Wall clock time and date at job start Sat Apr 11 2020 08:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.49592 * 2 1 4 4 C 1.53199 * 109.51924 * 120.07843 * 2 1 3 5 5 N 1.46922 * 108.76985 * 174.60006 * 4 2 1 6 6 C 1.34781 * 120.62928 * 126.41401 * 5 4 2 7 7 O 1.21633 * 120.00021 * 354.86707 * 6 5 4 8 8 C 1.47164 * 120.00205 * 174.86701 * 6 5 4 9 9 C 1.37195 * 127.04523 * 99.56524 * 8 6 5 10 10 C 1.40088 * 105.88423 * 179.97438 * 9 8 6 11 11 N 1.30116 * 107.72500 * 0.24964 * 10 9 8 12 12 N 1.28827 * 110.77712 * 359.87435 * 11 10 9 13 13 C 1.46502 * 125.14441 * 179.97438 * 12 11 10 14 14 C 1.50859 * 123.21802 * 179.85982 * 10 9 8 15 15 C 1.53600 * 108.11375 * 343.04878 * 14 10 9 16 16 C 1.53036 * 109.69058 * 51.03923 * 15 14 10 17 17 C 1.50385 * 129.90914 * 0.31031 * 9 8 6 18 18 C 1.46926 * 118.74498 * 306.39090 * 5 4 2 19 19 C 1.53187 * 108.77216 * 53.60824 * 18 5 4 20 20 C 1.53040 * 109.31453 * 305.36411 * 19 18 5 21 21 H 1.08996 * 109.46533 * 301.34970 * 20 19 18 22 22 N 1.46503 * 109.45900 * 181.38602 * 20 19 18 23 23 C 1.36934 * 119.99954 * 85.00355 * 22 20 19 24 24 H 1.07999 * 119.99926 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99986 * 179.97438 * 23 22 20 26 26 N 1.31613 * 120.00145 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99737 * 180.02562 * 25 23 22 28 28 H 1.48497 * 109.47181 * 90.00299 * 27 25 23 29 29 H 1.48507 * 109.46742 * 209.99955 * 27 25 23 30 30 H 1.48503 * 109.47072 * 329.99785 * 27 25 23 31 31 H 1.08998 * 109.47231 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47582 * 300.06713 * 1 2 3 33 33 H 1.09000 * 109.46744 * 60.07180 * 1 2 3 34 34 H 1.08994 * 109.58544 * 294.38886 * 4 2 1 35 35 H 1.09001 * 109.58826 * 54.81826 * 4 2 1 36 36 H 1.08999 * 109.46977 * 275.00135 * 13 12 11 37 37 H 1.09002 * 109.47416 * 35.00615 * 13 12 11 38 38 H 1.09001 * 109.47120 * 155.00274 * 13 12 11 39 39 H 1.08993 * 109.72481 * 103.28740 * 14 10 9 40 40 H 1.08995 * 109.72012 * 223.94330 * 14 10 9 41 41 H 1.08998 * 109.65834 * 290.87589 * 15 14 10 42 42 H 1.08996 * 109.27446 * 170.96547 * 15 14 10 43 43 H 1.08996 * 109.43884 * 168.29379 * 16 15 14 44 44 H 1.08995 * 109.40092 * 48.39918 * 16 15 14 45 45 H 1.09007 * 109.72875 * 283.26217 * 17 9 8 46 46 H 1.08998 * 109.73936 * 43.94763 * 17 9 8 47 47 H 1.09000 * 109.58042 * 293.82327 * 18 5 4 48 48 H 1.09002 * 109.58957 * 173.39890 * 18 5 4 49 49 H 1.09007 * 109.49616 * 185.41777 * 19 18 5 50 50 H 1.09002 * 109.50044 * 65.32333 * 19 18 5 51 51 H 0.97003 * 119.99984 * 264.99964 * 22 20 19 52 52 H 0.96999 * 120.00669 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0419 -0.7237 1.2495 5 7 3.5052 -0.8284 1.1690 6 6 4.2818 -0.3853 2.1776 7 8 3.7797 0.1907 3.1239 8 6 5.7373 -0.5985 2.1339 9 6 6.6949 0.3101 1.7603 10 6 7.9222 -0.3539 1.8833 11 7 7.6785 -1.5640 2.2948 12 7 6.4131 -1.7468 2.4526 13 6 5.7911 -2.9937 2.9050 14 6 9.2473 0.2927 1.5640 15 6 8.9756 1.5469 0.7200 16 6 7.9208 2.4145 1.4104 17 6 6.5471 1.7371 1.3092 18 6 4.1059 -1.4256 -0.0314 19 6 3.5708 -0.6941 -1.2664 20 6 2.0408 -0.7229 -1.2485 21 1 1.6971 -1.7572 -1.2353 22 7 1.5260 -0.0530 -2.4453 23 6 1.3946 -0.7496 -3.6168 24 1 1.6709 -1.7928 -3.6587 25 6 0.9063 -0.1149 -4.7507 26 7 0.5700 1.1566 -4.6999 27 14 0.7264 -1.0654 -6.3487 28 1 -0.6255 -1.6766 -6.4116 29 1 0.9058 -0.1412 -7.4972 30 1 1.7560 -2.1339 -6.4076 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5148 0.8893 33 1 -0.3633 0.5127 -0.8906 34 1 1.7643 -0.1580 2.1388 35 1 1.6063 -1.7217 1.2980 36 1 5.6420 -3.6557 2.0520 37 1 6.4400 -3.4801 3.6334 38 1 4.8284 -2.7731 3.3662 39 1 9.7566 0.5639 2.4887 40 1 9.8658 -0.3990 0.9921 41 1 8.6148 1.2543 -0.2660 42 1 9.8992 2.1160 0.6135 43 1 7.8805 3.3904 0.9267 44 1 8.1862 2.5407 2.4600 45 1 6.1996 1.7625 0.2764 46 1 5.8336 2.2540 1.9509 47 1 3.8386 -2.4808 -0.0873 48 1 5.1902 -1.3231 0.0128 49 1 3.9334 -1.1887 -2.1677 50 1 3.9155 0.3399 -1.2546 51 1 1.2781 0.8841 -2.4078 52 1 0.2284 1.6000 -5.4921 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036049847.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:02 Heat of formation + Delta-G solvation = 22.563336 kcal Electronic energy + Delta-G solvation = -32069.692601 eV Core-core repulsion = 28069.542903 eV Total energy + Delta-G solvation = -4000.149698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.74163 -41.19565 -39.06807 -37.96997 -36.25740 -34.59120 -33.68153 -33.16529 -32.83210 -31.13464 -30.26736 -28.31883 -27.67980 -26.77177 -24.85548 -24.38533 -23.31346 -23.12382 -22.86886 -21.13070 -20.20976 -19.92219 -19.05796 -18.56234 -17.77279 -17.01418 -16.85577 -16.74413 -16.23954 -15.79852 -15.65626 -15.47442 -15.36627 -14.98498 -14.82396 -14.72084 -14.41392 -14.18434 -13.98275 -13.83466 -13.70277 -13.69362 -13.43097 -13.22171 -12.99444 -12.86390 -12.77959 -12.73465 -12.50994 -12.27337 -12.14652 -12.11382 -11.86095 -11.75149 -11.69307 -11.64966 -11.32541 -11.18624 -11.17656 -10.88000 -10.03570 -9.86224 -9.59919 -8.96961 -7.90653 -5.18316 0.55781 0.98299 1.49365 1.49703 1.52688 1.57799 1.58233 1.98598 2.58194 3.15950 3.29088 3.42651 3.75382 3.75827 3.90380 3.93133 4.01080 4.02152 4.04326 4.11193 4.24590 4.25094 4.30167 4.32917 4.43516 4.50057 4.54367 4.60796 4.62276 4.65703 4.67436 4.71954 4.74546 4.77461 4.91185 4.96968 4.99141 5.04471 5.15015 5.18533 5.21135 5.25813 5.29916 5.36561 5.46518 5.48296 5.55333 5.56698 5.59373 5.78450 6.11002 6.30602 6.78849 7.02679 7.37504 8.13056 8.36217 9.32846 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012043 B = 0.003107 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.535725 B = 9008.489823 C = 9865.697613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.052 0.948 4 C 0.126 3.874 5 N -0.588 5.588 6 C 0.598 3.402 7 O -0.561 6.561 8 C -0.031 4.031 9 C -0.168 4.168 10 C 0.027 3.973 11 N -0.289 5.289 12 N -0.285 5.285 13 C 0.082 3.918 14 C -0.030 4.030 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.050 4.050 18 C 0.122 3.878 19 C -0.139 4.139 20 C 0.182 3.818 21 H 0.053 0.947 22 N -0.730 5.730 23 C -0.231 4.231 24 H 0.078 0.922 25 C -0.074 4.074 26 N -0.970 5.970 27 Si 0.966 3.034 28 H -0.290 1.290 29 H -0.301 1.301 30 H -0.269 1.269 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.043 0.957 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.970 -5.947 16.155 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.070 0.930 4 C 0.004 3.996 5 N -0.319 5.319 6 C 0.384 3.616 7 O -0.439 6.439 8 C -0.158 4.158 9 C -0.179 4.179 10 C -0.132 4.132 11 N -0.119 5.119 12 N -0.073 5.073 13 C -0.057 4.057 14 C -0.068 4.068 15 C -0.150 4.150 16 C -0.149 4.149 17 C -0.089 4.089 18 C -0.001 4.001 19 C -0.180 4.180 20 C 0.073 3.927 21 H 0.071 0.929 22 N -0.369 5.369 23 C -0.363 4.363 24 H 0.096 0.904 25 C -0.266 4.266 26 N -0.621 5.621 27 Si 0.796 3.204 28 H -0.217 1.217 29 H -0.228 1.228 30 H -0.194 1.194 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.112 0.888 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 15.107 -7.000 16.871 23.704 hybrid contribution -1.042 0.881 -1.405 1.958 sum 14.065 -6.119 15.466 21.783 Atomic orbital electron populations 1.21569 0.93546 1.02262 1.01320 1.21614 0.96952 0.99099 0.94395 0.92981 1.21790 0.77441 1.02194 0.98207 1.48165 1.07330 1.58756 1.17637 1.17166 0.84133 0.78118 0.82210 1.90799 1.74606 1.42834 1.35646 1.20793 0.93005 0.90456 1.11561 1.20611 0.91764 0.98055 1.07475 1.22381 0.97494 0.89964 1.03407 1.72777 0.97686 1.20765 1.20687 1.45987 1.02565 1.10660 1.48109 1.22431 0.98985 0.81454 1.02877 1.20186 0.89209 0.96236 1.01198 1.21614 0.99891 0.95205 0.98324 1.21566 0.92682 0.98990 1.01670 1.20050 0.99367 0.89089 1.00354 1.21774 0.97730 0.97864 0.82691 1.22460 0.98888 0.99826 0.96827 1.20404 0.91069 0.95609 0.85608 0.92874 1.42573 1.76739 1.10882 1.06725 1.19586 1.33798 0.94408 0.88517 0.90428 1.25455 1.03131 0.96837 1.01178 1.69810 1.51915 1.11081 1.29289 0.85251 0.77837 0.77520 0.79831 1.21687 1.22783 1.19366 0.91954 0.91582 0.94088 0.89199 0.88488 0.87804 0.86869 0.88943 0.88912 0.89292 0.92145 0.88492 0.89992 0.91437 0.91308 0.92286 0.88842 0.90355 0.91544 0.93851 0.79745 0.94273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.03 71.98 0.65 -3.29 16 2 C -0.10 -3.13 2.46 -10.71 -0.03 -3.16 16 3 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 4 C 0.13 3.22 5.73 86.37 0.49 3.72 16 5 N -0.59 -15.45 2.97 -823.08 -2.45 -17.90 16 6 C 0.60 17.58 6.83 86.59 0.59 18.17 16 7 O -0.56 -19.89 16.52 -4.14 -0.07 -19.96 16 8 C -0.03 -0.85 4.65 40.44 0.19 -0.66 16 9 C -0.17 -4.47 6.02 -19.76 -0.12 -4.59 16 10 C 0.03 0.66 7.13 43.31 0.31 0.96 16 11 N -0.29 -7.26 11.89 -47.46 -0.56 -7.83 16 12 N -0.28 -6.72 3.77 -356.71 -1.34 -8.06 16 13 C 0.08 1.22 11.22 127.77 1.43 2.65 16 14 C -0.03 -0.49 6.32 30.10 0.19 -0.30 16 15 C -0.11 -1.68 5.86 30.81 0.18 -1.50 16 16 C -0.11 -1.95 5.88 30.77 0.18 -1.77 16 17 C -0.05 -1.22 6.22 29.91 0.19 -1.03 16 18 C 0.12 3.05 6.32 86.36 0.55 3.59 16 19 C -0.14 -4.51 5.66 30.67 0.17 -4.34 16 20 C 0.18 6.51 2.19 45.02 0.10 6.61 16 21 H 0.05 1.87 8.08 -2.39 -0.02 1.86 16 22 N -0.73 -34.59 4.41 -322.81 -1.42 -36.01 16 23 C -0.23 -12.13 9.93 84.04 0.83 -11.29 16 24 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 25 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 26 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 27 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 28 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 34 H 0.09 2.41 6.99 -2.39 -0.02 2.39 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.34 7.67 -2.39 -0.02 1.32 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 45 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.08 1.97 6.38 -2.39 -0.02 1.96 16 49 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 50 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.37 19.45 7.50 -92.71 -0.70 18.76 16 52 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -69.91 408.88 3.06 -66.85 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.21 Total: 33.71 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: 6.38 Total: 0.15 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.49 Total: -127.71 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.07 Total: -19.96 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.91 3.06 -66.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036049847.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.417 kcal (2) G-P(sol) polarization free energy of solvation -69.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds