Wall clock time and date at job start Sat Apr 11 2020 08:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.52244 * 2 1 4 4 C 1.53187 * 109.49606 * 120.08411 * 2 1 3 5 5 N 1.46926 * 108.89250 * 174.65493 * 4 2 1 6 6 C 1.34779 * 120.62878 * 126.29614 * 5 4 2 7 7 O 1.21623 * 120.00435 * 351.53630 * 6 5 4 8 8 C 1.47170 * 119.99841 * 171.53496 * 6 5 4 9 9 C 1.38401 * 126.88447 * 332.50924 * 8 6 5 10 10 C 1.39671 * 105.35927 * 179.91498 * 9 8 6 11 11 N 1.30869 * 107.86235 * 0.35157 * 10 9 8 12 12 N 1.28445 * 110.92205 * 359.77166 * 11 10 9 13 13 C 1.46500 * 125.18393 * 180.02562 * 12 11 10 14 14 C 1.54263 * 110.03700 * 50.84430 * 13 12 11 15 15 C 1.54960 * 104.16131 * 217.13690 * 14 13 12 16 16 C 1.54887 * 102.78212 * 37.88352 * 15 14 13 17 17 C 1.53872 * 110.03480 * 293.62290 * 13 12 11 18 18 C 1.46924 * 118.74095 * 306.32318 * 5 4 2 19 19 C 1.53194 * 108.77624 * 53.60396 * 18 5 4 20 20 C 1.53040 * 109.31232 * 305.36977 * 19 18 5 21 21 H 1.09001 * 109.45816 * 181.37224 * 20 19 18 22 22 N 1.46503 * 109.45778 * 301.34036 * 20 19 18 23 23 C 1.36933 * 120.00170 * 275.00436 * 22 20 19 24 24 H 1.08000 * 119.99908 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99968 * 180.02562 * 23 22 20 26 26 N 1.31618 * 119.99672 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00042 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47214 * 90.00116 * 27 25 23 29 29 H 1.48495 * 109.47230 * 210.00511 * 27 25 23 30 30 H 1.48500 * 109.46958 * 330.00276 * 27 25 23 31 31 H 1.08998 * 109.46807 * 299.91140 * 1 2 3 32 32 H 1.08997 * 109.47058 * 59.91694 * 1 2 3 33 33 H 1.08999 * 109.46644 * 179.91814 * 1 2 3 34 34 H 1.09003 * 109.58976 * 54.79774 * 4 2 1 35 35 H 1.08997 * 109.58882 * 294.51498 * 4 2 1 36 36 H 1.07996 * 127.32130 * 0.02681 * 9 8 6 37 37 H 1.07993 * 126.07150 * 180.09056 * 10 9 8 38 38 H 1.09004 * 110.01557 * 172.23772 * 13 12 11 39 39 H 1.09004 * 110.48286 * 335.78281 * 14 13 12 40 40 H 1.08992 * 110.48778 * 98.42143 * 14 13 12 41 41 H 1.09006 * 110.71976 * 279.56675 * 15 14 13 42 42 H 1.09006 * 110.76734 * 156.22154 * 15 14 13 43 43 H 1.08998 * 110.49020 * 203.40804 * 16 15 14 44 44 H 1.09004 * 110.48406 * 80.76363 * 16 15 14 45 45 H 1.09001 * 110.03790 * 238.57722 * 17 13 12 46 46 H 1.09007 * 110.03193 * 0.02562 * 17 13 12 47 47 H 1.09001 * 109.58741 * 173.39230 * 18 5 4 48 48 H 1.09001 * 109.58659 * 293.67455 * 18 5 4 49 49 H 1.09002 * 109.49574 * 65.31378 * 19 18 5 50 50 H 1.09000 * 109.49563 * 185.37991 * 19 18 5 51 51 H 0.97003 * 119.99753 * 95.00234 * 22 20 19 52 52 H 0.97003 * 119.99511 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2495 5 7 3.5048 -0.8292 1.1730 6 6 4.2790 -0.3845 2.1827 7 8 3.7833 0.2462 3.0968 8 6 5.7242 -0.6623 2.1790 9 6 6.3625 -1.7350 1.5812 10 6 7.7208 -1.5551 1.8521 11 7 7.8475 -0.4622 2.5607 12 7 6.7039 0.0840 2.7699 13 6 6.4841 1.3191 3.5265 14 6 7.4179 2.4311 3.0059 15 6 7.8258 3.2114 4.2811 16 6 7.9809 2.0876 5.3356 17 6 6.8414 1.1009 5.0072 18 6 4.1083 -1.4278 -0.0254 19 6 3.5766 -0.6973 -1.2626 20 6 2.0465 -0.7255 -1.2484 21 1 1.6659 -0.2276 -2.1402 22 7 1.5842 -2.1156 -1.2306 23 6 1.4555 -2.8094 -2.4041 24 1 1.6944 -2.3317 -3.3428 25 6 1.0169 -4.1263 -2.3873 26 7 0.8936 -4.7933 -3.5152 27 14 0.6029 -4.9522 -0.7637 28 1 -0.8311 -4.7315 -0.4475 29 1 0.8682 -6.4096 -0.8679 30 1 1.4426 -4.3721 0.3150 31 1 -0.3633 0.5125 0.8908 32 1 -0.3633 0.5151 -0.8892 33 1 -0.3632 -1.0277 -0.0015 34 1 1.6052 -1.7217 1.2979 35 1 1.7616 -0.1594 2.1390 36 1 5.9072 -2.5392 1.0223 37 1 8.5236 -2.2050 1.5367 38 1 5.4439 1.6321 3.4357 39 1 8.2960 1.9984 2.5264 40 1 6.8858 3.0826 2.3128 41 1 7.0415 3.9098 4.5733 42 1 8.7713 3.7322 4.1296 43 1 7.8598 2.4891 6.3417 44 1 8.9499 1.5992 5.2328 45 1 5.9749 1.3088 5.6350 46 1 7.1788 0.0761 5.1628 47 1 5.1925 -1.3255 0.0215 48 1 3.8429 -2.4836 -0.0797 49 1 3.9215 0.3366 -1.2508 50 1 3.9418 -1.1925 -2.1623 51 1 1.3692 -2.5444 -0.3875 52 1 0.5875 -5.7137 -3.5034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036056611.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:29 Heat of formation + Delta-G solvation = 42.386363 kcal Electronic energy + Delta-G solvation = -32150.579906 eV Core-core repulsion = 28151.289798 eV Total energy + Delta-G solvation = -3999.290107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.70156 -41.24567 -39.19419 -38.93186 -36.08997 -34.66659 -33.28805 -33.22811 -31.90333 -31.49527 -29.83080 -28.67189 -27.74553 -26.88362 -25.11251 -23.65342 -23.37896 -23.00481 -21.90645 -21.59471 -20.38323 -19.84227 -19.66584 -18.41627 -17.73388 -17.19864 -16.85799 -16.63510 -16.44637 -16.17068 -15.92309 -15.64528 -15.32238 -15.10448 -14.99572 -14.87266 -14.49909 -14.44099 -14.34857 -14.03872 -13.63041 -13.32755 -13.07338 -12.93862 -12.89403 -12.77587 -12.67144 -12.50465 -12.18395 -12.11437 -12.08554 -12.05249 -12.01898 -11.93380 -11.68859 -11.61663 -11.55266 -11.21939 -11.14560 -10.91105 -10.24488 -9.94396 -9.72682 -9.22786 -7.96503 -5.27656 0.19811 1.22749 1.38065 1.40131 1.47212 1.60556 1.93018 1.99098 2.50887 3.22501 3.30128 3.35852 3.45454 3.61072 3.75012 3.76840 3.89015 3.96022 3.99291 4.11561 4.24019 4.26249 4.31366 4.34369 4.38417 4.41441 4.43199 4.55445 4.59205 4.66176 4.66972 4.75211 4.77239 4.81374 4.92104 4.93540 4.98127 5.05498 5.10221 5.11882 5.13712 5.14651 5.23218 5.25001 5.36676 5.41593 5.51999 5.56639 5.76508 5.85828 6.19797 6.27604 6.84138 7.06504 7.14026 7.90270 8.08901 9.25373 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017504 B = 0.003004 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.253925 B = 9319.438852 C = 9892.598168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.120 3.880 5 N -0.585 5.585 6 C 0.589 3.411 7 O -0.571 6.571 8 C -0.056 4.056 9 C -0.190 4.190 10 C -0.004 4.004 11 N -0.285 5.285 12 N -0.253 5.253 13 C 0.132 3.868 14 C -0.128 4.128 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.125 4.125 18 C 0.103 3.897 19 C -0.142 4.142 20 C 0.177 3.823 21 H 0.051 0.949 22 N -0.741 5.741 23 C -0.211 4.211 24 H 0.061 0.939 25 C -0.060 4.060 26 N -0.984 5.984 27 Si 0.940 3.060 28 H -0.283 1.283 29 H -0.301 1.301 30 H -0.255 1.255 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.175 0.825 37 H 0.216 0.784 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.111 0.889 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.362 0.638 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.080 15.414 16.457 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.002 4.002 5 N -0.316 5.316 6 C 0.377 3.623 7 O -0.451 6.451 8 C -0.184 4.184 9 C -0.219 4.219 10 C -0.179 4.179 11 N -0.118 5.118 12 N -0.041 5.041 13 C 0.031 3.969 14 C -0.166 4.166 15 C -0.152 4.152 16 C -0.153 4.153 17 C -0.164 4.164 18 C -0.019 4.019 19 C -0.182 4.182 20 C 0.069 3.931 21 H 0.069 0.931 22 N -0.385 5.385 23 C -0.342 4.342 24 H 0.079 0.921 25 C -0.251 4.251 26 N -0.636 5.636 27 Si 0.769 3.231 28 H -0.210 1.210 29 H -0.228 1.228 30 H -0.179 1.179 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.193 0.807 37 H 0.233 0.767 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.129 0.871 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.197 0.803 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.566 16.521 17.318 28.018 hybrid contribution -1.285 -1.960 -0.163 2.350 sum 13.280 14.561 17.155 26.128 Atomic orbital electron populations 1.21649 0.93491 1.01867 1.02330 1.21718 0.96957 0.99610 0.93690 0.89271 1.21693 0.78026 1.00836 0.99643 1.47828 1.06919 1.59257 1.17546 1.17132 0.84568 0.78639 0.81931 1.90727 1.75287 1.41891 1.37223 1.21420 0.91124 0.98747 1.07137 1.22684 0.94518 1.00024 1.04690 1.24130 0.97334 0.96069 1.00375 1.73092 1.08240 1.11607 1.18816 1.46074 1.01984 1.19494 1.36556 1.22735 1.02459 0.79901 0.91756 1.22745 0.98827 0.95468 0.99566 1.22484 1.02843 0.97140 0.92701 1.22329 0.97455 0.95391 1.00099 1.22444 1.00467 1.00692 0.92748 1.22230 0.99465 0.97333 0.82885 1.22369 0.98172 1.00245 0.97429 1.20462 0.92166 0.84145 0.96300 0.93126 1.42774 1.80739 1.10653 1.04287 1.18981 1.34536 0.93884 0.86831 0.92087 1.25304 1.03019 0.97723 0.99046 1.69860 1.55758 1.11051 1.26923 0.85644 0.78464 0.77582 0.81428 1.20974 1.22847 1.17940 0.91077 0.92070 0.93695 0.92188 0.88743 0.80743 0.76697 0.87381 0.90517 0.90407 0.89965 0.89310 0.89477 0.91340 0.90038 0.92485 0.87144 0.91627 0.90975 0.91388 0.80331 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.07 71.98 0.65 -2.98 16 2 C -0.10 -2.77 2.69 -10.61 -0.03 -2.80 16 3 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.12 3.46 5.42 86.36 0.47 3.93 16 5 N -0.58 -16.82 2.97 -823.08 -2.45 -19.27 16 6 C 0.59 17.65 7.46 86.59 0.65 18.29 16 7 O -0.57 -19.10 14.49 -4.11 -0.06 -19.15 16 8 C -0.06 -1.52 6.39 40.79 0.26 -1.26 16 9 C -0.19 -4.46 8.60 22.65 0.19 -4.26 16 10 C 0.00 -0.08 12.03 85.18 1.02 0.94 16 11 N -0.29 -6.89 11.07 -57.14 -0.63 -7.53 16 12 N -0.25 -6.37 3.03 -310.88 -0.94 -7.31 16 13 C 0.13 2.86 3.48 45.71 0.16 3.02 16 14 C -0.13 -2.18 6.50 31.69 0.21 -1.97 16 15 C -0.11 -1.37 6.91 31.91 0.22 -1.15 16 16 C -0.12 -1.54 6.83 31.67 0.22 -1.32 16 17 C -0.13 -2.36 6.55 31.32 0.21 -2.15 16 18 C 0.10 2.89 4.92 86.36 0.42 3.32 16 19 C -0.14 -4.22 5.78 30.67 0.18 -4.05 16 20 C 0.18 5.96 2.54 45.12 0.11 6.07 16 21 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 22 N -0.74 -30.84 3.46 -322.32 -1.11 -31.95 16 23 C -0.21 -11.08 10.41 84.04 0.87 -10.20 16 24 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 25 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 26 N -0.98 -61.15 13.97 21.65 0.30 -60.85 16 27 Si 0.94 44.00 27.74 68.60 1.90 45.90 16 28 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 29 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 30 H -0.25 -10.73 6.52 99.48 0.65 -10.08 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.04 1.39 7.55 -2.39 -0.02 1.37 16 34 H 0.06 1.86 6.64 -2.39 -0.02 1.85 16 35 H 0.09 2.65 7.00 -2.39 -0.02 2.64 16 36 H 0.18 3.70 6.49 -2.91 -0.02 3.69 16 37 H 0.22 2.95 8.06 -2.91 -0.02 2.93 16 38 H 0.11 2.68 6.05 -2.38 -0.01 2.66 16 39 H 0.08 1.47 7.42 -2.39 -0.02 1.45 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.26 7.91 -2.38 -0.02 1.25 16 47 H 0.11 2.72 4.32 -2.39 -0.01 2.71 16 48 H 0.07 2.10 7.74 -2.39 -0.02 2.08 16 49 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.36 14.92 3.79 -92.71 -0.35 14.57 16 52 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -67.23 395.51 3.80 -63.43 By element: Atomic # 1 Polarization: 35.68 SS G_CDS: 0.51 Total: 36.19 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 6.28 Total: 0.54 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -4.83 Total: -126.91 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.06 Total: -19.15 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.90 Total: 45.90 kcal Total: -67.23 3.80 -63.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036056611.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.814 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds