Wall clock time and date at job start Sat Apr 11 2020 08:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.52184 * 2 1 4 4 C 1.53193 * 109.49588 * 239.91766 * 2 1 3 5 5 N 1.46925 * 108.89150 * 185.48012 * 4 2 1 6 6 C 1.34775 * 120.63234 * 233.55941 * 5 4 2 7 7 O 1.21628 * 120.00070 * 0.49144 * 6 5 4 8 8 C 1.47161 * 120.00188 * 180.49054 * 6 5 4 9 9 C 1.38410 * 126.88267 * 25.51842 * 8 6 5 10 10 C 1.39672 * 105.36045 * 180.02562 * 9 8 6 11 11 N 1.30868 * 107.86104 * 359.97438 * 10 9 8 12 12 N 1.28438 * 110.92602 * 359.72043 * 11 10 9 13 13 C 1.46503 * 125.19174 * 180.28122 * 12 11 10 14 14 C 1.54257 * 110.03548 * 64.29682 * 13 12 11 15 15 C 1.54961 * 104.16144 * 217.14052 * 14 13 12 16 16 C 1.54885 * 102.77739 * 37.88843 * 15 14 13 17 17 C 1.53879 * 110.02739 * 307.08125 * 13 12 11 18 18 C 1.46931 * 118.73811 * 53.54123 * 5 4 2 19 19 C 1.53185 * 108.77301 * 306.38887 * 18 5 4 20 20 C 1.53043 * 109.31510 * 54.63386 * 19 18 5 21 21 H 1.09001 * 109.45486 * 58.65717 * 20 19 18 22 22 N 1.46505 * 109.46004 * 178.62610 * 20 19 18 23 23 C 1.36938 * 119.99736 * 275.00023 * 22 20 19 24 24 H 1.07998 * 120.00032 * 0.02562 * 23 22 20 25 25 C 1.38818 * 119.99383 * 180.02562 * 23 22 20 26 26 N 1.31614 * 120.00279 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99725 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47059 * 0.02562 * 27 25 23 29 29 H 1.48492 * 109.47252 * 119.99886 * 27 25 23 30 30 H 1.48495 * 109.47247 * 240.00381 * 27 25 23 31 31 H 1.09003 * 109.46752 * 180.08497 * 1 2 3 32 32 H 1.09006 * 109.46723 * 300.07656 * 1 2 3 33 33 H 1.08997 * 109.47377 * 60.07883 * 1 2 3 34 34 H 1.09004 * 109.58357 * 65.62781 * 4 2 1 35 35 H 1.08999 * 109.58759 * 305.34407 * 4 2 1 36 36 H 1.07994 * 127.31994 * 359.97438 * 9 8 6 37 37 H 1.07999 * 126.06996 * 179.97438 * 10 9 8 38 38 H 1.08997 * 110.01797 * 185.69172 * 13 12 11 39 39 H 1.09004 * 110.48493 * 335.78711 * 14 13 12 40 40 H 1.08997 * 110.48869 * 98.42912 * 14 13 12 41 41 H 1.09000 * 110.72207 * 279.57037 * 15 14 13 42 42 H 1.09005 * 110.92414 * 156.29697 * 15 14 13 43 43 H 1.09009 * 110.48440 * 203.40462 * 16 15 14 44 44 H 1.08997 * 110.60217 * 80.82315 * 16 15 14 45 45 H 1.09001 * 110.03254 * 238.57106 * 17 13 12 46 46 H 1.08997 * 110.03608 * 359.94772 * 17 13 12 47 47 H 1.09002 * 109.58662 * 66.17575 * 18 5 4 48 48 H 1.08997 * 109.58442 * 186.60288 * 18 5 4 49 49 H 1.08999 * 109.49863 * 174.58850 * 19 18 5 50 50 H 1.09003 * 109.50145 * 294.68134 * 19 18 5 51 51 H 0.96997 * 119.99623 * 95.00131 * 22 20 19 52 52 H 0.96995 * 120.00114 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5045 -0.8320 -1.1715 6 6 4.2806 -0.3907 -2.1811 7 8 3.7713 0.1109 -3.1652 8 6 5.7442 -0.5158 -2.0930 9 6 6.4556 -1.4424 -1.3507 10 6 7.8010 -1.1562 -1.5929 11 7 7.8534 -0.1394 -2.4150 12 7 6.6730 0.2555 -2.7321 13 6 6.3691 1.3665 -3.6373 14 6 6.8699 1.0415 -5.0596 15 6 7.3877 2.3990 -5.5987 16 6 8.0463 3.0349 -4.3494 17 6 7.1164 2.6337 -3.1858 18 6 4.1056 -1.4300 0.0285 19 6 3.5743 -0.6965 1.2639 20 6 2.0441 -0.7214 1.2483 21 1 1.6980 -1.7549 1.2364 22 7 1.5328 -0.0492 2.4454 23 6 1.4016 -0.7446 3.6177 24 1 1.6754 -1.7884 3.6600 25 6 0.9166 -0.1076 4.7518 26 7 0.5824 1.1643 4.7001 27 14 0.7382 -1.0560 6.3513 28 1 1.1791 -2.4592 6.1466 29 1 1.5777 -0.4217 7.3991 30 1 -0.6836 -1.0409 6.7797 31 1 -0.3633 -1.0277 0.0015 32 1 -0.3633 0.5151 0.8894 33 1 -0.3634 0.5126 -0.8907 34 1 1.7637 -0.1579 -2.1389 35 1 1.6032 -1.7207 -1.2993 36 1 6.0554 -2.2208 -0.7180 37 1 8.6478 -1.6809 -1.1758 38 1 5.2951 1.5521 -3.6529 39 1 7.6794 0.3125 -5.0218 40 1 6.0513 0.6722 -5.6772 41 1 6.5606 3.0135 -5.9544 42 1 8.1232 2.2490 -6.3891 43 1 8.0860 4.1196 -4.4495 44 1 9.0466 2.6302 -4.1953 45 1 6.4052 3.4344 -2.9831 46 1 7.7044 2.4222 -2.2928 47 1 3.8358 -2.4846 0.0855 48 1 5.1900 -1.3301 -0.0176 49 1 3.9371 -1.1912 2.1648 50 1 3.9214 0.3367 1.2509 51 1 1.2873 0.8884 2.4074 52 1 0.2432 1.6092 5.4925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036056616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:10:36 Heat of formation + Delta-G solvation = 43.613626 kcal Electronic energy + Delta-G solvation = -31612.458726 eV Core-core repulsion = 27613.221837 eV Total energy + Delta-G solvation = -3999.236889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.69194 -41.12753 -39.08539 -38.88061 -36.30099 -34.67622 -33.27440 -33.14213 -31.89642 -31.05820 -29.83665 -28.67113 -27.69812 -26.85957 -25.01898 -23.44574 -23.20761 -23.00577 -21.92515 -21.72505 -20.94299 -19.86063 -19.06647 -18.36842 -17.79716 -16.93176 -16.86627 -16.82902 -16.67912 -15.88827 -15.79554 -15.65241 -15.41266 -15.19693 -14.94533 -14.74303 -14.42078 -14.39860 -14.10505 -13.94119 -13.56776 -13.14740 -13.00573 -12.88812 -12.84832 -12.70038 -12.66994 -12.47639 -12.19426 -12.11981 -12.08029 -12.07338 -12.01756 -11.85213 -11.72997 -11.57389 -11.48785 -11.16184 -11.12858 -10.84262 -10.24143 -9.91403 -9.72805 -8.94749 -7.90237 -5.17616 0.22922 1.23704 1.49336 1.49824 1.59217 1.64940 1.94563 2.06394 2.58860 3.24914 3.30228 3.43831 3.45533 3.76380 3.78827 3.80359 3.89573 4.00103 4.07589 4.14420 4.26909 4.29916 4.34620 4.36642 4.37105 4.41720 4.47444 4.58337 4.64801 4.68629 4.75108 4.76632 4.79111 4.82440 4.84218 4.91846 4.98140 5.01199 5.03744 5.11081 5.14130 5.17619 5.29372 5.35373 5.40321 5.49186 5.55842 5.57544 5.62078 5.78235 6.21324 6.31419 6.87805 7.10122 7.37804 8.13909 8.36807 9.33671 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016570 B = 0.002543 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.382217 B =11007.006111 C =11356.795995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 H 0.049 0.951 4 C 0.128 3.872 5 N -0.585 5.585 6 C 0.586 3.414 7 O -0.575 6.575 8 C -0.058 4.058 9 C -0.193 4.193 10 C -0.005 4.005 11 N -0.290 5.290 12 N -0.257 5.257 13 C 0.130 3.870 14 C -0.123 4.123 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.130 4.130 18 C 0.082 3.918 19 C -0.141 4.141 20 C 0.179 3.821 21 H 0.053 0.947 22 N -0.732 5.732 23 C -0.226 4.226 24 H 0.080 0.920 25 C -0.079 4.079 26 N -0.972 5.972 27 Si 0.967 3.033 28 H -0.262 1.262 29 H -0.299 1.299 30 H -0.298 1.298 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.198 0.802 37 H 0.219 0.781 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.098 0.902 48 H 0.126 0.874 49 H 0.071 0.929 50 H 0.037 0.963 51 H 0.369 0.631 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.888 -3.703 -19.853 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.068 0.932 4 C 0.006 3.994 5 N -0.316 5.316 6 C 0.374 3.626 7 O -0.456 6.456 8 C -0.186 4.186 9 C -0.221 4.221 10 C -0.180 4.180 11 N -0.122 5.122 12 N -0.045 5.045 13 C 0.030 3.970 14 C -0.161 4.161 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.168 4.168 18 C -0.040 4.040 19 C -0.181 4.181 20 C 0.070 3.930 21 H 0.071 0.929 22 N -0.371 5.371 23 C -0.358 4.358 24 H 0.098 0.902 25 C -0.271 4.271 26 N -0.624 5.624 27 Si 0.797 3.203 28 H -0.187 1.187 29 H -0.227 1.227 30 H -0.226 1.226 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.214 0.786 37 H 0.235 0.765 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.143 0.857 49 H 0.089 0.911 50 H 0.056 0.944 51 H 0.201 0.799 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.307 -2.797 -20.898 26.054 hybrid contribution -1.164 -0.227 1.930 2.265 sum 14.142 -3.024 -18.967 23.852 Atomic orbital electron populations 1.21568 0.93676 1.02223 1.01241 1.21612 0.96823 0.98959 0.94597 0.93240 1.21704 0.77799 1.01916 0.97981 1.47871 1.07028 1.59127 1.17531 1.17177 0.84846 0.77763 0.82781 1.90729 1.75432 1.46913 1.32523 1.21480 0.91415 1.00892 1.04802 1.22918 0.93416 1.02513 1.03244 1.24228 0.98378 0.96260 0.99141 1.73099 1.05840 1.15815 1.17482 1.46053 1.01801 1.24334 1.32287 1.22724 1.01947 0.83512 0.88845 1.22672 1.01036 0.99896 0.92498 1.22487 1.00930 0.94037 0.97773 1.22306 0.98324 1.01582 0.92939 1.22490 0.99147 0.95041 1.00137 1.22858 1.01252 0.97916 0.81972 1.22463 0.98379 0.99701 0.97602 1.20462 0.91658 0.95502 0.85371 0.92912 1.42612 1.76986 1.10739 1.06740 1.19644 1.33385 0.94403 0.88336 0.90209 1.25492 1.03373 0.96898 1.01320 1.69824 1.52319 1.11087 1.29146 0.85158 0.76507 0.78458 0.80194 1.18655 1.22656 1.22614 0.92000 0.94116 0.91648 0.89412 0.89028 0.78574 0.76459 0.87483 0.91064 0.90878 0.90146 0.89266 0.89532 0.91145 0.90125 0.91723 0.88413 0.85660 0.91067 0.94408 0.79913 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.03 71.98 0.65 -3.38 16 2 C -0.10 -3.17 2.46 -10.71 -0.03 -3.19 16 3 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 4 C 0.13 3.41 5.71 86.36 0.49 3.90 16 5 N -0.59 -15.41 2.97 -823.09 -2.45 -17.86 16 6 C 0.59 16.96 7.53 86.59 0.65 17.61 16 7 O -0.57 -19.25 14.34 -4.12 -0.06 -19.30 16 8 C -0.06 -1.49 6.59 40.79 0.27 -1.22 16 9 C -0.19 -3.84 8.72 22.66 0.20 -3.64 16 10 C 0.00 -0.09 12.03 85.18 1.02 0.94 16 11 N -0.29 -6.88 11.04 -57.14 -0.63 -7.51 16 12 N -0.26 -6.50 3.06 -310.88 -0.95 -7.45 16 13 C 0.13 2.98 3.51 45.71 0.16 3.14 16 14 C -0.12 -2.31 6.52 31.69 0.21 -2.11 16 15 C -0.11 -1.54 6.91 31.91 0.22 -1.32 16 16 C -0.11 -1.63 6.83 31.67 0.22 -1.41 16 17 C -0.13 -2.53 6.46 31.32 0.20 -2.33 16 18 C 0.08 1.88 5.46 86.36 0.47 2.36 16 19 C -0.14 -4.46 5.66 30.67 0.17 -4.28 16 20 C 0.18 6.44 2.19 45.03 0.10 6.53 16 21 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 22 N -0.73 -34.91 4.41 -322.75 -1.42 -36.33 16 23 C -0.23 -11.86 9.93 84.03 0.83 -11.03 16 24 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 25 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 26 N -0.97 -58.85 13.06 21.65 0.28 -58.57 16 27 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 28 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 30 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 1.55 7.38 -2.38 -0.02 1.53 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 34 H 0.09 2.42 7.00 -2.39 -0.02 2.41 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.20 2.80 5.87 -2.91 -0.02 2.78 16 37 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.11 2.86 5.91 -2.39 -0.01 2.84 16 39 H 0.07 1.46 7.82 -2.38 -0.02 1.44 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 1.45 7.57 -2.39 -0.02 1.43 16 47 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.13 2.52 3.34 -2.39 -0.01 2.51 16 49 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 50 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.37 19.59 7.52 -92.71 -0.70 18.89 16 52 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -68.66 401.35 3.33 -65.33 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: 0.22 Total: 37.90 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 6.31 Total: -3.38 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -5.17 Total: -127.73 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.06 Total: -19.30 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -68.66 3.33 -65.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036056616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.939 kcal (2) G-P(sol) polarization free energy of solvation -68.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds