Wall clock time and date at job start Sat Apr 11 2020 08:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.52244 * 2 1 4 4 C 1.53187 * 109.49606 * 120.08411 * 2 1 3 5 5 N 1.46926 * 108.89250 * 174.65493 * 4 2 1 6 6 C 1.34779 * 120.62878 * 126.29614 * 5 4 2 7 7 O 1.21623 * 120.00435 * 351.53630 * 6 5 4 8 8 C 1.47170 * 119.99841 * 171.53496 * 6 5 4 9 9 C 1.38401 * 126.88447 * 332.50924 * 8 6 5 10 10 C 1.39671 * 105.35927 * 179.91498 * 9 8 6 11 11 N 1.30869 * 107.86235 * 0.35157 * 10 9 8 12 12 N 1.28445 * 110.92205 * 359.77166 * 11 10 9 13 13 C 1.46500 * 125.18393 * 180.02562 * 12 11 10 14 14 C 1.54263 * 110.03700 * 50.84430 * 13 12 11 15 15 C 1.54960 * 104.16131 * 217.13690 * 14 13 12 16 16 C 1.54887 * 102.78212 * 37.88352 * 15 14 13 17 17 C 1.53872 * 110.03480 * 293.62290 * 13 12 11 18 18 C 1.46924 * 118.74095 * 306.32318 * 5 4 2 19 19 C 1.53194 * 108.77624 * 53.60396 * 18 5 4 20 20 C 1.53040 * 109.31232 * 305.36977 * 19 18 5 21 21 H 1.09001 * 109.45816 * 181.37224 * 20 19 18 22 22 N 1.46503 * 109.45778 * 301.34036 * 20 19 18 23 23 C 1.36933 * 120.00170 * 275.00436 * 22 20 19 24 24 H 1.08000 * 119.99908 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99968 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99672 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00042 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47214 * 90.00116 * 27 25 23 29 29 H 1.48495 * 109.47230 * 210.00511 * 27 25 23 30 30 H 1.48500 * 109.46958 * 330.00276 * 27 25 23 31 31 H 1.08998 * 109.46807 * 299.91140 * 1 2 3 32 32 H 1.08997 * 109.47058 * 59.91694 * 1 2 3 33 33 H 1.08999 * 109.46644 * 179.91814 * 1 2 3 34 34 H 1.09003 * 109.58976 * 54.79774 * 4 2 1 35 35 H 1.08997 * 109.58882 * 294.51498 * 4 2 1 36 36 H 1.07996 * 127.32130 * 0.02681 * 9 8 6 37 37 H 1.07993 * 126.07150 * 180.09056 * 10 9 8 38 38 H 1.09004 * 110.01557 * 172.23772 * 13 12 11 39 39 H 1.09004 * 110.48286 * 335.78281 * 14 13 12 40 40 H 1.08992 * 110.48778 * 98.42143 * 14 13 12 41 41 H 1.09006 * 110.71976 * 279.56675 * 15 14 13 42 42 H 1.09006 * 110.76734 * 156.22154 * 15 14 13 43 43 H 1.08998 * 110.49020 * 203.40804 * 16 15 14 44 44 H 1.09004 * 110.48406 * 80.76363 * 16 15 14 45 45 H 1.09001 * 110.03790 * 238.57722 * 17 13 12 46 46 H 1.09007 * 110.03193 * 0.02562 * 17 13 12 47 47 H 1.09001 * 109.58741 * 173.39230 * 18 5 4 48 48 H 1.09001 * 109.58659 * 293.67455 * 18 5 4 49 49 H 1.09002 * 109.49574 * 65.31378 * 19 18 5 50 50 H 1.09000 * 109.49563 * 185.37991 * 19 18 5 51 51 H 0.97003 * 119.99753 * 95.00234 * 22 20 19 52 52 H 0.97003 * 119.99511 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5048 -0.8292 1.1730 6 6 4.2790 -0.3845 2.1827 7 8 3.7833 0.2462 3.0968 8 6 5.7242 -0.6623 2.1790 9 6 6.3625 -1.7350 1.5812 10 6 7.7208 -1.5551 1.8521 11 7 7.8475 -0.4622 2.5607 12 7 6.7039 0.0840 2.7699 13 6 6.4841 1.3191 3.5265 14 6 7.4179 2.4311 3.0059 15 6 7.8258 3.2114 4.2811 16 6 7.9809 2.0876 5.3356 17 6 6.8414 1.1009 5.0072 18 6 4.1083 -1.4278 -0.0254 19 6 3.5766 -0.6973 -1.2626 20 6 2.0465 -0.7255 -1.2484 21 1 1.6659 -0.2276 -2.1402 22 7 1.5842 -2.1156 -1.2306 23 6 1.4555 -2.8094 -2.4041 24 1 1.6944 -2.3317 -3.3428 25 6 1.0169 -4.1263 -2.3873 26 7 0.8936 -4.7933 -3.5152 27 14 0.6029 -4.9522 -0.7637 28 1 -0.8311 -4.7315 -0.4475 29 1 0.8682 -6.4096 -0.8679 30 1 1.4426 -4.3721 0.3150 31 1 -0.3633 0.5125 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3632 -1.0277 -0.0015 34 1 1.6052 -1.7217 1.2979 35 1 1.7616 -0.1594 2.1390 36 1 5.9072 -2.5392 1.0223 37 1 8.5236 -2.2050 1.5367 38 1 5.4439 1.6321 3.4357 39 1 8.2960 1.9984 2.5264 40 1 6.8858 3.0826 2.3128 41 1 7.0415 3.9098 4.5733 42 1 8.7713 3.7322 4.1296 43 1 7.8598 2.4891 6.3417 44 1 8.9499 1.5992 5.2328 45 1 5.9749 1.3088 5.6350 46 1 7.1788 0.0761 5.1628 47 1 5.1925 -1.3255 0.0215 48 1 3.8429 -2.4836 -0.0797 49 1 3.9215 0.3366 -1.2508 50 1 3.9418 -1.1925 -2.1623 51 1 1.3692 -2.5444 -0.3875 52 1 0.5875 -5.7137 -3.5034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036056611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:30 Heat of formation + Delta-G solvation = 59.176771 kcal Electronic energy + Delta-G solvation = -32149.851819 eV Core-core repulsion = 28151.289798 eV Total energy + Delta-G solvation = -3998.562021 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72546 -39.99730 -38.23736 -37.80773 -34.61585 -33.09501 -32.40638 -31.60646 -30.84269 -29.81021 -29.12560 -27.87489 -26.54618 -25.49862 -23.34036 -22.55301 -22.37671 -21.75062 -21.09516 -20.74805 -19.19630 -18.54148 -17.91096 -17.25103 -16.58112 -16.25935 -15.84993 -15.50903 -15.16769 -14.73405 -14.66838 -14.50972 -14.12856 -13.82324 -13.72289 -13.67759 -13.62192 -13.29106 -12.89817 -12.63176 -12.34290 -12.10641 -11.98886 -11.78773 -11.65243 -11.52089 -11.50850 -11.47044 -11.24070 -11.03713 -10.97796 -10.94062 -10.80459 -10.64965 -10.48859 -10.25505 -9.95620 -9.89722 -9.59197 -9.24067 -9.04777 -8.90848 -8.45129 -7.32151 -5.82115 -3.17621 1.26918 2.21236 2.55688 3.04077 3.13299 3.30796 3.34022 3.41304 4.06908 4.17610 4.35834 4.53059 4.53145 4.66141 4.95007 5.01559 5.04101 5.08257 5.09474 5.13646 5.19663 5.21886 5.27625 5.30609 5.44493 5.48041 5.51358 5.52884 5.56573 5.61994 5.67731 5.68990 5.72728 5.80349 5.83872 5.86477 5.88770 5.97406 6.01068 6.16682 6.25753 6.32468 6.38216 6.45766 6.52464 6.62235 6.69643 6.70416 6.82017 7.41622 7.94056 7.97456 8.09958 8.36896 9.14837 9.87405 10.07115 11.36269 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003004 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.253925 B = 9319.438852 C = 9892.598168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.119 3.881 5 N -0.585 5.585 6 C 0.588 3.412 7 O -0.551 6.551 8 C -0.032 4.032 9 C -0.191 4.191 10 C -0.006 4.006 11 N -0.277 5.277 12 N -0.252 5.252 13 C 0.140 3.860 14 C -0.132 4.132 15 C -0.121 4.121 16 C -0.121 4.121 17 C -0.127 4.127 18 C 0.095 3.905 19 C -0.148 4.148 20 C 0.184 3.816 21 H 0.061 0.939 22 N -0.743 5.743 23 C -0.241 4.241 24 H 0.091 0.909 25 C 0.007 3.993 26 N -0.933 5.933 27 Si 0.878 3.122 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.167 0.833 37 H 0.186 0.814 38 H 0.124 0.876 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.081 0.919 51 H 0.360 0.640 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.753 13.832 14.396 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 H 0.090 0.910 4 C -0.003 4.003 5 N -0.316 5.316 6 C 0.375 3.625 7 O -0.431 6.431 8 C -0.160 4.160 9 C -0.220 4.220 10 C -0.182 4.182 11 N -0.110 5.110 12 N -0.039 5.039 13 C 0.039 3.961 14 C -0.170 4.170 15 C -0.159 4.159 16 C -0.158 4.158 17 C -0.166 4.166 18 C -0.027 4.027 19 C -0.189 4.189 20 C 0.074 3.926 21 H 0.079 0.921 22 N -0.387 5.387 23 C -0.370 4.370 24 H 0.108 0.892 25 C -0.189 4.189 26 N -0.580 5.580 27 Si 0.709 3.291 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.184 0.816 37 H 0.202 0.798 38 H 0.142 0.858 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.194 0.806 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.218 14.879 15.220 25.055 hybrid contribution -0.917 -1.569 0.513 1.888 sum 12.301 13.310 15.733 24.000 Atomic orbital electron populations 1.21669 0.94038 1.02844 1.01025 1.21809 0.96573 0.99302 0.95431 0.90987 1.21718 0.77889 1.01323 0.99354 1.47839 1.06968 1.59288 1.17546 1.16968 0.83987 0.79176 0.82368 1.90742 1.74750 1.40991 1.36589 1.21431 0.91532 0.97507 1.05538 1.22498 0.94044 1.00380 1.05088 1.23584 0.96890 0.96319 1.01361 1.73080 1.08286 1.11073 1.18511 1.45885 1.02197 1.19181 1.36676 1.22575 1.02775 0.79777 0.90943 1.22762 0.99768 0.95955 0.98545 1.22474 1.01774 0.97400 0.94224 1.22343 0.98659 0.95855 0.98984 1.22455 0.99540 1.01045 0.93535 1.22310 0.98397 0.98584 0.83384 1.22496 0.99863 0.99001 0.97575 1.20250 0.90980 0.86155 0.95189 0.92124 1.42834 1.80668 1.09346 1.05850 1.19046 1.37555 0.94173 0.86274 0.89156 1.24638 1.01540 0.96711 0.96000 1.69690 1.53047 1.10845 1.24447 0.86668 0.78479 0.79326 0.84656 1.21084 1.21745 1.20493 0.93464 0.92203 0.91655 0.91149 0.89297 0.81597 0.79750 0.85830 0.89519 0.90735 0.90994 0.90800 0.91163 0.91073 0.90171 0.90743 0.88990 0.89940 0.93028 0.90007 0.80632 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.07 37.16 0.34 -1.64 16 2 C -0.11 -1.65 2.69 -90.34 -0.24 -1.90 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.83 5.42 -3.71 -0.02 1.81 16 5 N -0.59 -8.91 2.97 -174.13 -0.52 -9.42 16 6 C 0.59 9.19 7.46 -12.63 -0.09 9.10 16 7 O -0.55 -9.51 14.49 5.26 0.08 -9.43 16 8 C -0.03 -0.45 6.39 -82.06 -0.52 -0.98 16 9 C -0.19 -2.42 8.60 -38.99 -0.34 -2.76 16 10 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 11 N -0.28 -3.58 11.07 30.59 0.34 -3.24 16 12 N -0.25 -3.31 3.03 -49.61 -0.15 -3.46 16 13 C 0.14 1.59 3.48 -66.82 -0.23 1.35 16 14 C -0.13 -1.23 6.50 -25.04 -0.16 -1.39 16 15 C -0.12 -0.87 6.91 -24.70 -0.17 -1.04 16 16 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 17 C -0.13 -1.27 6.55 -25.61 -0.17 -1.43 16 18 C 0.09 1.41 4.92 -3.71 -0.02 1.39 16 19 C -0.15 -2.32 5.78 -26.61 -0.15 -2.47 16 20 C 0.18 3.19 2.54 -67.73 -0.17 3.01 16 21 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 22 N -0.74 -15.70 3.46 -53.23 -0.18 -15.88 16 23 C -0.24 -6.24 10.41 -15.06 -0.16 -6.40 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 25 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 26 N -0.93 -28.15 13.97 55.49 0.78 -27.37 16 27 Si 0.88 21.16 27.74 -169.99 -4.71 16.45 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.06 7.55 -51.93 -0.39 0.67 16 34 H 0.07 1.15 6.64 -51.93 -0.34 0.81 16 35 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 36 H 0.17 1.93 6.49 -52.49 -0.34 1.59 16 37 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.12 1.56 6.05 -51.93 -0.31 1.25 16 39 H 0.09 0.89 7.42 -51.93 -0.39 0.51 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.85 7.91 -51.92 -0.41 0.44 16 47 H 0.09 1.22 4.32 -51.93 -0.22 1.00 16 48 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 51 H 0.36 7.64 3.79 -40.82 -0.15 7.48 16 52 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 395.51 15.07 5.96 5.96 Total: -1.00 -30.75 395.51 -9.42 -40.18 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.42 Total: 10.84 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -2.59 Total: -4.61 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.26 Total: -59.38 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.71 Total: 16.45 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.75 -9.42 -40.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036056611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.356 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds