396 sum 13.020 -4.712 14.776 20.250 Atomic orbital electron populations 1.21658 0.93934 1.01795 1.01979 1.21747 0.96694 1.00156 0.94401 0.91057 1.21817 0.77536 1.01110 0.99825 1.48167 1.07273 1.59211 1.17800 1.17076 0.83727 0.78964 0.82607 1.90819 1.73910 1.41398 1.34347 1.20840 0.93519 0.89288 1.10241 1.20312 0.91249 0.97535 1.07256 1.21846 0.96495 0.90207 1.03998 1.72779 0.97357 1.20368 1.20297 1.45640 1.02842 1.10174 1.48838 1.22100 0.98673 0.82503 1.01587 1.20028 0.90580 0.95953 1.00300 1.21622 0.99202 0.95463 0.99229 1.21565 0.94082 0.98505 1.01138 1.20030 0.97931 0.89326 1.01430 1.21876 0.97718 0.97179 0.84664 1.22678 1.00377 1.00492 0.95505 1.20186 0.90226 0.95682 0.86489 0.93430 1.42393 1.76419 1.11418 1.05748 1.19201 1.36072 0.94078 0.87745 0.91279 1.24719 1.01980 0.95981 0.98015 1.69650 1.49824 1.09457 1.28982 0.86237 0.77782 0.78708 0.83721 1.21750 1.21801 1.20817 0.93039 0.93745 0.90643 0.89118 0.91167 0.89675 0.88571 0.89161 0.90227 0.90316 0.91248 0.91061 0.91206 0.91719 0.90400 0.90716 0.91498 0.90716 0.90492 0.92020 0.78167 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.03 37.16 0.34 -1.78 16 2 C -0.11 -1.74 2.46 -90.49 -0.22 -1.96 16 3 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.12 1.64 5.73 -3.71 -0.02 1.62 16 5 N -0.59 -8.22 2.97 -174.13 -0.52 -8.73 16 6 C 0.59 8.92 6.83 -12.63 -0.09 8.83 16 7 O -0.53 -9.45 16.52 5.25 0.09 -9.36 16 8 C -0.01 -0.17 4.65 -82.32 -0.38 -0.56 16 9 C -0.15 -2.07 6.02 -104.46 -0.63 -2.70 16 10 C 0.03 0.44 7.13 -82.55 -0.59 -0.15 16 11 N -0.28 -3.72 11.89 33.65 0.40 -3.32 16 12 N -0.29 -3.61 3.77 -64.10 -0.24 -3.85 16 13 C 0.09 0.79 11.22 59.85 0.67 1.46 16 14 C -0.03 -0.28 6.32 -27.49 -0.17 -0.45 16 15 C -0.12 -0.99 5.86 -26.40 -0.15 -1.14 16 16 C -0.12 -1.07 5.88 -26.46 -0.16 -1.23 16 17 C -0.05 -0.59 6.22 -27.78 -0.17 -0.76 16 18 C 0.11 1.46 6.32 -3.71 -0.02 1.43 16 19 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 20 C 0.18 3.36 2.19 -67.89 -0.15 3.22 16 21 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 22 N -0.72 -16.82 4.41 -53.38 -0.24 -17.05 16 23 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 26 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 27 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 34 H 0.09 1.29 6.99 -51.93 -0.36 0.92 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.75 7.67 -51.93 -0.40 0.35 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 45 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.00 6.38 -51.93 -0.33 0.67 16 49 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.38 9.74 7.50 -40.82 -0.31 9.43 16 52 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 408.88 15.07 6.16 6.16 Total: -1.00 -31.92 408.88 -9.72 -41.64 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.93 Total: 7.93 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.15 Total: -3.61 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 0.13 Total: -59.46 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.92 -9.72 -41.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036049847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.579 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds