Wall clock time and date at job start Sat Apr 11 2020 08:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.50040 * 2 1 4 4 C 1.53195 * 109.49684 * 239.93937 * 2 1 3 5 5 N 1.46926 * 108.77580 * 185.37968 * 4 2 1 6 6 C 1.34782 * 120.63116 * 233.58678 * 5 4 2 7 7 O 1.21605 * 119.99674 * 174.36459 * 6 5 4 8 8 C 1.47427 * 119.99923 * 354.08519 * 6 5 4 9 9 C 1.38048 * 126.41567 * 319.55108 * 8 6 5 10 10 N 1.34257 * 107.41859 * 179.97438 * 9 8 6 11 11 C 1.46497 * 125.75360 * 179.97438 * 10 9 8 12 12 N 1.39931 * 108.49217 * 0.02562 * 10 9 8 13 13 C 1.30455 * 108.89566 * 359.75284 * 12 10 9 14 14 C 1.50701 * 125.98632 * 180.22964 * 13 12 10 15 15 C 1.53770 * 113.61604 * 39.31844 * 14 13 12 16 16 C 1.53958 * 87.02217 * 220.04593 * 15 14 13 17 17 C 1.53780 * 113.61480 * 301.70705 * 14 13 12 18 18 C 1.46923 * 118.73944 * 53.85905 * 5 4 2 19 19 C 1.53626 * 108.54372 * 306.09275 * 18 5 4 20 20 C 1.53039 * 109.52768 * 120.08301 * 2 1 3 21 21 H 1.08998 * 109.46031 * 301.35420 * 20 2 1 22 22 N 1.46496 * 109.45975 * 61.31235 * 20 2 1 23 23 C 1.36939 * 120.00190 * 205.00311 * 22 20 2 24 24 H 1.08000 * 119.99737 * 359.97438 * 23 22 20 25 25 C 1.38816 * 120.00158 * 180.02562 * 23 22 20 26 26 N 1.31623 * 119.99661 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00093 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47237 * 89.99469 * 27 25 23 29 29 H 1.48500 * 109.46953 * 210.00038 * 27 25 23 30 30 H 1.48500 * 109.46928 * 329.99360 * 27 25 23 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46773 * 300.05769 * 1 2 3 33 33 H 1.08995 * 109.47349 * 60.06303 * 1 2 3 34 34 H 1.09004 * 109.58834 * 65.59354 * 4 2 1 35 35 H 1.08996 * 109.58743 * 305.16769 * 4 2 1 36 36 H 1.08005 * 126.28922 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.46727 * 90.00441 * 11 10 9 38 38 H 1.09000 * 109.47030 * 210.00041 * 11 10 9 39 39 H 1.09001 * 109.47634 * 330.00754 * 11 10 9 40 40 H 1.09000 * 112.84663 * 170.51595 * 14 13 12 41 41 H 1.08997 * 113.61666 * 334.56499 * 15 14 13 42 42 H 1.09004 * 113.61603 * 105.47242 * 15 14 13 43 43 H 1.08998 * 113.53579 * 270.81219 * 16 15 14 44 44 H 1.08997 * 113.66801 * 139.93146 * 16 15 14 45 45 H 1.09003 * 113.61402 * 254.53509 * 17 14 13 46 46 H 1.08994 * 113.61226 * 25.43853 * 17 14 13 47 47 H 1.09004 * 109.58721 * 65.92859 * 18 5 4 48 48 H 1.09000 * 109.58813 * 186.35438 * 18 5 4 49 49 H 1.08996 * 109.63398 * 294.86709 * 19 18 5 50 50 H 1.08999 * 109.43145 * 174.72280 * 19 18 5 51 51 H 0.97006 * 120.00190 * 25.00116 * 22 20 2 52 52 H 0.97004 * 119.99224 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2499 5 7 3.5046 -0.8280 -1.1703 6 6 4.2807 -0.3847 -2.1792 7 8 5.4908 -0.3823 -2.0595 8 6 3.6626 0.0913 -3.4302 9 6 2.5835 -0.4752 -4.0784 10 7 2.3404 0.2621 -5.1738 11 6 1.2792 0.0156 -6.1533 12 7 3.2722 1.3048 -5.2228 13 6 4.0608 1.2157 -4.1874 14 6 5.1990 2.1470 -3.8584 15 6 4.8902 3.6247 -4.1512 16 6 6.3333 3.7392 -4.6751 17 6 6.2659 2.2301 -4.9628 18 6 4.1057 -1.4306 0.0273 19 6 3.5716 -0.6942 1.2653 20 6 2.0415 -0.7230 1.2481 21 1 1.6589 -0.2247 2.1388 22 7 1.5797 -2.1132 1.2305 23 6 1.4502 -2.8066 2.4042 24 1 1.6889 -2.3286 3.3429 25 6 1.0131 -4.1240 2.3875 26 7 0.7227 -4.7065 1.2435 27 14 0.8357 -5.0696 3.9886 28 1 -0.5362 -4.8819 4.5250 29 1 1.0769 -6.5136 3.7400 30 1 1.8257 -4.5649 4.9738 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8895 33 1 -0.3634 0.5128 -0.8905 34 1 1.7632 -0.1575 -2.1390 35 1 1.6057 -1.7213 -1.2983 36 1 2.0351 -1.3502 -3.7621 37 1 0.3774 0.5497 -5.8539 38 1 1.6010 0.3670 -7.1336 39 1 1.0697 -1.0530 -6.2010 40 1 5.6120 1.9759 -2.8643 41 1 4.1331 3.7681 -4.9221 42 1 4.7015 4.2171 -3.2558 43 1 7.0565 4.0049 -3.9041 44 1 6.4258 4.3511 -5.5724 45 1 7.1862 1.6980 -4.7217 46 1 5.8856 1.9915 -5.9560 47 1 3.8351 -2.4851 0.0809 48 1 5.1902 -1.3314 -0.0188 49 1 3.9161 0.3398 1.2533 50 1 3.9347 -1.1888 2.1661 51 1 1.3657 -2.5425 0.3874 52 1 0.4170 -5.6270 1.2319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036080780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 08:11:01 Heat of formation + Delta-G solvation = 56.785010 kcal Electronic energy + Delta-G solvation = -31976.116807 eV Core-core repulsion = 27977.451072 eV Total energy + Delta-G solvation = -3998.665735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.61547 -40.88795 -39.38902 -38.91573 -35.80824 -34.24409 -34.19232 -33.31633 -31.65231 -30.57717 -28.77423 -27.52415 -26.80267 -26.49647 -25.88271 -25.18604 -23.35530 -22.81430 -21.71825 -20.77733 -19.91178 -19.63557 -19.24309 -18.20807 -17.54263 -16.79919 -16.56895 -16.55567 -16.33910 -16.00882 -15.82829 -15.77625 -15.51221 -14.96373 -14.65358 -14.46232 -14.29135 -14.03304 -13.85118 -13.69668 -13.51306 -13.34652 -13.27265 -13.07788 -12.95757 -12.84287 -12.82380 -12.65520 -12.40187 -12.12301 -12.06639 -11.93740 -11.79199 -11.61259 -11.55551 -11.37811 -11.29046 -11.14422 -10.86307 -10.80242 -10.23908 -9.70821 -9.42898 -8.89594 -7.87684 -5.12375 0.57058 1.12301 1.44615 1.49884 1.51112 1.58071 2.00291 2.26059 2.60911 3.32480 3.46376 3.59117 3.74801 3.80288 3.82654 3.88888 3.91714 3.96840 4.04855 4.12616 4.23529 4.26888 4.35232 4.45553 4.46360 4.49978 4.54885 4.59478 4.62158 4.72790 4.74133 4.80347 4.86968 4.87402 4.90952 5.00693 5.07355 5.09211 5.12168 5.16768 5.21156 5.28824 5.29334 5.34833 5.41136 5.53944 5.58849 5.62573 5.68471 5.90734 6.35343 6.48691 6.61219 7.22856 7.43385 8.18855 8.43993 9.35430 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.002925 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.796803 B = 9569.162190 C =10256.302938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 H 0.082 0.918 4 C 0.118 3.882 5 N -0.596 5.596 6 C 0.592 3.408 7 O -0.584 6.584 8 C -0.307 4.307 9 C 0.109 3.891 10 N -0.355 5.355 11 C 0.086 3.914 12 N -0.309 5.309 13 C 0.128 3.872 14 C -0.047 4.047 15 C -0.121 4.121 16 C -0.128 4.128 17 C -0.123 4.123 18 C 0.130 3.870 19 C -0.139 4.139 20 C 0.175 3.825 21 H 0.045 0.955 22 N -0.721 5.721 23 C -0.226 4.226 24 H 0.071 0.929 25 C -0.070 4.070 26 N -0.965 5.965 27 Si 0.960 3.040 28 H -0.291 1.291 29 H -0.301 1.301 30 H -0.275 1.275 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.207 0.793 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.066 0.934 50 H 0.059 0.941 51 H 0.376 0.624 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.604 15.675 -15.963 22.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 H 0.100 0.900 4 C -0.005 4.005 5 N -0.327 5.327 6 C 0.382 3.618 7 O -0.466 6.466 8 C -0.322 4.322 9 C -0.044 4.044 10 N -0.133 5.133 11 C -0.053 4.053 12 N -0.130 5.130 13 C -0.039 4.039 14 C -0.067 4.067 15 C -0.159 4.159 16 C -0.165 4.165 17 C -0.161 4.161 18 C 0.007 3.993 19 C -0.180 4.180 20 C 0.066 3.934 21 H 0.064 0.936 22 N -0.362 5.362 23 C -0.358 4.358 24 H 0.089 0.911 25 C -0.263 4.263 26 N -0.616 5.616 27 Si 0.791 3.209 28 H -0.218 1.218 29 H -0.228 1.228 30 H -0.200 1.200 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.223 0.777 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.210 0.790 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.790 16.260 -16.904 23.523 hybrid contribution -0.040 -1.993 1.696 2.617 sum 1.750 14.267 -15.208 20.926 Atomic orbital electron populations 1.21585 0.93412 1.01763 1.01911 1.21639 0.96915 0.99184 0.94351 0.89985 1.21956 0.78278 1.00881 0.99380 1.47966 1.07493 1.59618 1.17641 1.17649 0.85577 0.75962 0.82594 1.90692 1.15448 1.57737 1.82688 1.20143 1.05201 1.04985 1.01898 1.23411 0.95353 0.97645 0.87953 1.48657 1.25159 1.19932 1.19523 1.22414 0.86834 1.05033 0.90977 1.76993 1.04233 1.09834 1.21978 1.22269 0.95915 0.94705 0.90967 1.21166 0.91845 0.93412 1.00268 1.22942 0.98147 0.93180 1.01665 1.22812 0.96422 0.95263 1.02036 1.22866 0.97728 0.97915 0.97632 1.21379 0.97605 0.96429 0.83858 1.22457 0.99179 0.99512 0.96834 1.20397 0.91328 0.85400 0.96275 0.93648 1.42522 1.78941 1.09160 1.05626 1.19527 1.34669 0.93942 0.87701 0.91142 1.25316 1.03686 0.98270 0.99004 1.69772 1.53847 1.12840 1.25171 0.85332 0.77591 0.77618 0.80372 1.21808 1.22841 1.20031 0.93715 0.92709 0.91017 0.87919 0.91951 0.77670 0.88450 0.88254 0.86615 0.88916 0.89657 0.90745 0.89219 0.89718 0.91631 0.90226 0.92872 0.90904 0.91580 0.92265 0.78976 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.06 71.98 0.65 -2.89 16 2 C -0.10 -2.96 2.67 -10.72 -0.03 -2.99 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.12 3.35 4.45 86.36 0.38 3.74 16 5 N -0.60 -19.60 2.97 -821.92 -2.44 -22.04 16 6 C 0.59 20.32 7.33 86.66 0.64 20.96 16 7 O -0.58 -23.77 15.52 -4.05 -0.06 -23.83 16 8 C -0.31 -8.80 5.21 -20.15 -0.10 -8.91 16 9 C 0.11 2.37 9.12 84.28 0.77 3.14 16 10 N -0.36 -6.91 3.98 -367.77 -1.46 -8.38 16 11 C 0.09 0.79 11.44 127.77 1.46 2.25 16 12 N -0.31 -7.63 12.13 -46.68 -0.57 -8.20 16 13 C 0.13 3.51 6.31 43.51 0.27 3.78 16 14 C -0.05 -1.17 3.96 -11.02 -0.04 -1.21 16 15 C -0.12 -2.38 7.63 31.18 0.24 -2.14 16 16 C -0.13 -2.15 8.09 31.18 0.25 -1.90 16 17 C -0.12 -2.67 7.63 31.12 0.24 -2.43 16 18 C 0.13 4.79 6.21 86.51 0.54 5.33 16 19 C -0.14 -4.90 5.80 30.82 0.18 -4.72 16 20 C 0.17 6.38 2.53 45.02 0.11 6.49 16 21 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 22 N -0.72 -32.75 3.64 -322.81 -1.17 -33.92 16 23 C -0.23 -11.76 9.93 84.03 0.83 -10.93 16 24 H 0.07 3.59 7.83 -2.91 -0.02 3.57 16 25 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 26 N -0.96 -56.01 13.06 21.65 0.28 -55.73 16 27 Si 0.96 45.09 29.55 68.60 2.03 47.12 16 28 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 29 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 30 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 31 H 0.04 1.49 7.54 -2.39 -0.02 1.47 16 32 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 2.42 4.84 -2.39 -0.01 2.41 16 35 H 0.06 1.98 6.64 -2.39 -0.02 1.96 16 36 H 0.21 3.47 7.35 -2.91 -0.02 3.45 16 37 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 2.71 7.15 -2.39 -0.02 2.69 16 41 H 0.08 1.70 7.80 -2.39 -0.02 1.69 16 42 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 1.75 8.09 -2.39 -0.02 1.73 16 47 H 0.05 2.25 7.74 -2.38 -0.02 2.23 16 48 H 0.07 2.76 7.00 -2.39 -0.02 2.74 16 49 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.38 18.16 5.93 -92.70 -0.55 17.61 16 52 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -69.62 407.01 3.83 -65.79 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.37 Total: 35.00 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 6.86 Total: 4.18 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -5.36 Total: -128.26 kcal Atomic # 8 Polarization: -23.77 SS G_CDS: -0.06 Total: -23.83 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.62 3.83 -65.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036080780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.575 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds