Wall clock time and date at job start Sat Apr 11 2020 08:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.50040 * 2 1 4 4 C 1.53195 * 109.49684 * 239.93937 * 2 1 3 5 5 N 1.46926 * 108.77580 * 185.37968 * 4 2 1 6 6 C 1.34782 * 120.63116 * 233.58678 * 5 4 2 7 7 O 1.21605 * 119.99674 * 174.36459 * 6 5 4 8 8 C 1.47427 * 119.99923 * 354.08519 * 6 5 4 9 9 C 1.38048 * 126.41567 * 319.55108 * 8 6 5 10 10 N 1.34257 * 107.41859 * 179.97438 * 9 8 6 11 11 C 1.46497 * 125.75360 * 179.97438 * 10 9 8 12 12 N 1.39931 * 108.49217 * 0.02562 * 10 9 8 13 13 C 1.30455 * 108.89566 * 359.75284 * 12 10 9 14 14 C 1.50701 * 125.98632 * 180.22964 * 13 12 10 15 15 C 1.53770 * 113.61604 * 39.31844 * 14 13 12 16 16 C 1.53958 * 87.02217 * 220.04593 * 15 14 13 17 17 C 1.53780 * 113.61480 * 301.70705 * 14 13 12 18 18 C 1.46923 * 118.73944 * 53.85905 * 5 4 2 19 19 C 1.53626 * 108.54372 * 306.09275 * 18 5 4 20 20 C 1.53039 * 109.52768 * 120.08301 * 2 1 3 21 21 H 1.08998 * 109.46031 * 301.35420 * 20 2 1 22 22 N 1.46496 * 109.45975 * 61.31235 * 20 2 1 23 23 C 1.36939 * 120.00190 * 205.00311 * 22 20 2 24 24 H 1.08000 * 119.99737 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00158 * 180.02562 * 23 22 20 26 26 N 1.31623 * 119.99661 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00093 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47237 * 89.99469 * 27 25 23 29 29 H 1.48500 * 109.46953 * 210.00038 * 27 25 23 30 30 H 1.48500 * 109.46928 * 329.99360 * 27 25 23 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46773 * 300.05769 * 1 2 3 33 33 H 1.08995 * 109.47349 * 60.06303 * 1 2 3 34 34 H 1.09004 * 109.58834 * 65.59354 * 4 2 1 35 35 H 1.08996 * 109.58743 * 305.16769 * 4 2 1 36 36 H 1.08005 * 126.28922 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.46727 * 90.00441 * 11 10 9 38 38 H 1.09000 * 109.47030 * 210.00041 * 11 10 9 39 39 H 1.09001 * 109.47634 * 330.00754 * 11 10 9 40 40 H 1.09000 * 112.84663 * 170.51595 * 14 13 12 41 41 H 1.08997 * 113.61666 * 334.56499 * 15 14 13 42 42 H 1.09004 * 113.61603 * 105.47242 * 15 14 13 43 43 H 1.08998 * 113.53579 * 270.81219 * 16 15 14 44 44 H 1.08997 * 113.66801 * 139.93146 * 16 15 14 45 45 H 1.09003 * 113.61402 * 254.53509 * 17 14 13 46 46 H 1.08994 * 113.61226 * 25.43853 * 17 14 13 47 47 H 1.09004 * 109.58721 * 65.92859 * 18 5 4 48 48 H 1.09000 * 109.58813 * 186.35438 * 18 5 4 49 49 H 1.08996 * 109.63398 * 294.86709 * 19 18 5 50 50 H 1.08999 * 109.43145 * 174.72280 * 19 18 5 51 51 H 0.97006 * 120.00190 * 25.00116 * 22 20 2 52 52 H 0.97004 * 119.99224 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5046 -0.8280 -1.1703 6 6 4.2807 -0.3847 -2.1792 7 8 5.4908 -0.3823 -2.0595 8 6 3.6626 0.0913 -3.4302 9 6 2.5835 -0.4752 -4.0784 10 7 2.3404 0.2621 -5.1738 11 6 1.2792 0.0156 -6.1533 12 7 3.2722 1.3048 -5.2228 13 6 4.0608 1.2157 -4.1874 14 6 5.1990 2.1470 -3.8584 15 6 4.8902 3.6247 -4.1512 16 6 6.3333 3.7392 -4.6751 17 6 6.2659 2.2301 -4.9628 18 6 4.1057 -1.4306 0.0273 19 6 3.5716 -0.6942 1.2653 20 6 2.0415 -0.7230 1.2481 21 1 1.6589 -0.2247 2.1388 22 7 1.5797 -2.1132 1.2305 23 6 1.4502 -2.8066 2.4042 24 1 1.6889 -2.3286 3.3429 25 6 1.0131 -4.1240 2.3875 26 7 0.7227 -4.7065 1.2435 27 14 0.8357 -5.0696 3.9886 28 1 -0.5362 -4.8819 4.5250 29 1 1.0769 -6.5136 3.7400 30 1 1.8257 -4.5649 4.9738 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8895 33 1 -0.3634 0.5128 -0.8905 34 1 1.7632 -0.1575 -2.1390 35 1 1.6057 -1.7213 -1.2983 36 1 2.0351 -1.3502 -3.7621 37 1 0.3774 0.5497 -5.8539 38 1 1.6010 0.3670 -7.1336 39 1 1.0697 -1.0530 -6.2010 40 1 5.6120 1.9759 -2.8643 41 1 4.1331 3.7681 -4.9221 42 1 4.7015 4.2171 -3.2558 43 1 7.0565 4.0049 -3.9041 44 1 6.4258 4.3511 -5.5724 45 1 7.1862 1.6980 -4.7217 46 1 5.8856 1.9915 -5.9560 47 1 3.8351 -2.4851 0.0809 48 1 5.1902 -1.3314 -0.0188 49 1 3.9161 0.3398 1.2533 50 1 3.9347 -1.1888 2.1661 51 1 1.3657 -2.5425 0.3874 52 1 0.4170 -5.6270 1.2319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036080780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:02 Heat of formation + Delta-G solvation = 74.595531 kcal Electronic energy + Delta-G solvation = -31975.344485 eV Core-core repulsion = 27977.451072 eV Total energy + Delta-G solvation = -3997.893413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.61658 -39.54953 -38.52859 -37.48613 -34.15564 -33.40072 -32.60588 -31.86784 -30.30042 -29.03981 -27.99334 -26.20881 -25.65415 -25.58971 -24.60344 -23.51464 -22.12177 -21.68023 -20.69906 -19.55501 -18.90562 -18.35827 -17.34733 -17.02992 -16.35398 -15.78939 -15.50485 -15.44277 -15.04220 -14.87486 -14.45520 -14.26285 -13.93299 -13.59084 -13.36924 -13.34029 -13.13022 -12.98249 -12.70757 -12.54339 -12.49676 -12.44494 -12.14792 -12.07931 -11.71517 -11.42409 -11.16015 -11.06259 -10.90480 -10.77717 -10.73803 -10.54962 -10.51572 -10.32576 -10.27425 -10.21047 -9.88482 -9.62390 -9.49319 -9.29647 -8.92390 -8.60325 -8.09821 -6.97382 -5.80359 -3.07728 1.55069 2.20804 2.24439 3.27154 3.41324 3.47725 3.48407 3.53527 4.22639 4.47312 4.57328 4.61753 4.64800 4.70538 4.86820 4.91775 4.93181 5.08792 5.12599 5.13573 5.28298 5.37479 5.45985 5.53136 5.61905 5.63535 5.66410 5.71904 5.74842 5.78296 5.82284 5.85102 5.92694 5.93143 5.98016 6.11412 6.13531 6.22011 6.37564 6.37673 6.44725 6.45767 6.54218 6.66336 6.73843 6.74967 6.82187 6.93683 7.07966 7.54666 7.68833 7.84403 8.38837 8.56030 9.50568 10.07090 10.42314 11.42365 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002925 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.796803 B = 9569.162190 C =10256.302938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.111 3.889 5 N -0.598 5.598 6 C 0.592 3.408 7 O -0.549 6.549 8 C -0.274 4.274 9 C 0.095 3.905 10 N -0.365 5.365 11 C 0.099 3.901 12 N -0.298 5.298 13 C 0.137 3.863 14 C -0.034 4.034 15 C -0.129 4.129 16 C -0.141 4.141 17 C -0.123 4.123 18 C 0.122 3.878 19 C -0.148 4.148 20 C 0.179 3.821 21 H 0.050 0.950 22 N -0.718 5.718 23 C -0.234 4.234 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.934 5.934 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.283 1.283 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.185 0.815 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 13.932 -14.758 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.380 3.620 7 O -0.428 6.428 8 C -0.289 4.289 9 C -0.055 4.055 10 N -0.143 5.143 11 C -0.043 4.043 12 N -0.120 5.120 13 C -0.030 4.030 14 C -0.054 4.054 15 C -0.167 4.167 16 C -0.178 4.178 17 C -0.161 4.161 18 C 0.000 4.000 19 C -0.189 4.189 20 C 0.069 3.931 21 H 0.068 0.932 22 N -0.361 5.361 23 C -0.365 4.365 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.583 5.583 27 Si 0.736 3.264 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.208 1.208 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.202 0.798 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.218 0.782 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.821 14.463 -15.689 21.524 hybrid contribution -0.344 -1.490 1.384 2.063 sum 2.477 12.972 -14.305 19.469 Atomic orbital electron populations 1.21671 0.94343 1.03120 1.00338 1.21695 0.96262 0.98947 0.95931 0.91585 1.21938 0.79531 1.01247 0.98545 1.47974 1.06812 1.59888 1.18247 1.17297 0.85994 0.76748 0.82005 1.90722 1.13850 1.56275 1.81962 1.20248 1.03244 1.03407 1.02012 1.23166 0.96420 0.97670 0.88236 1.48245 1.25356 1.21226 1.19476 1.21960 0.87662 1.02967 0.91668 1.77028 1.03742 1.08856 1.22332 1.22088 0.95459 0.94562 0.90850 1.21124 0.91435 0.91992 1.00895 1.22995 0.97398 0.94872 1.01478 1.22843 0.97122 0.96644 1.01228 1.22878 0.98557 0.96337 0.98370 1.21648 0.97838 0.97796 0.82719 1.22580 0.99899 0.98764 0.97673 1.20215 0.91048 0.87216 0.94636 0.93232 1.42451 1.79011 1.07735 1.06865 1.19224 1.36846 0.93850 0.86605 0.91271 1.24684 1.02420 0.97142 0.96605 1.69642 1.51980 1.13022 1.23638 0.86233 0.77707 0.79377 0.83130 1.21886 1.21916 1.20834 0.91011 0.92754 0.94066 0.90487 0.90667 0.79836 0.90257 0.89103 0.89076 0.86792 0.89505 0.91327 0.90014 0.91364 0.90968 0.89959 0.90102 0.90291 0.93350 0.90930 0.78220 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.06 37.16 0.34 -1.69 16 2 C -0.11 -1.68 2.67 -90.50 -0.24 -1.92 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.11 1.65 4.45 -3.71 -0.02 1.63 16 5 N -0.60 -9.89 2.97 -173.76 -0.52 -10.40 16 6 C 0.59 10.13 7.33 -12.52 -0.09 10.04 16 7 O -0.55 -10.88 15.52 5.27 0.08 -10.79 16 8 C -0.27 -4.05 5.21 -105.07 -0.55 -4.60 16 9 C 0.10 1.15 9.12 -16.56 -0.15 0.99 16 10 N -0.36 -4.04 3.98 -67.60 -0.27 -4.31 16 11 C 0.10 0.62 11.44 59.85 0.68 1.31 16 12 N -0.30 -3.95 12.13 33.90 0.41 -3.54 16 13 C 0.14 1.94 6.31 -82.02 -0.52 1.42 16 14 C -0.03 -0.43 3.96 -90.96 -0.36 -0.79 16 15 C -0.13 -1.35 7.63 -25.83 -0.20 -1.55 16 16 C -0.14 -1.29 8.09 -25.82 -0.21 -1.50 16 17 C -0.12 -1.36 7.63 -25.92 -0.20 -1.56 16 18 C 0.12 2.20 6.21 -3.49 -0.02 2.18 16 19 C -0.15 -2.62 5.80 -26.38 -0.15 -2.77 16 20 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -16.21 3.64 -53.39 -0.19 -16.41 16 23 C -0.23 -6.06 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 27 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 31 H 0.07 1.24 7.54 -51.93 -0.39 0.84 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.01 4.84 -51.93 -0.25 0.76 16 35 H 0.08 1.22 6.64 -51.93 -0.34 0.88 16 36 H 0.18 1.81 7.35 -52.48 -0.39 1.42 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 1.61 7.15 -51.93 -0.37 1.24 16 41 H 0.09 0.94 7.80 -51.93 -0.40 0.53 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 47 H 0.08 1.65 7.74 -51.93 -0.40 1.25 16 48 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.38 9.11 5.93 -40.82 -0.24 8.87 16 52 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -31.72 407.01 -9.37 -41.09 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.62 Total: 9.79 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.10 Total: -2.32 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.16 Total: -60.60 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.72 -9.37 -41.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.682 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds